Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00296 and MPMX19_00297 are separated by 40 nucleotides MPMX19_00297 and MPMX19_00298 are separated by 322 nucleotides
MPMX19_00296: MPMX19_00296 - (S)-sulfolactate dehydrogenase, at 295,892 to 296,845
_00296
MPMX19_00297: MPMX19_00297 - 4-carboxy-4-hydroxy-2-oxoadipate aldolase, at 296,886 to 297,554
_00297
MPMX19_00298: MPMX19_00298 - hypothetical protein, at 297,877 to 298,935
_00298
Position (kb) 296
297
298 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.223 kb on + strand, within MPMX19_00296 at 296.223 kb on + strand, within MPMX19_00296 at 296.223 kb on + strand, within MPMX19_00296 at 296.223 kb on + strand, within MPMX19_00296 at 296.223 kb on + strand, within MPMX19_00296 at 296.224 kb on - strand, within MPMX19_00296 at 296.224 kb on - strand, within MPMX19_00296 at 296.224 kb on - strand, within MPMX19_00296 at 296.224 kb on - strand, within MPMX19_00296 at 296.224 kb on - strand, within MPMX19_00296 at 296.263 kb on + strand, within MPMX19_00296 at 296.263 kb on + strand, within MPMX19_00296 at 296.263 kb on + strand, within MPMX19_00296 at 296.263 kb on + strand, within MPMX19_00296 at 296.263 kb on + strand, within MPMX19_00296 at 296.263 kb on + strand, within MPMX19_00296 at 296.263 kb on + strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.754 kb on + strand at 296.754 kb on + strand at 296.754 kb on + strand at 296.754 kb on + strand at 296.754 kb on + strand at 296.754 kb on + strand at 296.754 kb on + strand at 296.754 kb on + strand at 296.754 kb on + strand at 296.754 kb on + strand at 296.754 kb on + strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.769 kb on + strand at 296.769 kb on + strand at 296.769 kb on + strand at 296.769 kb on + strand at 296.770 kb on - strand at 296.770 kb on - strand at 296.770 kb on - strand at 296.770 kb on - strand at 296.770 kb on - strand at 296.914 kb on + strand at 296.914 kb on + strand at 296.914 kb on + strand at 296.914 kb on + strand at 296.914 kb on + strand at 296.914 kb on + strand at 296.914 kb on + strand at 296.915 kb on - strand at 296.915 kb on - strand at 296.915 kb on - strand at 296.971 kb on + strand, within MPMX19_00297 at 296.972 kb on - strand, within MPMX19_00297 at 297.353 kb on + strand, within MPMX19_00297 at 297.354 kb on - strand, within MPMX19_00297 at 297.626 kb on - strand at 297.760 kb on - strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.876 kb on + strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.877 kb on - strand at 297.882 kb on + strand at 297.882 kb on + strand at 297.882 kb