Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00262

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00260 and MPMX19_00261 overlap by 4 nucleotidesMPMX19_00261 and MPMX19_00262 are separated by 120 nucleotidesMPMX19_00262 and MPMX19_00263 are separated by 161 nucleotidesMPMX19_00263 and MPMX19_00264 are separated by 29 nucleotides MPMX19_00260: MPMX19_00260 - Hydrogen cyanide synthase subunit HcnC, at 262,724 to 263,905 _00260 MPMX19_00261: MPMX19_00261 - hypothetical protein, at 263,902 to 264,123 _00261 MPMX19_00262: MPMX19_00262 - Thiazole synthase, at 264,244 to 265,041 _00262 MPMX19_00263: MPMX19_00263 - hypothetical protein, at 265,203 to 265,646 _00263 MPMX19_00264: MPMX19_00264 - hypothetical protein, at 265,676 to 266,140 _00264 Position (kb) 264 265 266Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 263.445 kb on + strand, within MPMX19_00260at 263.446 kb on - strand, within MPMX19_00260at 263.531 kb on + strand, within MPMX19_00260at 263.531 kb on + strand, within MPMX19_00260at 263.531 kb on + strand, within MPMX19_00260at 263.531 kb on + strand, within MPMX19_00260at 263.532 kb on - strand, within MPMX19_00260at 263.532 kb on - strand, within MPMX19_00260at 264.661 kb on + strand, within MPMX19_00262at 264.661 kb on + strand, within MPMX19_00262at 264.661 kb on + strand, within MPMX19_00262at 264.662 kb on - strand, within MPMX19_00262at 264.662 kb on - strand, within MPMX19_00262at 265.043 kb on - strandat 265.043 kb on - strandat 265.419 kb on + strand, within MPMX19_00263at 265.419 kb on + strand, within MPMX19_00263at 265.419 kb on + strand, within MPMX19_00263at 265.420 kb on - strand, within MPMX19_00263at 265.420 kb on - strand, within MPMX19_00263at 265.844 kb on + strand, within MPMX19_00264at 265.844 kb on + strand, within MPMX19_00264at 265.844 kb on + strand, within MPMX19_00264at 265.844 kb on + strand, within MPMX19_00264at 265.844 kb on + strand, within MPMX19_00264at 265.844 kb on + strand, within MPMX19_00264at 265.844 kb on + strand, within MPMX19_00264at 265.844 kb on + strand, within MPMX19_00264at 265.844 kb on + strand, within MPMX19_00264at 265.844 kb on + strand, within MPMX19_00264at 265.844 kb on + strand, within MPMX19_00264at 265.844 kb on + strand, within MPMX19_00264at 265.844 kb on + strand, within MPMX19_00264at 265.845 kb on - strand, within MPMX19_00264at 265.845 kb on - strand, within MPMX19_00264at 265.845 kb on - strand, within MPMX19_00264at 265.845 kb on - strand, within MPMX19_00264at 265.845 kb on - strand, within MPMX19_00264at 265.845 kb on - strand, within MPMX19_00264at 265.845 kb on - strand, within MPMX19_00264at 265.845 kb on - strand, within MPMX19_00264at 265.845 kb on - strand, within MPMX19_00264at 265.845 kb on - strand, within MPMX19_00264at 265.845 kb on - strand, within MPMX19_00264at 265.907 kb on + strand, within MPMX19_00264at 265.907 kb on + strand, within