Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00461

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00460 and MPMX19_00461 are separated by 226 nucleotidesMPMX19_00461 and MPMX19_00462 are separated by 25 nucleotides MPMX19_00460: MPMX19_00460 - Sensor histidine kinase RcsC, at 458,086 to 461,184 _00460 MPMX19_00461: MPMX19_00461 - Caffeyl-CoA reductase-Etf complex subunit CarD, at 461,411 to 462,262 _00461 MPMX19_00462: MPMX19_00462 - Caffeyl-CoA reductase-Etf complex subunit CarE, at 462,288 to 463,367 _00462 Position (kb) 461 462 463Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 460.809 kb on - strand, within MPMX19_00460at 461.341 kb on + strandat 461.341 kb on + strandat 461.342 kb on - strandat 461.342 kb on - strandat 461.342 kb on - strandat 461.342 kb on - strandat 461.342 kb on - strandat 461.342 kb on - strandat 461.342 kb on - strandat 461.342 kb on - strandat 461.428 kb on + strandat 461.428 kb on + strandat 461.428 kb on + strandat 461.429 kb on - strandat 461.429 kb on - strandat 461.429 kb on - strandat 461.429 kb on - strandat 461.429 kb on - strandat 461.705 kb on + strand, within MPMX19_00461at 461.705 kb on + strand, within MPMX19_00461at 461.705 kb on + strand, within MPMX19_00461at 461.705 kb on + strand, within MPMX19_00461at 461.705 kb on + strand, within MPMX19_00461at 461.705 kb on + strand, within MPMX19_00461at 461.706 kb on - strand, within MPMX19_00461at 461.706 kb on - strand, within MPMX19_00461at 461.706 kb on - strand, within MPMX19_00461at 461.706 kb on - strand, within MPMX19_00461at 461.706 kb on - strand, within MPMX19_00461at 461.706 kb on - strand, within MPMX19_00461at 461.706 kb on - strand, within MPMX19_00461at 461.706 kb on - strand, within MPMX19_00461at 461.706 kb on - strand, within MPMX19_00461at 461.706 kb on - strand, within MPMX19_00461at 461.846 kb on + strand, within MPMX19_00461at 461.846 kb on + strand, within MPMX19_00461at 461.846 kb on + strand, within MPMX19_00461at 461.846 kb on + strand, within MPMX19_00461at 461.846 kb on + strand, within MPMX19_00461at 461.846 kb on + strand, within MPMX19_00461at 461.846 kb on + strand, within MPMX19_00461at 461.846 kb on + strand, within MPMX19_00461at 461.846 kb on + strand, within MPMX19_00461at 461.846 kb on + strand, within MPMX19_00461at 461.846 kb on + strand, within MPMX19_00461at 461.846 kb on + strand, within MPMX19_00461at 461.846 kb on + strand, within MPMX19_00461at 461.846 kb on + strand, within MPMX19_00461at 461.846 kb on + strand, within MPMX19_00461at 461.846 kb on + strand, within MPMX19_00461at 461.846 kb on + strand, within MPMX19_00461at 461.846 kb on + strand, within MPMX19_00461at 461.846 kb on + strand, within MPMX19_00461at 461.846 kb on + strand, within MPMX19_00461at 461.846 kb on + strand, within MPMX19_00461at 461.846 kb on + strand, within MPMX19_00461at 461.846 kb on + strand, within MPMX19_00461at 461.846 kb on + strand, within MPMX19_00461at 461.846 kb on + strand, within MPMX19_00461at 461.846 kb on + strand, within MPMX19_00461at 461.846 kb on + strand, within MPMX19_00461at 461.846 kb on + strand, within MPMX19_00461at 461.847 kb on - strand, within MPMX19_00461at 461.847 kb on - strand, within MPMX19_00461at 461.847 kb on - strand, within MPMX19_00461at 461.847 kb on - strand, within MPMX19_00461at 461.847 kb on - strand, within MPMX19_00461at 461.847 kb on - strand, within MPMX19_00461at 461.847 kb on - strand, within MPMX19_00461at 461.847 kb on - strand, within MPMX19_00461at 461.847 kb on - strand, within MPMX19_00461at 461.847 kb on - strand, within MPMX19_00461at 461.847 kb on - strand, within MPMX19_00461at 461.847 kb on - strand, within MPMX19_00461at 461.847 kb on - strand, within MPMX19_00461at 461.847 kb on - strand, within MPMX19_00461at 461.847 kb on - strand, within MPMX19_00461at 461.847 kb on - strand, within MPMX19_00461at 461.847 kb on - strand, within MPMX19_00461at 461.847 kb on - strand, within MPMX19_00461at 461.847 kb on - strand, within MPMX19_00461at 461.847 kb on - strand, within MPMX19_00461at 461.847 kb on - strand, within MPMX19_00461at 461.847 kb on - strand, within MPMX19_00461at 461.847 kb on - strand, within MPMX19_00461at 462.348 kb on + strandat 462.348 kb on + strandat 462.523 kb on - strand, within MPMX19_00462at 462.540 kb on + strand, within MPMX19_00462at 462.540 kb on + strand, within MPMX19_00462at 462.540 kb on + strand, within MPMX19_00462at 462.540 kb on + strand, within MPMX19_00462at 462.540 kb on + strand, within MPMX19_00462at 462.540 kb on + strand, within MPMX19_00462at 462.540 kb on + strand, within MPMX19_00462at 462.540 kb on + strand, within MPMX19_00462at 462.540 kb on + strand, within MPMX19_00462at 462.541 kb on - strand, within MPMX19_00462at 462.541 kb on - strand, within MPMX19_00462at 462.541 kb on - strand, within MPMX19_00462at 462.541 kb on - strand, within MPMX19_00462at 462.541 kb on - strand, within MPMX19_00462at 462.541 kb on - strand, within MPMX19_00462at 462.541 kb on - strand, within MPMX19_00462at 462.541 kb on - strand, within MPMX19_00462at 462.541 kb on - strand, within MPMX19_00462at 462.541 kb on - strand, within MPMX19_00462at 462.541 kb on - strand, within MPMX19_00462at 462.541 kb on - strand, within MPMX19_00462at 462.541 kb on - strand, within MPMX19_00462at 462.570 kb on + strand, within MPMX19_00462at 462.585 kb on + strand, within MPMX19_00462at 462.585 kb on + strand, within MPMX19_00462at 462.586 kb on - strand, within MPMX19_00462at 462.586 kb on - strand, within MPMX19_00462at 462.586 kb on - strand, within MPMX19_00462at 462.586 kb on - strand, within MPMX19_00462at 462.586 kb on - strand, within MPMX19_00462at 462.586 kb on - strand, within MPMX19_00462at 462.586 kb on - strand, within MPMX19_00462at 462.732 kb on + strand, within MPMX19_00462at 462.732 kb on + strand, within MPMX19_00462at 462.732 kb on + strand, within MPMX19_00462at 462.732 kb on + strand, within MPMX19_00462at 462.732 kb on + strand, within MPMX19_00462at 462.732 kb on + strand, within MPMX19_00462at 