on + strand at 297.882 kb on + strand at 297.882 kb on + strand at 297.882 kb on + strand at 297.882 kb on + strand at 297.882 kb on + strand at 297.882 kb on + strand at 297.883 kb on - strand at 297.883 kb on - strand at 297.883 kb on - strand at 297.883 kb on - strand at 297.883 kb on - strand at 297.883 kb on - strand at 297.883 kb on - strand at 297.883 kb on - strand at 297.883 kb on - strand at 297.883 kb on - strand at 297.883 kb on - strand at 297.883 kb on - strand at 297.883 kb on - strand at 297.883 kb on - strand at 298.045 kb on + strand, within MPMX19_00298 at 298.079 kb on - strand, within MPMX19_00298 at 298.079 kb on - strand, within MPMX19_00298 at 298.079 kb on - strand, within MPMX19_00298 at 298.234 kb on + strand, within MPMX19_00298 at 298.234 kb on + strand, within MPMX19_00298 at 298.234 kb on + strand, within MPMX19_00298 at 298.234 kb on + strand, within MPMX19_00298 at 298.234 kb on + strand, within MPMX19_00298 at 298.234 kb on + strand, within MPMX19_00298 at 298.234 kb on + strand, within MPMX19_00298 at 298.324 kb on + strand, within MPMX19_00298 at 298.324 kb on + strand, within MPMX19_00298 at 298.324 kb on + strand, within MPMX19_00298 at 298.324 kb on + strand, within MPMX19_00298 at 298.324 kb on + strand, within MPMX19_00298 at 298.324 kb on + strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 296,064 + MPMX19_00296 0.18 +0.9 296,064 + MPMX19_00296 0.18 -0.2 296,064 + MPMX19_00296 0.18 +1.1 296,064 + MPMX19_00296 0.18 -0.5 296,064 + MPMX19_00296 0.18 -0.1 296,064 + MPMX19_00296 0.18 +0.8 296,064 + MPMX19_00296 0.18 -0.2 296,064 + MPMX19_00296 0.18 +0.1 296,064 + MPMX19_00296 0.18 -0.7 296,064 + MPMX19_00296 0.18 +0.3 296,064 + MPMX19_00296 0.18 -0.0 296,065 - MPMX19_00296 0.18 -1.8 296,065 - MPMX19_00296 0.18 -0.9 296,065 - MPMX19_00296 0.18 +0.4 296,065 - MPMX19_00296 0.18 -1.5 296,065 - MPMX19_00296 0.18 +0.2 296,065 - MPMX19_00296 0.18 -0.1 296,065 - MPMX19_00296 0.18 +0.3 296,065 - MPMX19_00296 0.18 -0.6 296,065 - MPMX19_00296 0.18 -0.9 296,065 - MPMX19_00296 0.18 -0.9 296,065 - MPMX19_00296 0.18 -0.7 296,065 - MPMX19_00296 0.18 +0.3 296,223 + MPMX19_00296 0.35 -2.0 296,223 + MPMX19_00296 0.35 +0.2 296,223 + MPMX19_00296 0.35 -1.9 296,223 + MPMX19_00296 0.35 -1.7 296,223 + MPMX19_00296 0.35 -1.6 296,224 - MPMX19_00296 0.35 -1.3 296,224 - MPMX19_00296 0.35 +0.5 296,224 - MPMX19_00296 0.35 -0.7 296,224 - MPMX19_00296 0.35 +1.0 296,224 - MPMX19_00296 0.35 +0.3 296,263 + MPMX19_00296 0.39 -0.0 296,263 + MPMX19_00296 0.39 -1.2 296,263 + MPMX19_00296 0.39 -0.8 296,263 + MPMX19_00296 0.39 +0.9 296,263 + MPMX19_00296 