MPMX19_00264at 265.907 kb on + strand, within MPMX19_00264at 265.907 kb on + strand, within MPMX19_00264at 265.907 kb on + strand, within MPMX19_00264at 265.907 kb on + strand, within MPMX19_00264at 265.907 kb on + strand, within MPMX19_00264at 265.907 kb on + strand, within MPMX19_00264at 265.907 kb on + strand, within MPMX19_00264at 265.907 kb on + strand, within MPMX19_00264at 265.907 kb on + strand, within MPMX19_00264at 265.907 kb on + strand, within MPMX19_00264at 265.907 kb on + strand, within MPMX19_00264at 265.907 kb on + strand, within MPMX19_00264at 265.907 kb on + strand, within MPMX19_00264at 265.907 kb on + strand, within MPMX19_00264at 265.907 kb on + strand, within MPMX19_00264at 265.907 kb on + strand, within MPMX19_00264at 265.907 kb on + strand, within MPMX19_00264at 265.907 kb on + strand, within MPMX19_00264at 265.907 kb on + strand, within MPMX19_00264at 265.907 kb on + strand, within MPMX19_00264at 265.907 kb on + strand, within MPMX19_00264at 265.907 kb on + strand, within MPMX19_00264at 265.907 kb on + strand, within MPMX19_00264at 265.908 kb on - strand, within MPMX19_00264at 265.908 kb on - strand, within MPMX19_00264at 265.908 kb on - strand, within MPMX19_00264at 265.908 kb on - strand, within MPMX19_00264at 265.908 kb on - strand, within MPMX19_00264at 265.908 kb on - strand, within MPMX19_00264at 265.908 kb on - strand, within MPMX19_00264at 265.908 kb on - strand, within MPMX19_00264at 265.908 kb on - strand, within MPMX19_00264at 265.908 kb on - strand, within MPMX19_00264at 265.908 kb on - strand, within MPMX19_00264at 265.908 kb on - strand, within MPMX19_00264at 265.908 kb on - strand, within MPMX19_00264at 265.908 kb on - strand, within MPMX19_00264at 265.908 kb on - strand, within MPMX19_00264at 265.908 kb on - strand, within MPMX19_00264at 265.908 kb on - strand, within MPMX19_00264at 265.908 kb on - strand, within MPMX19_00264at 265.908 kb on - strand, within MPMX19_00264at 265.908 kb on - strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.910 kb on + strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264at 265.911 kb on - strand, within MPMX19_00264

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
263,445 + MPMX19_00260 0.61 -1.2
263,446 - MPMX19_00260 0.61 -0.2
263,531 + MPMX19_00260 0.68 -0.8
263,531 + MPMX19_00260 0.68 -1.0
263,531 + MPMX19_00260 0.68 -0.4
263,531 + MPMX19_00260 0.68 -1.3
263,532 - MPMX19_00260 0.68 -1.0
263,532 - MPMX19_00260 0.68 +0.2
264,661 + MPMX19_00262 0.52 -1.0
264,661 + MPMX19_00262 0.52 -0.2
264,661 + MPMX19_00262 0.52 -1.2
264,662 - MPMX19_00262 0.52 -2.2
264,662 - MPMX19_00262 0.52 -0.7
265,043 - -0.2
265,043 - +1.6
265,419 + MPMX19_00263 0.49 -0.9
265,419 + MPMX19_00263 0.49 -2.9
265,419 + MPMX19_00263 0.49 -1.9
265,420 - MPMX19_00263 0.49 -0.4
265,420 - MPMX19_00263 0.49 -1.8
265,844 + MPMX19_00264 0.36 -1.8
265,844 + MPMX19_00264 0.36 -0.6