462.732 kb on + strand, within MPMX19_00462at 462.732 kb on + strand, within MPMX19_00462at 462.732 kb on + strand, within MPMX19_00462at 462.732 kb on + strand, within MPMX19_00462at 462.732 kb on + strand, within MPMX19_00462at 462.732 kb on + strand, within MPMX19_00462at 462.732 kb on + strand, within MPMX19_00462at 462.732 kb on + strand, within MPMX19_00462at 462.732 kb on + strand, within MPMX19_00462at 462.732 kb on + strand, within MPMX19_00462at 462.732 kb on + strand, within MPMX19_00462at 462.732 kb on + strand, within MPMX19_00462at 462.732 kb on + strand, within MPMX19_00462at 462.732 kb on + strand, within MPMX19_00462at 462.732 kb on + strand, within MPMX19_00462at 462.732 kb on + strand, within MPMX19_00462at 462.732 kb on + strand, within MPMX19_00462at 462.732 kb on + strand, within MPMX19_00462at 462.733 kb on - strand, within MPMX19_00462at 462.733 kb on - strand, within MPMX19_00462at 462.733 kb on - strand, within MPMX19_00462at 462.733 kb on - strand, within MPMX19_00462at 462.733 kb on - strand, within MPMX19_00462at 462.733 kb on - strand, within MPMX19_00462at 462.733 kb on - strand, within MPMX19_00462at 462.733 kb on - strand, within MPMX19_00462at 462.733 kb on - strand, within MPMX19_00462at 462.733 kb on - strand, within MPMX19_00462at 462.733 kb on - strand, within MPMX19_00462at 462.733 kb on - strand, within MPMX19_00462at 462.733 kb on - strand, within MPMX19_00462at 462.733 kb on - strand, within MPMX19_00462at 462.733 kb on - strand, within MPMX19_00462at 462.733 kb on - strand, within MPMX19_00462at 462.733 kb on - strand, within MPMX19_00462at 462.733 kb on - strand, within MPMX19_00462at 462.733 kb on - strand, within MPMX19_00462at 463.164 kb on + strand, within MPMX19_00462at 463.164 kb on + strand, within MPMX19_00462at 463.164 kb on + strand, within MPMX19_00462at 463.164 kb on + strand, within MPMX19_00462at 463.164 kb on + strand, within MPMX19_00462at 463.164 kb on + strand, within MPMX19_00462at 463.164 kb on + strand, within MPMX19_00462at 463.164 kb on + strand, within MPMX19_00462at 463.164 kb on + strand, within MPMX19_00462at 463.164 kb on + strand, within MPMX19_00462at 463.164 kb on + strand, within MPMX19_00462at 463.165 kb on + strand, within MPMX19_00462at 463.165 kb on - strand, within MPMX19_00462at 463.165 kb on - strand, within MPMX19_00462at 463.165 kb on - strand, within MPMX19_00462at 463.165 kb on - strand, within MPMX19_00462at 463.165 kb on - strand, within MPMX19_00462at 463.165 kb on - strand, within MPMX19_00462at 463.165 kb on - strand, within MPMX19_00462at 463.165 kb on - strand, within MPMX19_00462at 463.165 kb on - strand, within MPMX19_00462at 463.165 kb on - strand, within MPMX19_00462at 463.165 kb on - strand, within MPMX19_00462at 463.165 kb on - strand, within MPMX19_00462at 463.165 kb on - strand, within MPMX19_00462at 463.165 kb on - strand, within MPMX19_00462at 463.165 kb on - strand, within MPMX19_00462

