Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00343 and MPMX19_00344 are separated by 141 nucleotides MPMX19_00344 and MPMX19_00345 are separated by 25 nucleotides MPMX19_00345 and MPMX19_00346 are separated by 99 nucleotides MPMX19_00346 and MPMX19_00347 are separated by 874 nucleotides
MPMX19_00343: MPMX19_00343 - Peptide chain release factor RF2, at 351,869 to 352,837
_00343
MPMX19_00344: MPMX19_00344 - hypothetical protein, at 352,979 to 353,305
_00344
MPMX19_00345: MPMX19_00345 - hypothetical protein, at 353,331 to 353,567
_00345
MPMX19_00346: MPMX19_00346 - Trehalose-phosphate phosphatase, at 353,667 to 354,467
_00346
MPMX19_00347: MPMX19_00347 - hypothetical protein, at 355,342 to 355,680
_00347
Position (kb) 353
354
355 Strain fitness (log2 ratio) -2
-1
0
1 at 352.951 kb on + strand at 352.951 kb on + strand at 352.951 kb on + strand at 352.951 kb on + strand at 352.951 kb on + strand at 352.951 kb on + strand at 352.952 kb on - strand at 352.952 kb on - strand at 352.952 kb on - strand at 352.952 kb on - strand at 352.952 kb on - strand at 352.952 kb on - strand at 352.952 kb on - strand at 352.952 kb on - strand at 352.952 kb on - strand at 353.198 kb on + strand, within MPMX19_00344 at 353.199 kb on - strand, within MPMX19_00344 at 353.199 kb on - strand, within MPMX19_00344 at 353.199 kb on - strand, within MPMX19_00344 at 353.199 kb on - strand, within MPMX19_00344 at 353.199 kb on - strand, within MPMX19_00344 at 353.282 kb on + strand at 353.282 kb on + strand at 353.282 kb on + strand at 353.282 kb on + strand at 353.282 kb on + strand at 353.282 kb on + strand at 353.282 kb on + strand at 353.283 kb on - strand at 353.283 kb on - strand at 353.283 kb on - strand at 353.283 kb on - strand at 353.283 kb on - strand at 353.600 kb on + strand at 353.600 kb on + strand at 353.600 kb on + strand at 353.600 kb on + strand at 353.601 kb on - strand at 353.601 kb on - strand at 353.601 kb on - strand at 353.601 kb on - strand at 353.601 kb on - strand at 353.601 kb on - strand at 353.601 kb on - strand at 353.601 kb on - strand at 353.601 kb on - strand at 353.601 kb on - strand at 353.616 kb on + strand at 353.616 kb on + strand at 353.851 kb on + strand, within MPMX19_00346 at 353.851 kb on + strand, within MPMX19_00346 at 353.851 kb on + strand, within MPMX19_00346 at 353.852 kb on - strand, within MPMX19_00346 at 353.852 kb on - strand, within MPMX19_00346 at 353.852 kb on - strand, within MPMX19_00346 at 353.852 kb on - strand, within MPMX19_00346 at 353.852 kb on - strand, within MPMX19_00346 at 353.852 kb on - strand, within MPMX19_00346 at 353.852 kb on - strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.151 kb on + strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.152 kb on - strand, within MPMX19_00346 at 354.214 kb on + strand, within MPMX19_00346 at 354.214 kb on + strand, within MPMX19_00346 at 354.214 kb on + strand, within MPMX19_00346 at 354.214 kb on + strand, within MPMX19_00346 at 354.215 kb on - strand, within MPMX19_00346 at 354.215 kb on - strand, within MPMX19_00346 at 354.379 kb