265,844 + MPMX19_00264 0.36 -0.7
265,844 + MPMX19_00264 0.36 -0.7
265,844 + MPMX19_00264 0.36 -1.8
265,844 + MPMX19_00264 0.36 -2.2
265,844 + MPMX19_00264 0.36 -0.2
265,844 + MPMX19_00264 0.36 +0.1
265,844 + MPMX19_00264 0.36 +0.9
265,844 + MPMX19_00264 0.36 -0.6
265,844 + MPMX19_00264 0.36 -2.4
265,844 + MPMX19_00264 0.36 -0.7
265,844 + MPMX19_00264 0.36 -1.6
265,845 - MPMX19_00264 0.36 -0.9
265,845 - MPMX19_00264 0.36 -0.9
265,845 - MPMX19_00264 0.36 -1.0
265,845 - MPMX19_00264 0.36 -0.3
265,845 - MPMX19_00264 0.36 -1.7
265,845 - MPMX19_00264 0.36 -0.8
265,845 - MPMX19_00264 0.36 +0.9
265,845 - MPMX19_00264 0.36 +1.5
265,845 - MPMX19_00264 0.36 +0.7
265,845 - MPMX19_00264 0.36 -0.4
265,845 - MPMX19_00264 0.36 -0.7
265,907 + MPMX19_00264 0.50 +0.1
265,907 + MPMX19_00264 0.50 -0.7
265,907 + MPMX19_00264 0.50 -0.3
265,907 + MPMX19_00264 0.50 -0.1
265,907 + MPMX19_00264 0.50 -0.1
265,907 + MPMX19_00264 0.50 +0.3
265,907 + MPMX19_00264 0.50 -0.4
265,907 + MPMX19_00264 0.50 -1.7
265,907 + MPMX19_00264 0.50 -2.1
265,907 + MPMX19_00264 0.50 +0.5
265,907 + MPMX19_00264 0.50 -0.4
265,907 + MPMX19_00264 0.50 -1.2
265,907 + MPMX19_00264 0.50 -1.9
265,907 + MPMX19_00264 0.50 -1.4
265,907 + MPMX19_00264 0.50 -0.3
265,907 + MPMX19_00264 0.50 -0.3
265,907 + MPMX19_00264 0.50 -0.6
265,907 + MPMX19_00264 0.50 -0.4
265,907 + MPMX19_00264 0.50 -1.5
265,907 + MPMX19_00264 0.50 -0.4
265,907 + MPMX19_00264 0.50 +1.3
265,907 + MPMX19_00264 0.50 +0.4
265,907 + MPMX19_00264 0.50 -2.8
265,907 + MPMX19_00264 0.50 -0.4
265,907 + MPMX19_00264 0.50 -0.5
265,908 - MPMX19_00264 0.50 +0.9
265,908 - MPMX19_00264 0.50 -1.3
265,908 - MPMX19_00264 0.50 -0.9
265,908 - MPMX19_00264 0.50 -1.0
265,908 - MPMX19_00264 0.50 +0.4
265,908 - MPMX19_00264 0.50 +2.1
265,908 - MPMX19_00264 0.50 -0.9
265,908 - MPMX19_00264 0.50 -0.2
265,908 - MPMX19_00264 0.50 +0.7
265,908 - MPMX19_00264 0.50 +0.8
265,908 - MPMX19_00264 0.50 -0.6
265,908 - MPMX19_00264 0.50 -1.7
265,908 - MPMX19_00264 0.50 -0.9
265,908 - MPMX19_00264 0.50 -0.9
265,908 - MPMX19_00264 0.50 -0.2
265,908 - MPMX19_00264 0.50 -1.4
265,908 - MPMX19_00264 0.50 +0.8
265,908 - MPMX19_00264 0.50 -0.4
265,908 - MPMX19_00264 0.50 +1.5
265,908 - MPMX19_00264 0.50 +0.2
265,910 + MPMX19_00264 0.50 -1.8
265,910 + MPMX19_00264 0.50 -0.9
265,910 + MPMX19_00264 0.50 -0.9
265,910 + MPMX19_00264 0.50 -0.6
265,910 + MPMX19_00264 0.50 +0.3
265,910 + MPMX19_00264 0.50 -0.0
265,910 + MPMX19_00264 0.50 -0.1
265,910 + MPMX19_00264 0.50 -0.4
265,910 + MPMX19_00264 0.50 -0.4
265,910 + MPMX19_00264 0.50 -0.2
265,910 + MPMX19_00264 0.50 -0.9
265,910 + MPMX19_00264 0.50 +0.1
265,910 + MPMX19_00264 0.50 +0.1
265,910 + MPMX19_00264 0.50 -0.2
265,910 + MPMX19_00264 0.50 -0.7
265,910 + MPMX19_00264 0.50 -0.2
265,910 + MPMX19_00264 0.50 -0.2
265,910 + MPMX19_00264 0.50 -0.5
265,910 + MPMX19_00264 0.50 -1.3
265,910 + MPMX19_00264 0.50 +0.4
265,910 + MPMX19_00264 0.50 -0.8