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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460,809 - MPMX19_00460 0.88 -1.0
461,341 + +1.2
461,341 + -0.2
461,342 - -0.2
461,342 - +0.2
461,342 - -0.5
461,342 - +0.5
461,342 - +0.5
461,342 - -0.7
461,342 - -0.5
461,342 - +1.1
461,428 + -1.6
461,428 + -0.2
461,428 + -1.0
461,429 - +0.6
461,429 - -1.2
461,429 - +0.1
461,429 - -1.7
461,429 - -1.1
461,705 + MPMX19_00461 0.35 -0.6
461,705 + MPMX19_00461 0.35 +0.6
461,705 + MPMX19_00461 0.35 -0.1
461,705 + MPMX19_00461 0.35 -1.2
461,705 + MPMX19_00461 0.35 +0.4
461,705 + MPMX19_00461 0.35 +1.6
461,706 - MPMX19_00461 0.35 -1.5
461,706 - MPMX19_00461 0.35 -0.2
461,706 - MPMX19_00461 0.35 +0.0
461,706 - MPMX19_00461 0.35 +0.1
461,706 - MPMX19_00461 0.35 +0.2
461,706 - MPMX19_00461 0.35 -2.8
461,706 - MPMX19_00461 0.35 -3.1
461,706 - MPMX19_00461 0.35 -0.6
461,706 - MPMX19_00461 0.35 -0.1
461,706 - MPMX19_00461 0.35 +0.3
461,846 + MPMX19_00461 0.51 -0.2
461,846 + MPMX19_00461 0.51 -1.2
461,846 + MPMX19_00461 0.51 -0.2
461,846 + MPMX19_00461 0.51 -1.4
461,846 + MPMX19_00461 0.51 -0.4
461,846 + MPMX19_00461 0.51 +0.4
461,846 + MPMX19_00461 0.51 +0.0
461,846 + MPMX19_00461 0.51 -2.3
461,846 + MPMX19_00461 0.51 -0.7
461,846 + MPMX19_00461 0.51 -0.2
461,846 + MPMX19_00461 0.51 -0.7
461,846 + MPMX19_00461 0.51 -0.7
461,846 + MPMX19_00461 0.51 -0.5
461,846 + MPMX19_00461 0.51 +1.4
461,846 + MPMX19_00461 0.51 -0.1
461,846 + MPMX19_00461 0.51 +0.7
461,846 + MPMX19_00461 0.51 -0.9
461,846 + MPMX19_00461 0.51 -0.4
461,846 + MPMX19_00461 0.51 +0.5
461,846 + MPMX19_00461 0.51 -0.2
461,846 + MPMX19_00461 0.51 +1.9
461,846 + MPMX19_00461 0.51 +0.5
461,846 + MPMX19_00461 0.51 -2.0
461,846 + MPMX19_00461 0.51 -0.5
461,846 + MPMX19_00461 0.51 -2.6
461,846 + MPMX19_00461 0.51 -1.4
461,846 + MPMX19_00461 0.51 +0.1
461,846 + MPMX19_00461 0.51 -0.7
461,847 - MPMX19_00461 0.51 -0.4
461,847 - MPMX19_00461 0.51 -0.5
461,847 - MPMX19_00461 0.51 +0.4
461,847 - MPMX19_00461 0.51 -0.9
461,847 - MPMX19_00461 0.51 -0.2
461,847 - MPMX19_00461 0.51 -1.4
461,847 - MPMX19_00461 0.51 -2.1
461,847 - MPMX19_00461 0.51 +0.5
461,847 - MPMX19_00461 0.51 +0.2
461,847 - MPMX19_00461 0.51 -0.5
461,847 - MPMX19_00461 0.51 -2.7
461,847 - MPMX19_00461 0.51 +0.8
461,847 - MPMX19_00461 0.51 +2.5
461,847 - MPMX19_00461 0.51 -0.3
461,847 - MPMX19_00461 0.51 -0.3
461,847 - MPMX19_00461 0.51 +1.3
461,847 - MPMX19_00461 0.51 +0.1
461,847 - MPMX19_00461 0.51 -2.1
461,847 - MPMX19_00461 0.51 +0.1
461,847 - MPMX19_00461 0.51 +0.4
461,847 - MPMX19_00461 0.51 -0.8
461,847 - MPMX19_00461 0.51 -0.3
461,847 - MPMX19_00461 0.51 -0.1
462,348 + +0.5
462,348 + +2.7
462,523 - MPMX19_00462 0.22 -0.2
462,540 + MPMX19_00462 0.23 +0.9
462,540 + MPMX19_00462 0.23 -1.5
462,540 + MPMX19_00462 0.23 -0.5
462,540 + MPMX19_00462 0.23 +0.0
462,540 + MPMX19_00462 0.23 -0.7
462,540 + MPMX19_00462 0.23 +0.8
462,540 + MPMX19_00462 0.23 -1.2
462,540 + MPMX19_00462 0.23 -0.5
462,540 + MPMX19_00462 0.23 +0.1
462,541 - MPMX19_00462 0.23 -1.1
462,541 - MPMX19_00462 0.23 -0.3
462,541 - MPMX19_00462 0.23 -0.2