on + strand, within MPMX19_00346 at 354.379 kb on + strand, within MPMX19_00346 at 354.379 kb on + strand, within MPMX19_00346 at 354.379 kb on + strand, within MPMX19_00346 at 354.379 kb on + strand, within MPMX19_00346 at 354.379 kb on + strand, within MPMX19_00346 at 354.379 kb on + strand, within MPMX19_00346 at 354.379 kb on + strand, within MPMX19_00346 at 354.379 kb on + strand, within MPMX19_00346 at 354.379 kb on + strand, within MPMX19_00346 at 354.379 kb on + strand, within MPMX19_00346 at 354.380 kb on - strand, within MPMX19_00346 at 354.380 kb on - strand, within MPMX19_00346 at 354.380 kb on - strand, within MPMX19_00346 at 354.380 kb on - strand, within MPMX19_00346 at 354.380 kb on - strand, within MPMX19_00346 at 354.380 kb on - strand, within MPMX19_00346 at 354.380 kb on - strand, within MPMX19_00346 at 354.539 kb on - strand at 354.539 kb on - strand at 354.677 kb on + strand at 354.677 kb on + strand at 354.677 kb on + strand at 354.678 kb on - strand at 354.733 kb on + strand at 354.734 kb on - strand at 354.788 kb on - strand at 354.881 kb on + strand at 354.881 kb on + strand at 354.881 kb on + strand at 354.882 kb on - strand at 355.113 kb on + strand at 355.113 kb on + strand at 355.113 kb on + strand at 355.113 kb on + strand at 355.113 kb on + strand at 355.114 kb on - strand at 355.114 kb on - strand at 355.114 kb on - strand at 355.114 kb on - strand at 355.114 kb on - strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.115 kb on + strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.116 kb on - strand at 355.134 kb on + strand at 355.134 kb on + strand at 355.134 kb on + strand at 355.134 kb on + strand at 355.134 kb on + strand at 355.134 kb on + strand at 355.135 kb on - strand at 355.135 kb on - strand at 355.135 kb on - strand at 355.135 kb on - strand at 355.135 kb on - strand at 355.135 kb on - strand at 355.313 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 352,951 + -1.1 352,951 + +0.5 352,951 + +0.1 352,951 + -0.2 352,951 + -1.4 352,951 + -0.2 352,952 - -0.9 352,952 - -0.8 352,952 - -1.1 352,952 - -0.5 352,952 - -0.9 352,952 - -0.4 352,952 - +0.5 352,952 - -0.1 352,952 - -1.2 353,198 + MPMX19_00344 0.67 -1.5 353,199 - MPMX19_00344 0.67 +0.1 353,199 - MPMX19_00344 0.67 -1.4 353,199 - MPMX19_00344 0.67 +0.0 353,199 - MPMX19_00344 0.67 -0.4 353,199 - MPMX19_00344 0.67 -1.2 353,282 + -1.7 353,282 + -0.6 353,282 + -0.0 353,282 + +0.6 353,282 + -0.4 353,282 + -0.3 353,282 + +0.1 353,283 - -0.8 353,283 - -0.8 353,283 - +1.1 353,283 - -1.2 353,283 - +0.9 353,600 + -1.2 353,600 + -0.1 353,600 + -0.4 353,600 + -0.1 353,601 - -0.1 353,601 - +0.6 353,601 - -1.1 353,601 - +0.9 353,601 - -0.5 353,601 - +0.2 353,601 - +0.3 353,601 - -1.2 353,601 - -1.4 353,601 - +1.3 353,616 + +1.1 353,616 + -1.6 353,851 + MPMX19_00346 0.23 +0.3 353,851 + MPMX19_00346 0.23 -0.9 353,851 + MPMX19_00346 0.23 -1.4 353,852 - MPMX19_00346 0.23 +0.8 353,852 - MPMX19_00346 0.23 -0.1 353,852 - MPMX19_00346 0.23 -0.7 353,852 - MPMX19_00346 0.23 +0.7 353,852 - MPMX19_00346 0.23 -0.2 353,852 - MPMX19_00346 0.23 -0.0 