Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00256

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00255 and MPMX19_00256 are separated by 239 nucleotidesMPMX19_00256 and MPMX19_00257 are separated by 118 nucleotidesMPMX19_00257 and MPMX19_00258 are separated by 121 nucleotides MPMX19_00255: MPMX19_00255 - hypothetical protein, at 256,039 to 257,199 _00255 MPMX19_00256: MPMX19_00256 - hypothetical protein, at 257,439 to 257,933 _00256 MPMX19_00257: MPMX19_00257 - hypothetical protein, at 258,052 to 258,627 _00257 MPMX19_00258: MPMX19_00258 - Protein ImuB, at 258,749 to 260,293 _00258 Position (kb) 257 258Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 256.463 kb on + strand, within MPMX19_00255at 256.463 kb on + strand, within MPMX19_00255at 256.463 kb on + strand, within MPMX19_00255at 256.463 kb on + strand, within MPMX19_00255at 256.463 kb on + strand, within MPMX19_00255at 256.463 kb on + strand, within MPMX19_00255at 256.463 kb on + strand, within MPMX19_00255at 256.463 kb on + strand, within MPMX19_00255at 256.463 kb on + strand, within MPMX19_00255at 256.463 kb on + strand, within MPMX19_00255at 256.463 kb on + strand, within MPMX19_00255at 256.464 kb on - strand, within MPMX19_00255at 256.464 kb on - strand, within MPMX19_00255at 256.464 kb on - strand, within MPMX19_00255at 256.464 kb on - strand, within MPMX19_00255at 256.464 kb on - strand, within MPMX19_00255at 256.464 kb on - strand, within MPMX19_00255at 256.464 kb on - strand, within MPMX19_00255at 256.464 kb on - strand, within MPMX19_00255at 256.637 kb on + strand, within MPMX19_00255at 256.637 kb on + strand, within MPMX19_00255at 256.637 kb on + strand, within MPMX19_00255at 256.638 kb on - strand, within MPMX19_00255at 256.638 kb on - strand, within MPMX19_00255at 256.638 kb on - strand, within MPMX19_00255at 256.638 kb on - strand, within MPMX19_00255at 256.638 kb on - strand, within MPMX19_00255at 256.638 kb on - strand, within MPMX19_00255at 256.638 kb on - strand, within MPMX19_00255at 256.638 kb on - strand, within MPMX19_00255at 256.638 kb on - strand, within MPMX19_00255at 256.638 kb on - strand, within MPMX19_00255at 256.671 kb on - strand, within MPMX19_00255at 256.671 kb on - strand, within MPMX19_00255at 256.671 kb on - strand, within MPMX19_00255at 256.671 kb on - strand, within MPMX19_00255at 256.805 kb on + strand, within MPMX19_00255at 256.805 kb on + strand, within MPMX19_00255at 256.805 kb on + strand, within MPMX19_00255at 256.805 kb on + strand, within MPMX19_00255at 256.806 kb on - strand, within MPMX19_00255at 256.806 kb on - strand, within MPMX19_00255at 256.806 kb on - strand, within MPMX19_00255at 256.806 kb on - strand, within MPMX19_00255at 256.806 kb on - strand, within MPMX19_00255at 256.806 kb on - strand, within MPMX19_00255at 256.806 kb on - strand, within MPMX19_00255at 256.806 kb on - strand, within MPMX19_00255at 256.806 kb on - strand, within MPMX19_00255at 256.871 kb on + strand, within MPMX19_00255at 256.871 kb on + strand, within MPMX19_00255at 256.871 kb on + strand, within MPMX19_00255at 256.871 kb on + strand, within MPMX19_00255at 256.871 kb on + strand, within MPMX19_00255at 256.871 kb on + strand, within MPMX19_00255at 256.871 kb on + strand, within MPMX19_00255at 256.872 kb on - strand, within MPMX19_00255at 256.872 kb on - strand, within MPMX19_00255at 256.872 kb on - strand, within