462,541 - MPMX19_00462 0.23 -0.9
462,541 - MPMX19_00462 0.23 +0.5
462,541 - MPMX19_00462 0.23 -0.3
462,541 - MPMX19_00462 0.23 +1.0
462,541 - MPMX19_00462 0.23 -1.2
462,541 - MPMX19_00462 0.23 +0.4
462,541 - MPMX19_00462 0.23 -0.1
462,541 - MPMX19_00462 0.23 -2.2
462,541 - MPMX19_00462 0.23 +0.4
462,541 - MPMX19_00462 0.23 -0.1
462,570 + MPMX19_00462 0.26 +0.1
462,585 + MPMX19_00462 0.28 +0.8
462,585 + MPMX19_00462 0.28 -0.7
462,586 - MPMX19_00462 0.28 -0.1
462,586 - MPMX19_00462 0.28 +0.5
462,586 - MPMX19_00462 0.28 -0.1
462,586 - MPMX19_00462 0.28 -1.8
462,586 - MPMX19_00462 0.28 -2.2
462,586 - MPMX19_00462 0.28 -0.4
462,586 - MPMX19_00462 0.28 -0.8
462,732 + MPMX19_00462 0.41 +0.1
462,732 + MPMX19_00462 0.41 -1.5
462,732 + MPMX19_00462 0.41 +0.2
462,732 + MPMX19_00462 0.41 -0.5
462,732 + MPMX19_00462 0.41 -1.2
462,732 + MPMX19_00462 0.41 -1.1
462,732 + MPMX19_00462 0.41 -2.9
462,732 + MPMX19_00462 0.41 +0.3
462,732 + MPMX19_00462 0.41 -1.4
462,732 + MPMX19_00462 0.41 -1.1
462,732 + MPMX19_00462 0.41 -0.5
462,732 + MPMX19_00462 0.41 +0.3
462,732 + MPMX19_00462 0.41 -1.5
462,732 + MPMX19_00462 0.41 +0.5
462,732 + MPMX19_00462 0.41 +1.1
462,732 + MPMX19_00462 0.41 -0.5
462,732 + MPMX19_00462 0.41 -0.2
462,732 + MPMX19_00462 0.41 -0.7
462,732 + MPMX19_00462 0.41 -1.8
462,732 + MPMX19_00462 0.41 -0.8
462,732 + MPMX19_00462 0.41 +0.3
462,732 + MPMX19_00462 0.41 -1.2
462,732 + MPMX19_00462 0.41 -2.8
462,732 + MPMX19_00462 0.41 -0.2
462,733 - MPMX19_00462 0.41 -2.1
462,733 - MPMX19_00462 0.41 -0.8
462,733 - MPMX19_00462 0.41 +1.1
462,733 - MPMX19_00462 0.41 -1.4
462,733 - MPMX19_00462 0.41 +0.4
462,733 - MPMX19_00462 0.41 -0.7
462,733 - MPMX19_00462 0.41 -0.7
462,733 - MPMX19_00462 0.41 +0.4
462,733 - MPMX19_00462 0.41 -1.5
462,733 - MPMX19_00462 0.41 +0.4
462,733 - MPMX19_00462 0.41 +0.0
462,733 - MPMX19_00462 0.41 -0.8
462,733 - MPMX19_00462 0.41 +0.1
462,733 - MPMX19_00462 0.41 +0.3
462,733 - MPMX19_00462 0.41 -1.6
462,733 - MPMX19_00462 0.41 +0.2
462,733 - MPMX19_00462 0.41 -2.0
462,733 - MPMX19_00462 0.41 -1.6
462,733 - MPMX19_00462 0.41 -2.4
463,164 + MPMX19_00462 0.81 -0.6
463,164 + MPMX19_00462 0.81 -0.0
463,164 + MPMX19_00462 0.81 -1.4
463,164 + MPMX19_00462 0.81 -0.4
463,164 + MPMX19_00462 0.81 +0.2
463,164 + MPMX19_00462 0.81 -2.8
463,164 + MPMX19_00462 0.81 +0.7
463,164 + MPMX19_00462 0.81 -0.9
463,164 + MPMX19_00462 0.81 +1.5
463,164 + MPMX19_00462 0.81 -0.3
463,164 + MPMX19_00462 0.81 +0.2
463,165 + MPMX19_00462 0.81 +0.8
463,165 - MPMX19_00462 0.81 -0.3
463,165 - MPMX19_00462 0.81 -1.1
463,165 - MPMX19_00462 0.81 +0.3
463,165 - MPMX19_00462 0.81 +0.9
463,165 - MPMX19_00462 0.81 -1.1
463,165 - MPMX19_00462 0.81 +1.1
463,165 - MPMX19_00462 0.81 -0.3
463,165 - MPMX19_00462 0.81 +1.4
463,165 - MPMX19_00462 0.81 +0.4
463,165 - MPMX19_00462 0.81 -1.1
463,165 - MPMX19_00462 0.81 -1.9
463,165 - MPMX19_00462 0.81 -0.6
463,165 - MPMX19_00462 0.81 -0.8
463,165 - MPMX19_00462 0.81 -1.2
463,165 - MPMX19_00462 0.81 +0.1

Or see this region's nucleotide sequence