Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00447 and MPMX19_00448 are separated by 345 nucleotides MPMX19_00448 and MPMX19_00449 are separated by 54 nucleotides MPMX19_00449 and MPMX19_00450 are separated by 48 nucleotides MPMX19_00450 and MPMX19_00451 are separated by 6 nucleotides
MPMX19_00447: MPMX19_00447 - hypothetical protein, at 446,368 to 447,141
_00447
MPMX19_00448: MPMX19_00448 - Phosphoribosylaminoimidazole-succinocarboxamide synthase, at 447,487 to 448,251
_00448
MPMX19_00449: MPMX19_00449 - Phosphoribosylformylglycinamidine synthase subunit PurS, at 448,306 to 448,548
_00449
MPMX19_00450: MPMX19_00450 - hypothetical protein, at 448,597 to 449,229
_00450
MPMX19_00451: MPMX19_00451 - Putative lipid kinase BmrU, at 449,236 to 450,207
_00451
Position (kb) 447
448
449 Strain fitness (log2 ratio) -2
-1
0
1
2 at 446.699 kb on - strand, within MPMX19_00447 at 446.863 kb on + strand, within MPMX19_00447 at 446.863 kb on + strand, within MPMX19_00447 at 446.864 kb on - strand, within MPMX19_00447 at 446.864 kb on - strand, within MPMX19_00447 at 446.864 kb on - strand, within MPMX19_00447 at 446.864 kb on - strand, within MPMX19_00447 at 446.864 kb on - strand, within MPMX19_00447 at 446.864 kb on - strand, within MPMX19_00447 at 446.864 kb on - strand, within MPMX19_00447 at 446.864 kb on - strand, within MPMX19_00447 at 446.864 kb on - strand, within MPMX19_00447 at 446.864 kb on - strand, within MPMX19_00447 at 447.121 kb on + strand at 447.121 kb on + strand at 447.121 kb on + strand at 447.121 kb on + strand at 447.121 kb on + strand at 447.121 kb on + strand at 447.121 kb on + strand at 447.121 kb on + strand at 447.122 kb on - strand at 447.122 kb on - strand at 447.122 kb on - strand at 447.122 kb on - strand at 447.122 kb on - strand at 447.122 kb on - strand at 447.206 kb on + strand at 447.207 kb on - strand at 447.207 kb on - strand at 447.207 kb on - strand at 447.217 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.416 kb on - strand at 447.416 kb on - strand at 447.416 kb on - strand at 447.416 kb on - strand at 447.416 kb on - strand at 447.416 kb on - strand at 447.416 kb on - strand at 447.417 kb on + strand at 447.417 kb on + strand at 447.417 kb on + strand at 447.465 kb on + strand at 447.465 kb on + strand at 447.465 kb on + strand at 447.465 kb on + strand at 447.465 kb on + strand at 447.465 kb on + strand at 447.465 kb on + strand at 447.465 kb on + strand at 447.465 kb on + strand at 447.465 kb on + strand at 447.465 kb on + strand at 447.465 kb on + strand at 447.466 kb on - strand at 447.466 kb on - strand at 447.469 kb on + strand at 447.469 kb on + strand at 447.469 kb on + strand at 447.469 kb on + strand at 447.469 kb on + strand at 447.469 kb on + strand at 447.469 kb on + strand at 447.469 kb on + strand at 447.469 kb on + strand at 447.469 kb on + strand at 447.469 kb on + strand at 447.469 kb on + strand at 447.470 kb on - strand at 447.470 kb on - strand at 447.470 kb