MPMX19_00255at 256.872 kb on - strand, within MPMX19_00255at 256.872 kb on - strand, within MPMX19_00255at 256.872 kb on - strand, within MPMX19_00255at 256.880 kb on + strand, within MPMX19_00255at 256.880 kb on + strand, within MPMX19_00255at 256.880 kb on + strand, within MPMX19_00255at 256.880 kb on + strand, within MPMX19_00255at 256.881 kb on - strand, within MPMX19_00255at 256.881 kb on - strand, within MPMX19_00255at 257.072 kb on + strand, within MPMX19_00255at 257.072 kb on + strand, within MPMX19_00255at 257.072 kb on + strand, within MPMX19_00255at 257.072 kb on + strand, within MPMX19_00255at 257.072 kb on + strand, within MPMX19_00255at 257.072 kb on + strand, within MPMX19_00255at 257.072 kb on + strand, within MPMX19_00255at 257.072 kb on + strand, within MPMX19_00255at 257.072 kb on + strand, within MPMX19_00255at 257.072 kb on + strand, within MPMX19_00255at 257.072 kb on + strand, within MPMX19_00255at 257.072 kb on + strand, within MPMX19_00255at 257.072 kb on + strand, within MPMX19_00255at 257.072 kb on + strand, within MPMX19_00255at 257.072 kb on + strand, within MPMX19_00255at 257.073 kb on - strand, within MPMX19_00255at 257.073 kb on - strand, within MPMX19_00255at 257.073 kb on - strand, within MPMX19_00255at 257.073 kb on - strand, within MPMX19_00255at 257.073 kb on - strand, within MPMX19_00255at 257.073 kb on - strand, within MPMX19_00255at 257.073 kb on - strand, within MPMX19_00255at 257.073 kb on - strand, within MPMX19_00255at 257.073 kb on - strand, within MPMX19_00255at 257.073 kb on - strand, within MPMX19_00255at 257.073 kb on - strand, within MPMX19_00255at 257.073 kb on - strand, within MPMX19_00255at 257.073 kb on - strand, within MPMX19_00255at 257.073 kb on - strand, within MPMX19_00255at 257.073 kb on - strand, within MPMX19_00255at 257.073 kb on - strand, within MPMX19_00255at 257.073 kb on - strand, within MPMX19_00255at 257.073 kb on - strand, within MPMX19_00255at 257.108 kb on + strandat 257.108 kb on + strandat 257.108 kb on + strandat 257.109 kb on - strandat 257.109 kb on - strandat 257.109 kb on - strandat 257.478 kb on + strandat 257.478 kb on + strandat 257.478 kb on + strandat 257.479 kb on - strandat 257.479 kb on - strandat 257.593 kb on + strand, within MPMX19_00256at 257.594 kb on - strand, within MPMX19_00256at 257.737 kb on + strand, within MPMX19_00256at 257.737 kb on + strand, within MPMX19_00256at 257.737 kb on + strand, within MPMX19_00256at 257.737 kb on + strand, within MPMX19_00256at 257.737 kb on + strand, within MPMX19_00256at 257.737 kb on + strand, within MPMX19_00256at 257.738 kb on - strand, within MPMX19_00256at 257.738 kb on - strand, within MPMX19_00256at 257.738 kb on - strand, within MPMX19_00256at 257.738 kb on - strand, within MPMX19_00256at 257.738 kb on - strand, within MPMX19_00256at 257.748 kb on + strand, within MPMX19_00256at 257.748 kb on + strand, within MPMX19_00256at 257.749 kb on - strand, within MPMX19_00256at 257.749 kb on - strand, within MPMX19_00256at 257.749 kb on - strand, within MPMX19_00256at 257.749 kb on - strand, within MPMX19_00256at 257.749 kb on - strand, within MPMX19_00256at 257.749 kb on - strand, within MPMX19_00256at 257.973 kb on - strandat 258.017 kb on + strandat 258.017 kb on + strandat 258.018 kb on - strandat 258.018 kb on - strandat 258.018 kb on - strandat 258.482 kb on + strand, within MPMX19_00257at 