0.39 +0.1 296,263 + MPMX19_00296 0.39 +0.4 296,263 + MPMX19_00296 0.39 -1.0 296,264 - MPMX19_00296 0.39 +1.4 296,264 - MPMX19_00296 0.39 +0.4 296,264 - MPMX19_00296 0.39 +0.8 296,264 - MPMX19_00296 0.39 -1.4 296,264 - MPMX19_00296 0.39 +0.1 296,264 - MPMX19_00296 0.39 +0.1 296,264 - MPMX19_00296 0.39 +0.7 296,264 - MPMX19_00296 0.39 +0.4 296,264 - MPMX19_00296 0.39 -0.8 296,264 - MPMX19_00296 0.39 -1.7 296,490 + MPMX19_00296 0.63 -0.2 296,490 + MPMX19_00296 0.63 -1.6 296,490 + MPMX19_00296 0.63 +0.2 296,490 + MPMX19_00296 0.63 +0.3 296,490 + MPMX19_00296 0.63 -0.5 296,490 + MPMX19_00296 0.63 -1.0 296,490 + MPMX19_00296 0.63 +0.5 296,490 + MPMX19_00296 0.63 -0.3 296,490 + MPMX19_00296 0.63 -1.2 296,490 + MPMX19_00296 0.63 -1.3 296,490 + MPMX19_00296 0.63 -0.6 296,490 + MPMX19_00296 0.63 +0.4 296,490 + MPMX19_00296 0.63 -0.9 296,490 + MPMX19_00296 0.63 +0.1 296,490 + MPMX19_00296 0.63 +0.9 296,491 - MPMX19_00296 0.63 -0.1 296,491 - MPMX19_00296 0.63 +0.1 296,491 - MPMX19_00296 0.63 -0.4 296,491 - MPMX19_00296 0.63 -0.2 296,491 - MPMX19_00296 0.63 +0.3 296,491 - MPMX19_00296 0.63 +0.9 296,491 - MPMX19_00296 0.63 -1.7 296,491 - MPMX19_00296 0.63 +0.3 296,491 - MPMX19_00296 0.63 +0.0 296,491 - MPMX19_00296 0.63 +0.0 296,491 - MPMX19_00296 0.63 +0.5 296,491 - MPMX19_00296 0.63 +0.6 296,491 - MPMX19_00296 0.63 +0.4 296,491 - MPMX19_00296 0.63 -0.6 296,733 + MPMX19_00296 0.88 -1.6 296,733 + MPMX19_00296 0.88 -0.4 296,733 + MPMX19_00296 0.88 +0.5 296,733 + MPMX19_00296 0.88 +0.1 296,733 + MPMX19_00296 0.88 -0.7 296,733 + MPMX19_00296 0.88 -0.9 296,733 + MPMX19_00296 0.88 -0.3 296,733 + MPMX19_00296 0.88 -1.7 296,733 + MPMX19_00296 0.88 -1.5 296,733 + MPMX19_00296 0.88 -2.0 296,734 - MPMX19_00296 0.88 -1.7 296,734 - MPMX19_00296 0.88 +0.8 296,734 - MPMX19_00296 0.88 -0.6 296,734 - MPMX19_00296 0.88 -0.7 296,734 - MPMX19_00296 0.88 -0.4 296,734 - MPMX19_00296 0.88 -0.2 296,734 - MPMX19_00296 0.88 -0.7 296,734 - MPMX19_00296 0.88 -1.4 296,734 - MPMX19_00296 0.88 +0.4 296,734 - MPMX19_00296 0.88 -0.1 296,734 - MPMX19_00296 0.88 +0.8 296,734 - MPMX19_00296 0.88 +0.4 296,734 - MPMX19_00296 0.88 -0.8 296,734 - MPMX19_00296 0.88 -1.0 296,734 - MPMX19_00296 0.88 -1.0 296,734 - MPMX19_00296 0.88 -0.1 296,734 - MPMX19_00296 0.88 +0.1 296,754 + -0.4 296,754 + -1.7 296,754 + +0.8 296,754 + -0.7 296,754 + -0.8 296,754 + -0.3 296,754 + -1.3 296,754 + +0.4 296,754 + -2.7 296,754 + +0.5 296,754 + -0.6 296,755 - -0.7 296,755 - +1.5 296,755 - +1.7 296,755 - +0.8 296,755 - -2.1 296,755 - -0.5 296,755 - -0.7 296,755 - -0.3 296,755 - -1.8 296,755 - -0.1 296,755 - +0.1 296,755 - +0.0 296,755 - -0.9 296,755 - +0.9 296,755 - +0.4 296,769 + +0.8 296,769 + -1.7 296,769 + +0.4 296,769 + -0.7 296,770 - -1.6 296,770 - +0.3 296,770 - -0.0 296,770 - -1.2 296,770 - -1.2 296,914 + -0.6 296,914 + +0.5 296,914 + -0.1 296,914 + +0.2 296,914 + -0.3 296,914 + -0.9 296,914 + -0.6 296,915 - -0.3 296,915 - +0.0 296,915 - -0.6 296,971 + MPMX19_00297 0.13 -0.5 296,972 - MPMX19_00297 0.13 -1.6 297,353 + MPMX19_00297 0.70 -1.3 297,354 - MPMX19_00297 0.70 +0.0 297,626 - -2.4 297,760 - +0.7 297,876 + -0.9 297,876 + -0.6 297,876 + -0.3 297,876 + -0.7 297,876 + -0.5 297,876 + -0.8 297,876 + +0.3 297,876 + -0.5 297,876 + +0.8 297,876 + +0.0 297,876 + -1.1 297,876 + -0.9 297,876 + -0.0 297,876 + -0.3 297,876 + +0.3 297,876 + -0.9 297,876 + -1.3 297,876 + -0.2 297,876 + +0.5 297,876 + -0.9 297,876 + -0.6 297,876 + -0.2 297,876 + +0.2 297,876 + -0.1 297,876 + +0.3 297,876 + -1.0 297,876 + +0.9 297,876 + +0.7 297,876 + -0.9 297,876 + -1.6 297,876 + +0.3 297,877 - -2.8 297,877 - +1.1 297,877 - -1.0 297,877 - -0.9 297,877 - -0.6 297,877 - -1.0 297,877 - -0.9 297,877 - -0.0 297,877 - +0.1 297,877 - -0.1 297,877 - -0.5 297,877 - +0.6 297,877 - -1.3 297,877 - -0.7 297,877 - -0.7 297,877 - +1.1 297,877 - -0.6 297,877 - +1.4 297,877 - -1.2 297,877 - -1.3 297,877 - -1.4 297,877 - -1.3 297,877 - -1.6 297,877 - -1.0 297,877 - -0.5 297,882 + +0.2 297,882 + +0.1 297,882 + -0.3 297,882 + -1.0 297,882 + +0.1 297,882 + -0.5 297,882 + -0.6 297,882 + +0.7 297,882 + +0.1 297,883 - -0.2 297,883 - -1.5 297,883 - +0.9 297,883 - -0.5 297,883 - +0.4 297,883 - -0.9 297,883 - -0.5 297,883 - -0.7 297,883 - -0.0 297,883 - -2.6 297,883 - -0.8 297,883 - +0.1 297,883 - -0.1 297,883 - +0.5 298,045 + MPMX19_00298 0.16 -1.3 298,079 - MPMX19_00298 0.19 +0.8 298,079 - MPMX19_00298 0.19 -0.4 298,079 - MPMX19_00298 0.19 -1.2 298,234 + MPMX19_00298 0.34 -0.9 298,234 + MPMX19_00298 0.34 +0.6 298,234 + MPMX19_00298 0.34 -1.9 298,234 + MPMX19_00298 0.34 -0.7 298,234 + MPMX19_00298 0.34 -0.2 298,234 + MPMX19_00298 0.34 -0.8 298,234 + MPMX19_00298 0.34 -2.1 298,324 + MPMX19_00298 0.42 -0.7 298,324 + MPMX19_00298 0.42 +1.1 298,324 + MPMX19_00298 0.42 -0.5 298,324 + MPMX19_00298 0.42 -0.8 298,324 + MPMX19_00298 0.42 -1.0 298,324 + MPMX19_00298 0.42 -0.2 298,325 - MPMX19_00298 0.42 -0.3 298,325 - MPMX19_00298 0.42 -1.6 298,325 - MPMX19_00298 0.42 +0.8 298,325 - MPMX19_00298 0.42 +0.8 298,325 - MPMX19_00298 0.42 -1.9 298,325 - MPMX19_00298 0.42 -0.2 298,325 - MPMX19_00298 0.42 -0.6 298,325 - MPMX19_00298 0.42 -0.6 298,325 - MPMX19_00298 0.42 -0.9 298,325 - MPMX19_00298 0.42 +0.3
Or see this region's nucleotide sequence