on - strand at 447.508 kb on + strand at 447.508 kb on + strand at 447.508 kb on + strand at 447.508 kb on + strand at 447.508 kb on + strand at 447.508 kb on + strand at 447.508 kb on + strand at 447.508 kb on + strand at 447.509 kb on - strand at 447.527 kb on + strand at 447.527 kb on + strand at 447.527 kb on + strand at 447.527 kb on + strand at 447.527 kb on + strand at 447.527 kb on + strand at 447.527 kb on + strand at 447.527 kb on + strand at 447.527 kb on + strand at 447.527 kb on + strand at 447.527 kb on + strand at 447.527 kb on + strand at 447.527 kb on + strand at 447.528 kb on - strand at 447.565 kb on + strand, within MPMX19_00448 at 447.565 kb on + strand, within MPMX19_00448 at 447.565 kb on + strand, within MPMX19_00448 at 447.565 kb on + strand, within MPMX19_00448 at 447.566 kb on - strand, within MPMX19_00448 at 447.566 kb on - strand, within MPMX19_00448 at 447.652 kb on + strand, within MPMX19_00448 at 447.652 kb on + strand, within MPMX19_00448 at 447.652 kb on + strand, within MPMX19_00448 at 447.844 kb on + strand, within MPMX19_00448 at 447.844 kb on + strand, within MPMX19_00448 at 447.844 kb on + strand, within MPMX19_00448 at 447.844 kb on + strand, within MPMX19_00448 at 447.847 kb on + strand, within MPMX19_00448 at 447.847 kb on + strand, within MPMX19_00448 at 447.847 kb on + strand, within MPMX19_00448 at 447.847 kb on + strand, within MPMX19_00448 at 447.847 kb on + strand, within MPMX19_00448 at 447.847 kb on + strand, within MPMX19_00448 at 447.848 kb on - strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.851 kb on - strand, within MPMX19_00448 at 447.851 kb on - strand, within MPMX19_00448 at 447.851 kb on - strand, within MPMX19_00448 at 447.967 kb on + strand, within MPMX19_00448 at 447.967 kb on + strand, within MPMX19_00448 at 447.967 kb on + strand, within MPMX19_00448 at 447.967 kb on + strand, within MPMX19_00448 at 447.967 kb on + strand, within MPMX19_00448 at 447.967 kb on + strand, within MPMX19_00448 at 447.967 kb on + strand, within MPMX19_00448 at 447.967 kb on + strand, within MPMX19_00448 at 447.967 kb on + strand, within MPMX19_00448 at 447.967 kb on + strand, within MPMX19_00448 at 447.967 kb on + strand, within MPMX19_00448 at 447.967 kb on + strand, within MPMX19_00448 at 447.968 kb on - strand, within MPMX19_00448 at 447.968 kb on - strand, within MPMX19_00448 at 447.968 kb on - strand, within MPMX19_00448 at 448.171 kb on + strand, within MPMX19_00448 at 448.171 kb on + strand, within MPMX19_00448 at 448.171 kb on + strand, within MPMX19_00448 at 448.171 kb on + strand, within MPMX19_00448 at 448.172 kb on - strand, within MPMX19_00448 at 448.287 kb on + strand at 448.525 kb on + strand at 448.525 kb on + strand at 448.526 kb on - strand at 448.526 kb on - strand at 448.526 kb on - strand at 448.865 kb on - strand, within MPMX19_00450 at 448.865 kb on - strand, within MPMX19_00450 at 448.996 kb on + strand, within MPMX19_00450 at 448.996 kb on + strand, within MPMX19_00450 at 448.996 kb on + strand, within MPMX19_00450 at 448.996 kb on + strand, within MPMX19_00450 at 448.996 kb on + strand, within MPMX19_00450 at 448.996 kb on + strand, within MPMX19_00450 at 448.996 kb on + strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.174 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 446,699 - MPMX19_00447 0.43 -1.5 446,863 + MPMX19_00447 0.64 -1.0 446,863 + MPMX19_00447 0.64 +1.1 446,864 - MPMX19_00447 0.64 +1.0 446,864 - MPMX19_00447 0.64 -0.6 446,864 - MPMX19_00447 0.64 -0.4 446,864 - MPMX19_00447 0.64 -0.5 446,864 - MPMX19_00447 0.64 -0.4 446,864 - MPMX19_00447 0.64 -0.3 446,864 - MPMX19_00447 0.64 -0.5 446,864 - MPMX19_00447 0.64 -0.9 446,864 - MPMX19_00447 0.64 -0.7 446,864 - MPMX19_00447 0.64 -1.1 447,121 + -0.4 447,121 + +0.1 447,121 + +0.7 447,121 + -1.0 447,121 + -1.9 447,121 + -1.2 447,121 + -1.3 447,121 + -0.7 447,122 - +0.9 447,122 - +0.4 447,122 - -0.6 447,122 - +0.2 447,122 - -0.1 447,122 - -0.6 447,206 + -0.6 447,207 - -1.2 447,207 - +0.7 447,207 - -1.4 447,217 + -1.5 447,415 + -0.2 447,415 + -0.1 447,415 + +0.3 447,415 + -0.9 447,415 + -0.8 447,415 + -1.6 447,415 + +1.1 447,415 + -1.4 447,415 + +1.3 447,415 + -1.9 447,415 + -1.5 447,415 + +0.4 447,415 + -0.5 447,415 + +0.5 447,415 + +0.3 447,415 + +0.3 447,415 + +1.7 447,415 + -0.4 447,415 + +0.8 447,415 + -0.0 447,415 + +0.5 447,415 + +0.1 447,415 + -0.7 447,415 + -1.2 447,415 + -0.2 447,415 + -0.2 447,415 + -1.6 447,415 + -2.2 447,415 + -0.5 447,415 + -1.5 447,415 + -1.4 447,416 - -1.8 447,416 - +0.2 447,416 - -0.1 447,416 - -1.1 447,416 - -0.7 447,416 - -0.5 447,416 - +0.1 447,417 + -0.5 447,417 + -1.1 447,417 + -2.1 447,465 + -2.1 447,465 + +1.1 447,465 + +0.1 447,465 + +0.9 447,465 + -1.4 447,465 + +0.1 447,465 + -0.7 447,465 + -0.4 447,465 + -0.9 447,465 + -1.6 447,465 + -2.2 447,465 + +0.5 447,466 - -1.1 447,466 - -1.1 447,469 + -0.6 447,469 + -0.0 447,469 + -2.0 447,469 + -1.6 447,469 + +0.1 447,469 + -0.7 447,469 + -0.8 447,469 + -1.4 447,469 + -1.9 447,469 + -1.2 447,469 + -1.7 447,469 + -1.8 447,470 - -1.1 447,470 - -1.2 447,470 - +0.5 447,508 + -0.9 447,508 + +1.8 447,508 + -1.6 447,508 + -1.2 447,508 + -0.1 447,508 + -1.1 447,508 + +0.6 447,508 + -1.0 447,509 - -1.1 447,527 + -0.4 447,527 + -1.7 447,527 + +0.7 447,527 + -0.4 447,527 + +0.3 447,527 + -0.3 447,527 + -1.2 447,527 + -0.7 447,527 + +0.9 447,527 + +1.3 447,527 + -0.9 447,527 + -1.0 447,527 + -0.2 447,528 - -0.1 447,565 + MPMX19_00448 0.10 -0.5 447,565 + MPMX19_00448 0.10 -0.5 447,565 + MPMX19_00448 0.10 -1.5 447,565 + MPMX19_00448 0.10 -1.4 447,566 - MPMX19_00448 0.10 -1.1 447,566 - MPMX19_00448 0.10 -1.5 447,652 + MPMX19_00448 0.22 +0.1 447,652 + MPMX19_00448 0.22 -1.5 447,652 + MPMX19_00448 0.22 -0.2 447,844 + MPMX19_00448 0.47 -0.7 447,844 + MPMX19_00448 0.47 -0.3 447,844 + MPMX19_00448 0.47 -0.7 447,844 + MPMX19_00448 0.47 -2.0 447,847 + MPMX19_00448 0.47 -0.0 447,847 + MPMX19_00448 0.47 -0.4 447,847 + MPMX19_00448 0.47 -1.2 447,847 + MPMX19_00448 0.47 +1.4 447,847 + MPMX19_00448 0.47 -0.2 447,847 + MPMX19_00448 0.47 -0.7 447,848 - MPMX19_00448 0.47 -0.0 447,850 + MPMX19_00448 0.47 -1.2 447,850 + MPMX19_00448 0.47 -0.7 447,850 + MPMX19_00448 0.47 -1.7 447,850 + MPMX19_00448 0.47 -0.9 447,850 + MPMX19_00448 0.47 -0.4 447,850 + MPMX19_00448 0.47 -0.1 447,850 + MPMX19_00448 0.47 -1.6 447,850 + MPMX19_00448 0.47 +0.3 447,850 + MPMX19_00448 0.47 -1.8 447,850 + MPMX19_00448 0.47 -1.5 447,850 + MPMX19_00448 0.47 -1.2 447,850 + MPMX19_00448 0.47 -1.2 447,850 + MPMX19_00448 0.47 -0.8 447,850 + MPMX19_00448 0.47 -0.4 447,850 + MPMX19_00448 0.47 -1.2 447,851 - MPMX19_00448 0.48 +0.3 447,851 - MPMX19_00448 0.48 -0.2 447,851 - MPMX19_00448 0.48 -1.5 447,967 + MPMX19_00448 0.63 -0.8 447,967 + MPMX19_00448 0.63 -1.8 447,967 + MPMX19_00448 0.63 -0.7 447,967 + MPMX19_00448 0.63 -2.6 447,967 + MPMX19_00448 0.63 -2.1 447,967 + MPMX19_00448 0.63 -1.2 447,967 + MPMX19_00448 0.63 -0.6 447,967 + MPMX19_00448 0.63 -1.4 447,967 + MPMX19_00448 0.63 -1.7 447,967 + MPMX19_00448 0.63 -0.7 447,967 + MPMX19_00448 0.63 +1.1 447,967 + MPMX19_00448 0.63 -0.7 447,968 - MPMX19_00448 0.63 +1.1 447,968 - MPMX19_00448 0.63 -0.6 447,968 - MPMX19_00448 0.63 -1.2 448,171 + MPMX19_00448 0.89 -1.8 448,171 + MPMX19_00448 0.89 -0.1 448,171 + MPMX19_00448 0.89 -0.0 448,171 + MPMX19_00448 0.89 -2.2 448,172 - MPMX19_00448 0.90 -0.1 448,287 + -0.9 448,525 + -0.1 448,525 + -1.4 448,526 - -1.5 448,526 - -0.1 448,526 - -0.7 448,865 - MPMX19_00450 0.42 -0.8 448,865 - MPMX19_00450 0.42 -1.0 448,996 + MPMX19_00450 0.63 -0.5 448,996 + MPMX19_00450 0.63 -1.2 448,996 + MPMX19_00450 0.63 -0.1 448,996 + MPMX19_00450 0.63 -0.2 448,996 + MPMX19_00450 0.63 -0.4 448,996 + MPMX19_00450 0.63 +0.4 448,996 + MPMX19_00450 0.63 +0.9 448,997 - MPMX19_00450 0.63 -0.3 448,997 - MPMX19_00450 0.63 -2.2 448,997 - MPMX19_00450 0.63 +1.6 448,997 - MPMX19_00450 0.63 -1.6 448,997 - MPMX19_00450 0.63 +0.3 448,997 - MPMX19_00450 0.63 +0.8 448,997 - MPMX19_00450 0.63 -1.1 448,997 - MPMX19_00450 0.63 +1.1 448,997 - MPMX19_00450 0.63 +0.1 448,997 - MPMX19_00450 0.63 -0.1 448,997 - MPMX19_00450 0.63 -0.7 448,997 - MPMX19_00450 0.63 -2.2 448,997 - MPMX19_00450 0.63 -2.2 448,997 - MPMX19_00450 0.63 +1.2 448,997 - MPMX19_00450 0.63 +0.5 449,173 + -0.3 449,173 + -0.7 449,173 + +0.8 449,173 + -0.2 449,173 + +0.1 449,173 + +1.1 449,173 + +0.3 449,173 + +0.0 449,173 + -0.1 449,173 + +1.8 449,173 + -1.1 449,173 + -1.7 449,173 + +0.3 449,173 + -0.4 449,173 + -0.5 449,173 + +0.4 449,173 + -0.7 449,173 + -0.4 449,173 + -2.2 449,173 + -0.9 449,173 + -0.2 449,173 + +1.4 449,173 + -0.1 449,173 + -0.5 449,173 + -0.9 449,173 + -0.5 449,173 + -1.1 449,173 + -1.2 449,174 - +0.6 449,174 - +0.0 449,174 - +0.8 449,174 - -1.3 449,174 - -1.7 449,174 - -0.8 449,174 - +0.8 449,174 - +0.2 449,174 - +1.5 449,174 - -0.2 449,174 - -0.9 449,174 - -0.5 449,174 - -1.6 449,174 - -1.8 449,174 - +0.9 449,174 - +1.1
Or see this region's nucleotide sequence