258.482 kb on + strand, within MPMX19_00257at 258.482 kb on + strand, within MPMX19_00257at 258.482 kb on + strand, within MPMX19_00257at 258.482 kb on + strand, within MPMX19_00257at 258.482 kb on + strand, within MPMX19_00257at 258.483 kb on - strand, within MPMX19_00257at 258.483 kb on - strand, within MPMX19_00257at 258.483 kb on - strand, within MPMX19_00257at 258.483 kb on - strand, within MPMX19_00257at 258.483 kb on - strand, within MPMX19_00257at 258.483 kb on - strand, within MPMX19_00257at 258.483 kb on - strand, within MPMX19_00257at 258.483 kb on - strand, within MPMX19_00257at 258.483 kb on - strand, within MPMX19_00257at 258.483 kb on - strand, within MPMX19_00257at 258.629 kb on + strandat 258.629 kb on + strandat 258.629 kb on + strandat 258.629 kb on + strandat 258.629 kb on + strandat 258.629 kb on + strandat 258.629 kb on + strandat 258.629 kb on + strandat 258.629 kb on + strandat 258.629 kb on + strandat 258.629 kb on + strandat 258.629 kb on + strandat 258.629 kb on + strandat 258.629 kb on + strandat 258.629 kb on + strandat 258.630 kb on - strandat 258.630 kb on - strandat 258.630 kb on - strandat 258.630 kb on - strandat 258.630 kb on - strandat 258.630 kb on - strandat 258.630 kb on - strandat 258.630 kb on - strandat 258.630 kb on - strandat 258.630 kb on - strandat 258.707 kb on - strandat 258.729 kb on - strandat 258.895 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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256,463 + MPMX19_00255 0.37 -2.2
256,463 + MPMX19_00255 0.37 +0.6
256,463 + MPMX19_00255 0.37 -0.4
256,463 + MPMX19_00255 0.37 +0.6
256,463 + MPMX19_00255 0.37 +0.3
256,463 + MPMX19_00255 0.37 -0.1
256,463 + MPMX19_00255 0.37 -1.4
256,463 + MPMX19_00255 0.37 -1.7
256,463 + MPMX19_00255 0.37 -0.5
256,463 + MPMX19_00255 0.37 -1.8
256,463 + MPMX19_00255 0.37 -0.2
256,464 - MPMX19_00255 0.37 +0.4
256,464 - MPMX19_00255 0.37 +0.4
256,464 - MPMX19_00255 0.37 -0.5
256,464 - MPMX19_00255 0.37 +0.6
256,464 - MPMX19_00255 0.37 -0.4
256,464 - MPMX19_00255 0.37 -1.1
256,464 - MPMX19_00255 0.37 -0.5
256,464 - MPMX19_00255 0.37 +0.8
256,637 + MPMX19_00255 0.52 -0.4
256,637 + MPMX19_00255 0.52 -0.5
256,637 + MPMX19_00255 0.52 -1.9
256,638 - MPMX19_00255 0.52 -0.7
256,638 - MPMX19_00255 0.52 +0.1
256,638 - MPMX19_00255 0.52 +0.3
256,638 - MPMX19_00255 0.52 +1.0
256,638 - MPMX19_00255 0.52 -1.9
256,638 - MPMX19_00255 0.52 -1.4
256,638 - MPMX19_00255 0.52 +0.4
256,638 - MPMX19_00255 0.52 +0.6
256,638 - MPMX19_00255 0.52 -0.4
256,638 - MPMX19_00255 0.52 +0.7
256,671 - MPMX19_00255 0.54 -0.0
256,671 - MPMX19_00255 0.54 -0.7
256,671 - MPMX19_00255 0.54 +0.2
256,671 - MPMX19_00255 0.54 -1.1
256,805 + MPMX19_00255 0.66 +0.5
256,805 + MPMX19_00255 0.66 -1.8
256,805 + MPMX19_00255 0.66 +0.3
256,805 + MPMX19_00255 0.66 +0.0
256,806 - MPMX19_00255 0.66 +0.4
256,806 - MPMX19_00255 0.66 +0.2
256,806 - MPMX19_00255 0.66 +0.2
256,806 - MPMX19_00255 0.66 -0.0
256,806 - MPMX19_00255 0.66 +0.2
256,806 - MPMX19_00255 0.66 -0.6
256,806 - MPMX19_00255 0.66 +1.0
256,806 - MPMX19_00255 0.66 +0.6
256,806 - MPMX19_00255 0.66 -1.3
256,871 + MPMX19_00255 0.72 -0.2
256,871 + MPMX19_00255 0.72 -0.6
256,871 + MPMX19_00255 0.72 -1.0
256,871 + MPMX19_00255 0.72 -0.3
256,871 + MPMX19_00255 0.72 -0.8
256,871 + MPMX19_00255 0.72 +0.0
256,871 + MPMX19_00255 0.72 -0.2
256,872 - MPMX19_00255 0.72 -1.0