353,852 - MPMX19_00346 0.23 +0.1 354,151 + MPMX19_00346 0.60 -1.5 354,151 + MPMX19_00346 0.60 -0.7 354,151 + MPMX19_00346 0.60 -2.0 354,151 + MPMX19_00346 0.60 +0.5 354,151 + MPMX19_00346 0.60 -2.2 354,151 + MPMX19_00346 0.60 -1.1 354,151 + MPMX19_00346 0.60 +1.1 354,151 + MPMX19_00346 0.60 -0.4 354,151 + MPMX19_00346 0.60 +1.7 354,151 + MPMX19_00346 0.60 +0.5 354,151 + MPMX19_00346 0.60 -1.2 354,151 + MPMX19_00346 0.60 -0.1 354,151 + MPMX19_00346 0.60 -0.6 354,151 + MPMX19_00346 0.60 -0.3 354,151 + MPMX19_00346 0.60 -1.4 354,152 - MPMX19_00346 0.61 -0.9 354,152 - MPMX19_00346 0.61 -0.6 354,152 - MPMX19_00346 0.61 +0.3 354,152 - MPMX19_00346 0.61 -1.9 354,152 - MPMX19_00346 0.61 -0.4 354,152 - MPMX19_00346 0.61 -1.6 354,152 - MPMX19_00346 0.61 -0.8 354,152 - MPMX19_00346 0.61 -1.4 354,152 - MPMX19_00346 0.61 -0.2 354,152 - MPMX19_00346 0.61 -0.1 354,152 - MPMX19_00346 0.61 +1.0 354,152 - MPMX19_00346 0.61 -0.3 354,152 - MPMX19_00346 0.61 +0.7 354,152 - MPMX19_00346 0.61 -1.1 354,152 - MPMX19_00346 0.61 -0.9 354,152 - MPMX19_00346 0.61 -1.4 354,152 - MPMX19_00346 0.61 -0.0 354,152 - MPMX19_00346 0.61 -1.6 354,152 - MPMX19_00346 0.61 -1.8 354,152 - MPMX19_00346 0.61 -1.4 354,214 + MPMX19_00346 0.68 -1.9 354,214 + MPMX19_00346 0.68 +0.5 354,214 + MPMX19_00346 0.68 -0.9 354,214 + MPMX19_00346 0.68 -0.8 354,215 - MPMX19_00346 0.68 +0.4 354,215 - MPMX19_00346 0.68 -1.9 354,379 + MPMX19_00346 0.89 -1.6 354,379 + MPMX19_00346 0.89 -0.2 354,379 + MPMX19_00346 0.89 -0.7 354,379 + MPMX19_00346 0.89 -0.9 354,379 + MPMX19_00346 0.89 -2.1 354,379 + MPMX19_00346 0.89 -0.9 354,379 + MPMX19_00346 0.89 +0.3 354,379 + MPMX19_00346 0.89 +0.1 354,379 + MPMX19_00346 0.89 -0.2 354,379 + MPMX19_00346 0.89 -0.7 354,379 + MPMX19_00346 0.89 -0.5 354,380 - MPMX19_00346 0.89 -0.5 354,380 - MPMX19_00346 0.89 -0.7 354,380 - MPMX19_00346 0.89 -0.5 354,380 - MPMX19_00346 0.89 +0.6 354,380 - MPMX19_00346 0.89 -2.4 354,380 - MPMX19_00346 0.89 -1.2 354,380 - MPMX19_00346 0.89 -0.5 354,539 - -0.7 354,539 - -0.5 354,677 + -2.0 354,677 + -0.5 354,677 + -1.2 354,678 - -1.6 354,733 + -0.2 354,734 - -1.1 354,788 - +1.4 354,881 + -2.7 354,881 + -1.6 354,881 + +0.2 354,882 - -0.8 355,113 + -0.2 355,113 + -0.4 355,113 + -0.6 355,113 + -1.5 355,113 + -1.0 355,114 - -1.8 355,114 - -1.0 355,114 - -1.6 355,114 - +0.5 355,114 - +0.5 355,115 + -0.8 355,115 + -1.1 355,115 + +1.0 355,115 + -0.7 355,115 + -0.9 355,115 + -2.4 355,115 + -0.6 355,115 + -0.1 355,115 + +1.6 355,115 + -0.9 355,115 + +0.6 355,115 + -1.8 355,115 + -1.2 355,115 + +0.0 355,115 + -0.9 355,115 + +0.7 355,116 - -1.4 355,116 - -0.3 355,116 - -1.5 355,116 - +0.4 355,116 - -0.4 355,116 - -0.5 355,116 - -1.8 355,116 - -0.2 355,116 - -0.2 355,116 - -0.8 355,116 - +0.8 355,116 - -1.1 355,116 - -0.1 355,116 - +0.5 355,116 - -0.4 355,116 - -0.2 355,116 - +0.0 355,116 - -0.1 355,116 - +0.5 355,134 + -1.8 355,134 + -0.4 355,134 + +0.3 355,134 + -0.9 355,134 + +0.3 355,134 + -1.0 355,135 - -0.4 355,135 - -0.2 355,135 - -1.4 355,135 - +0.1 355,135 - -0.8 355,135 - -0.7 355,313 + -0.7
Or see this region's nucleotide sequence