Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00326 and MPMX19_00327 are separated by 101 nucleotides MPMX19_00327 and MPMX19_00328 are separated by 8 nucleotides MPMX19_00328 and MPMX19_00329 are separated by 15 nucleotides MPMX19_00329 and MPMX19_00330 overlap by 35 nucleotides MPMX19_00330 and MPMX19_00331 are separated by 105 nucleotides MPMX19_00331 and MPMX19_00332 are separated by 12 nucleotides
MPMX19_00326: MPMX19_00326 - 50S ribosomal protein L19, at 330,344 to 330,739
_00326
MPMX19_00327: MPMX19_00327 - 50S ribosomal protein L34, at 330,841 to 330,975
_00327
MPMX19_00328: MPMX19_00328 - Ribonuclease P protein component, at 330,984 to 331,370
_00328
MPMX19_00329: MPMX19_00329 - Putative membrane protein insertion efficiency factor, at 331,386 to 331,715
_00329
MPMX19_00330: MPMX19_00330 - Membrane protein insertase YidC, at 331,681 to 333,498
_00330
MPMX19_00331: MPMX19_00331 - GTP-binding protein EngB, at 333,604 to 334,287
_00331
MPMX19_00332: MPMX19_00332 - Na(+)/H(+)-K(+) antiporter GerN, at 334,300 to 335,598
_00332
Position (kb) 331
332
333
334 Strain fitness (log2 ratio) -2
-1
0
1 at 331.368 kb on + strand at 331.368 kb on + strand at 331.368 kb on + strand at 331.369 kb on - strand at 331.369 kb on - strand at 331.369 kb on - strand at 331.369 kb on - strand at 331.369 kb on - strand at 331.369 kb on - strand at 331.440 kb on + strand, within MPMX19_00329 at 331.440 kb on + strand, within MPMX19_00329 at 331.440 kb on + strand, within MPMX19_00329 at 331.440 kb on + strand, within MPMX19_00329 at 331.440 kb on + strand, within MPMX19_00329 at 331.440 kb on + strand, within MPMX19_00329 at 331.440 kb on + strand, within MPMX19_00329 at 331.441 kb on - strand, within MPMX19_00329 at 331.441 kb on - strand, within MPMX19_00329 at 331.441 kb on - strand, within MPMX19_00329 at 331.441 kb on - strand, within MPMX19_00329 at 331.441 kb on - strand, within MPMX19_00329 at 331.441 kb on - strand, within MPMX19_00329 at 331.509 kb on + strand, within MPMX19_00329 at 331.509 kb on + strand, within MPMX19_00329 at 331.509 kb on + strand, within MPMX19_00329 at 331.509 kb on + strand, within MPMX19_00329 at 331.509 kb on + strand, within MPMX19_00329 at 331.509 kb on + strand, within MPMX19_00329 at 331.509 kb on + strand, within MPMX19_00329 at 331.510 kb on - strand, within MPMX19_00329 at 331.510 kb on - strand, within MPMX19_00329 at 331.510 kb on - strand, within MPMX19_00329 at 331.510 kb on - strand, within MPMX19_00329 at 333.568 kb on + strand at 333.568 kb on + strand at 333.568 kb on + strand at 334.285 kb on + strand at 334.285 kb on + strand at 334.286 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 331,368 + -0.2 331,368 + -0.2 331,368 + +0.1 331,369 - -1.4 331,369 - +0.7 331,369 - -1.3 331,369 - -1.1 331,369 - +0.8 331,369 - -0.5 331,440 + MPMX19_00329 0.16 -0.6 331,440 + MPMX19_00329 0.16 +0.5 331,440 + MPMX19_00329 0.16 +0.2 331,440 + MPMX19_00329 0.16 -0.9 331,440 + MPMX19_00329 0.16 +0.9 331,440 + MPMX19_00329 0.16 +0.1 331,440 + MPMX19_00329 0.16 -0.6 331,441 - MPMX19_00329 0.17 -1.2 331,441 - MPMX19_00329 0.17 -1.1 331,441 - MPMX19_00329 0.17 -0.3 331,441 - MPMX19_00329 0.17 -0.4 331,441 - MPMX19_00329 0.17 -2.0 331,441 - MPMX19_00329 0.17 +0.7 331,509 + MPMX19_00329 0.37 -1.7 331,509 + MPMX19_00329 0.37 -0.1 331,509 + MPMX19_00329 0.37 -1.2 331,509 + MPMX19_00329 0.37 -2.4 331,509 + MPMX19_00329 0.37 -1.1 331,509 + MPMX19_00329 0.37 -1.2 331,509 + MPMX19_00329 0.37 -0.8 331,510 - MPMX19_00329 0.38 -0.7 331,510 - MPMX19_00329 0.38 -0.3 331,510 - MPMX19_00329 0.38 +0.9 331,510 - MPMX19_00329 0.38 -1.3 333,568 + -0.6 333,568 + -0.6 333,568 + -1.4 334,285 + -0.5 334,285 + -0.5 334,286 - -0.6
Or see this region's nucleotide sequence