256,872 - MPMX19_00255 0.72 -0.2
256,872 - MPMX19_00255 0.72 -1.5
256,872 - MPMX19_00255 0.72 -1.2
256,872 - MPMX19_00255 0.72 -2.9
256,872 - MPMX19_00255 0.72 -0.0
256,880 + MPMX19_00255 0.72 -1.0
256,880 + MPMX19_00255 0.72 +0.7
256,880 + MPMX19_00255 0.72 +0.6
256,880 + MPMX19_00255 0.72 -1.2
256,881 - MPMX19_00255 0.73 +0.2
256,881 - MPMX19_00255 0.73 -1.9
257,072 + MPMX19_00255 0.89 -1.3
257,072 + MPMX19_00255 0.89 -1.9
257,072 + MPMX19_00255 0.89 -0.9
257,072 + MPMX19_00255 0.89 +0.2
257,072 + MPMX19_00255 0.89 -1.3
257,072 + MPMX19_00255 0.89 -1.2
257,072 + MPMX19_00255 0.89 -0.5
257,072 + MPMX19_00255 0.89 -0.9
257,072 + MPMX19_00255 0.89 -0.0
257,072 + MPMX19_00255 0.89 +1.9
257,072 + MPMX19_00255 0.89 -0.1
257,072 + MPMX19_00255 0.89 -2.0
257,072 + MPMX19_00255 0.89 -1.2
257,072 + MPMX19_00255 0.89 -0.1
257,072 + MPMX19_00255 0.89 -0.4
257,073 - MPMX19_00255 0.89 -1.2
257,073 - MPMX19_00255 0.89 -1.4
257,073 - MPMX19_00255 0.89 -0.7
257,073 - MPMX19_00255 0.89 -0.7
257,073 - MPMX19_00255 0.89 -1.2
257,073 - MPMX19_00255 0.89 +0.5
257,073 - MPMX19_00255 0.89 +0.9
257,073 - MPMX19_00255 0.89 -1.0
257,073 - MPMX19_00255 0.89 +1.3
257,073 - MPMX19_00255 0.89 +0.0
257,073 - MPMX19_00255 0.89 +0.9
257,073 - MPMX19_00255 0.89 -1.4
257,073 - MPMX19_00255 0.89 -0.8
257,073 - MPMX19_00255 0.89 +1.2
257,073 - MPMX19_00255 0.89 -0.1
257,073 - MPMX19_00255 0.89 -0.9
257,073 - MPMX19_00255 0.89 -0.4
257,073 - MPMX19_00255 0.89 -0.7
257,108 + -0.2
257,108 + -0.4
257,108 + -1.0
257,109 - -1.5
257,109 - +0.6
257,109 - -0.8
257,478 + -0.4
257,478 + -1.0
257,478 + -1.3
257,479 - +0.2
257,479 - +0.2
257,593 + MPMX19_00256 0.31 +0.9
257,594 - MPMX19_00256 0.31 +1.7
257,737 + MPMX19_00256 0.60 +0.9
257,737 + MPMX19_00256 0.60 -0.7
257,737 + MPMX19_00256 0.60 +0.2
257,737 + MPMX19_00256 0.60 -0.8
257,737 + MPMX19_00256 0.60 +0.0
257,737 + MPMX19_00256 0.60 -0.8
257,738 - MPMX19_00256 0.60 -0.3
257,738 - MPMX19_00256 0.60 -1.6
257,738 - MPMX19_00256 0.60 +0.0
257,738 - MPMX19_00256 0.60 -1.8
257,738 - MPMX19_00256 0.60 -0.4
257,748 + MPMX19_00256 0.62 -0.7
257,748 + MPMX19_00256 0.62 +0.7
257,749 - MPMX19_00256 0.63 +1.4
257,749 - MPMX19_00256 0.63 -0.8
257,749 - MPMX19_00256 0.63 +0.9
257,749 - MPMX19_00256 0.63 +0.2
257,749 - MPMX19_00256 0.63 +0.7
257,749 - MPMX19_00256 0.63 -1.1
257,973 - -0.4
258,017 + +0.2
258,017 + +0.2
258,018 - -0.4
258,018 - -0.0
258,018 - -0.2
258,482 + MPMX19_00257 0.75 +0.6
258,482 + MPMX19_00257 0.75 -0.4
258,482 + MPMX19_00257 0.75 +0.1
258,482 + MPMX19_00257 0.75 -0.3
258,482 + MPMX19_00257 0.75 -0.5
258,482 + MPMX19_00257 0.75 +1.2
258,483 - MPMX19_00257 0.75 -0.8
258,483 - MPMX19_00257 0.75 -0.1
258,483 - MPMX19_00257 0.75 -0.2
258,483 - MPMX19_00257 0.75 -0.6
258,483 - MPMX19_00257 0.75 -0.8
258,483 - MPMX19_00257 0.75 -0.6
258,483 - MPMX19_00257 0.75 -2.0
258,483 - MPMX19_00257 0.75 -0.6
258,483 - MPMX19_00257 0.75 -0.2
258,483 - MPMX19_00257 0.75 -0.8
258,629 + -0.5
258,629 + -1.0
258,629 + +0.3
258,629 + -0.9
258,629 + -0.0
258,629 + +0.2
258,629 + +0.2
258,629 + +0.4
258,629 + +0.8
258,629 + -0.2
258,629 + -0.1
258,629 + +1.2
258,629 + -0.3
258,629 + -0.3
258,629 + +1.2
258,630 - +0.2
258,630 - -1.2
258,630 - -0.0
258,630 - -0.6
258,630 - -1.3
258,630 - +0.6
258,630 - -1.3
258,630 - -0.1
258,630 - -0.6
258,630 - -1.3
258,707 - -0.8
258,729 - -0.3
258,895 - +0.6

Or see this region's nucleotide sequence