265,910 + MPMX19_00264 0.50 -0.2
265,910 + MPMX19_00264 0.50 -1.2
265,910 + MPMX19_00264 0.50 +0.1
265,910 + MPMX19_00264 0.50 -0.7
265,910 + MPMX19_00264 0.50 -0.3
265,910 + MPMX19_00264 0.50 -0.9
265,910 + MPMX19_00264 0.50 +1.0
265,910 + MPMX19_00264 0.50 -0.8
265,910 + MPMX19_00264 0.50 -1.3
265,910 + MPMX19_00264 0.50 +0.3
265,910 + MPMX19_00264 0.50 -0.7
265,910 + MPMX19_00264 0.50 -2.0
265,910 + MPMX19_00264 0.50 -0.0
265,910 + MPMX19_00264 0.50 +0.9
265,910 + MPMX19_00264 0.50 -0.4
265,910 + MPMX19_00264 0.50 +1.9
265,910 + MPMX19_00264 0.50 +0.6
265,910 + MPMX19_00264 0.50 -0.4
265,910 + MPMX19_00264 0.50 +1.3
265,910 + MPMX19_00264 0.50 -0.7
265,910 + MPMX19_00264 0.50 -1.7
265,910 + MPMX19_00264 0.50 +0.7
265,910 + MPMX19_00264 0.50 -0.5
265,910 + MPMX19_00264 0.50 -2.8
265,910 + MPMX19_00264 0.50 -0.7
265,910 + MPMX19_00264 0.50 -1.6
265,910 + MPMX19_00264 0.50 -1.9
265,910 + MPMX19_00264 0.50 +0.6
265,910 + MPMX19_00264 0.50 -0.4
265,910 + MPMX19_00264 0.50 -1.3
265,910 + MPMX19_00264 0.50 -0.9
265,910 + MPMX19_00264 0.50 -0.9
265,910 + MPMX19_00264 0.50 -1.6
265,911 - MPMX19_00264 0.51 -0.7
265,911 - MPMX19_00264 0.51 -0.5
265,911 - MPMX19_00264 0.51 -1.0
265,911 - MPMX19_00264 0.51 -0.1
265,911 - MPMX19_00264 0.51 -0.5
265,911 - MPMX19_00264 0.51 -0.2
265,911 - MPMX19_00264 0.51 -0.2
265,911 - MPMX19_00264 0.51 +1.7
265,911 - MPMX19_00264 0.51 -0.7
265,911 - MPMX19_00264 0.51 -1.0
265,911 - MPMX19_00264 0.51 -2.5
265,911 - MPMX19_00264 0.51 -1.0
265,911 - MPMX19_00264 0.51 +0.4
265,911 - MPMX19_00264 0.51 -0.7
265,911 - MPMX19_00264 0.51 -1.3
265,911 - MPMX19_00264 0.51 -0.9
265,911 - MPMX19_00264 0.51 -0.1
265,911 - MPMX19_00264 0.51 -1.6
265,911 - MPMX19_00264 0.51 -1.2
265,911 - MPMX19_00264 0.51 -1.4
265,911 - MPMX19_00264 0.51 -0.4
265,911 - MPMX19_00264 0.51 -0.7
265,911 - MPMX19_00264 0.51 +0.6
265,911 - MPMX19_00264 0.51 -0.4
265,911 - MPMX19_00264 0.51 -0.3
265,911 - MPMX19_00264 0.51 -0.6
265,911 - MPMX19_00264 0.51 -0.2
265,911 - MPMX19_00264 0.51 +0.8
265,911 - MPMX19_00264 0.51 +0.8
265,911 - MPMX19_00264 0.51 +0.8
265,911 - MPMX19_00264 0.51 -1.2
265,911 - MPMX19_00264 0.51 -1.2
265,911 - MPMX19_00264 0.51 -1.4
265,911 - MPMX19_00264 0.51 -0.6
265,911 - MPMX19_00264 0.51 -1.9
265,911 - MPMX19_00264 0.51 +0.6
265,911 - MPMX19_00264 0.51 -0.0
265,911 - MPMX19_00264 0.51 +0.4
265,911 - MPMX19_00264 0.51 -1.1
265,911 - MPMX19_00264 0.51 -0.9
265,911 - MPMX19_00264 0.51 +0.0
265,911 - MPMX19_00264 0.51 -1.0
265,911 - MPMX19_00264 0.51 -1.7
265,911 - MPMX19_00264 0.51 -0.0
265,911 - MPMX19_00264 0.51 -0.6
265,911 - MPMX19_00264 0.51 -1.8
265,911 - MPMX19_00264 0.51 +0.1
265,911 - MPMX19_00264 0.51 +0.7
265,911 - MPMX19_00264 0.51 -1.7
265,911 - MPMX19_00264 0.51 +0.3
265,911 - MPMX19_00264 0.51 -0.5
265,911 - MPMX19_00264 0.51 -1.1
265,911 - MPMX19_00264 0.51 +0.8

Or see this region's nucleotide sequence