Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00318 and MPMX19_00319 are separated by 31 nucleotides MPMX19_00319 and MPMX19_00320 are separated by 146 nucleotides MPMX19_00320 and MPMX19_00321 are separated by 25 nucleotides
MPMX19_00318: MPMX19_00318 - hypothetical protein, at 322,552 to 323,880
_00318
MPMX19_00319: MPMX19_00319 - hypothetical protein, at 323,912 to 324,544
_00319
MPMX19_00320: MPMX19_00320 - hypothetical protein, at 324,691 to 325,335
_00320
MPMX19_00321: MPMX19_00321 - hypothetical protein, at 325,361 to 326,713
_00321
Position (kb) 323
324
325 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 323.070 kb on + strand, within MPMX19_00318 at 323.071 kb on - strand, within MPMX19_00318 at 323.071 kb on - strand, within MPMX19_00318 at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.816 kb on - strand at 323.816 kb on - strand at 323.912 kb on - strand at 324.194 kb on + strand, within MPMX19_00319 at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.487 kb on + strand at 324.488 kb on - strand at 324.488 kb on - strand at 324.586 kb on + strand at 324.586 kb on + strand at 324.587 kb on - strand at 324.587 kb on - strand at 324.587 kb on - strand at 324.600 kb on + strand at 324.600 kb on + strand at 324.600 kb on + strand at 324.600 kb on + strand at 324.600 kb on + strand at 324.600 kb on + strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.652 kb on + strand at 324.653 kb on - strand at 324.653 kb on - strand at 325.195 kb on + strand, within MPMX19_00320 at 325.195 kb on + strand, within MPMX19_00320 at 325.195 kb on + strand, within MPMX19_00320 at 325.195 kb on + strand, within MPMX19_00320 at 325.196 kb on - strand, within MPMX19_00320 at 325.196 kb on - strand, within MPMX19_00320 at 325.288 kb on + strand at 325.289 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 323,070 + MPMX19_00318 0.39 -0.3 323,071 - MPMX19_00318 0.39 +1.4 323,071 - MPMX19_00318 0.39 -0.6 323,793 + -0.7 323,793 + +0.3 323,793 + +0.1 323,793 + -1.1 323,793 + -0.3 323,793 + -0.9 323,793 + -0.9 323,793 + -0.2 323,793 + +0.1 323,793 + -0.7 323,793 + +0.5 323,794 - +0.4 323,794 - -0.0 323,794 - -0.3 323,794 - +1.1 323,794 - +0.9 323,794 - -0.3 323,794 - +0.9 323,794 - +0.5 323,794 - -1.0 323,794 - -0.4 323,794 - -0.1 323,794 - +0.5 323,794 - +0.3 323,816 - -1.7 323,816 - +1.5 323,912 - +0.4 324,194 + MPMX19_00319 0.45 -3.0 324,485 + -1.3 324,485 + +0.7 324,485 + -0.1 324,485 + -0.5 324,485 + -0.5 324,485 + +1.5 324,485 + -0.9 324,485 + +0.3 324,485 + -1.2 324,485 + -1.1 324,485 + -0.1 324,485 + +0.9 324,486 - -1.1 324,486 - -0.2 324,486 - -2.6 324,486 - -0.2 324,486 - -1.2 324,486 - -0.9 324,486 - -0.8 324,486 - +0.2 324,486 - -1.1 324,486 - +0.5 324,486 - -1.2 324,486 - -1.9 324,486 - -1.1 324,487 + +0.1 324,488 - -0.6 324,488 - +0.5 324,586 + -1.3 324,586 + -0.9 324,587 - +0.2 324,587 - -1.1 324,587 - -0.2 324,600 + +1.1 324,600 + -0.1 324,600 + -0.2 324,600 + -0.2 324,600 + -1.5 324,600 + -1.9 324,601 - +1.1 324,601 - +0.1 324,601 - -1.0 324,601 - -0.6 324,601 - -0.5 324,601 - +1.1 324,601 - -0.5 324,601 - -0.1 324,601 - -0.4 324,601 - +0.5 324,652 + -1.2 324,653 - -0.1 324,653 - +0.0 325,195 + MPMX19_00320 0.78 -0.5 325,195 + MPMX19_00320 0.78 -0.6 325,195 + MPMX19_00320 0.78 -0.1 325,195 + MPMX19_00320 0.78 -0.5 325,196 - MPMX19_00320 0.78 -0.7 325,196 - MPMX19_00320 0.78 -0.7 325,288 + -0.8 325,289 - -0.3
Or see this region's nucleotide sequence