Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00242 and MPMX19_00243 overlap by 4 nucleotides MPMX19_00243 and MPMX19_00244 overlap by 4 nucleotides MPMX19_00244 and MPMX19_00245 are separated by 76 nucleotides MPMX19_00245 and MPMX19_00246 are separated by 99 nucleotides
MPMX19_00242: MPMX19_00242 - hypothetical protein, at 244,053 to 244,505
_00242
MPMX19_00243: MPMX19_00243 - ECF RNA polymerase sigma factor SigJ, at 244,502 to 245,407
_00243
MPMX19_00244: MPMX19_00244 - hypothetical protein, at 245,404 to 245,778
_00244
MPMX19_00245: MPMX19_00245 - hypothetical protein, at 245,855 to 246,589
_00245
MPMX19_00246: MPMX19_00246 - hypothetical protein, at 246,689 to 247,054
_00246
Position (kb) 245
246 Strain fitness (log2 ratio) -2
-1
0
1
2 at 244.472 kb on + strand at 244.472 kb on + strand at 244.472 kb on + strand at 244.472 kb on + strand at 244.472 kb on + strand at 244.472 kb on + strand at 244.472 kb on + strand at 244.473 kb on - strand at 244.473 kb on - strand at 244.679 kb on + strand, within MPMX19_00243 at 244.679 kb on + strand, within MPMX19_00243 at 244.679 kb on + strand, within MPMX19_00243 at 244.680 kb on - strand, within MPMX19_00243 at 244.680 kb on - strand, within MPMX19_00243 at 244.680 kb on - strand, within MPMX19_00243 at 244.680 kb on - strand, within MPMX19_00243 at 244.680 kb on - strand, within MPMX19_00243 at 244.748 kb on + strand, within MPMX19_00243 at 244.748 kb on + strand, within MPMX19_00243 at 244.748 kb on + strand, within MPMX19_00243 at 244.748 kb on + strand, within MPMX19_00243 at 244.748 kb on + strand, within MPMX19_00243 at 244.748 kb on + strand, within MPMX19_00243 at 244.748 kb on + strand, within MPMX19_00243 at 244.748 kb on + strand, within MPMX19_00243 at 244.748 kb on + strand, within MPMX19_00243 at 244.748 kb on + strand, within MPMX19_00243 at 244.749 kb on - strand, within MPMX19_00243 at 244.749 kb on - strand, within MPMX19_00243 at 244.749 kb on - strand, within MPMX19_00243 at 244.749 kb on - strand, within MPMX19_00243 at 244.749 kb on - strand, within MPMX19_00243 at 244.749 kb on - strand, within MPMX19_00243 at 244.749 kb on - strand, within MPMX19_00243 at 244.751 kb on + strand, within MPMX19_00243 at 244.751 kb on + strand, within MPMX19_00243 at 244.751 kb on + strand, within MPMX19_00243 at 244.752 kb on - strand, within MPMX19_00243 at 244.752 kb on - strand, within MPMX19_00243 at 244.913 kb on + strand, within MPMX19_00243 at 244.914 kb on - strand, within MPMX19_00243 at 244.914 kb on - strand, within MPMX19_00243 at 244.914 kb on - strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.360 kb on + strand at 245.360 kb on + strand at 245.360 kb on + strand at 245.360 kb on + strand at 245.360 kb on + strand at 245.360 kb on + strand at 245.360 kb on + strand at 245.360 kb on + strand at 245.360 kb on + strand at 245.361 kb on - strand at 245.361 kb on - strand at 245.361 kb on - strand at 245.361 kb on - strand at 245.361 kb on - strand at 245.361 kb on - strand at 245.361 kb on - strand at 245.405 kb on + strand at 245.405 kb on + strand at 245.406 kb on - strand at 245.406 kb on - strand at 245.406 kb on - strand at 245.406 kb on - strand at 245.522 kb on + strand, within MPMX19_00244 at 245.522 kb on + strand, within MPMX19_00244 at 245.522 kb on + strand, within MPMX19_00244 at 245.523 kb on - strand, within MPMX19_00244 at 245.523 kb on - strand, within MPMX19_00244 at 245.738 kb on + strand, within MPMX19_00244 at 245.738 kb on + strand, within MPMX19_00244 at 245.738 kb on + strand, within MPMX19_00244 at 245.739 kb on - strand, within MPMX19_00244 at 245.739 kb on - strand, within MPMX19_00244 at 245.739 kb on - strand, within MPMX19_00244 at 245.739 kb on - strand, within MPMX19_00244 at 245.739 kb on - strand, within MPMX19_00244 at 245.808 kb on - strand at 245.822 kb on + strand at 245.822 kb on + strand at 245.822 kb on + strand at 245.822 kb on + strand at 245.822 kb on + strand at 245.822 kb on + strand at 245.822 kb on + strand at 245.823 kb on - strand at 245.823 kb on - strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.846 kb on - strand at 245.846 kb on - strand at 245.846 kb on - strand at 245.846 kb on - strand at 245.846 kb on - strand at 245.846 kb on - strand at 245.846 kb on - strand at 245.846 kb on - strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.881 kb on + strand at 245.882 kb on - strand at 245.882 kb on - strand at 246.599 kb on + strand at 246.600 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 244,472 + -0.0 244,472 + -0.5 244,472 + -1.2 244,472 + +0.6 244,472 + +0.6 244,472 + +0.2 244,472 + -0.0 244,473 - -0.3 244,473 - -1.4 244,679 + MPMX19_00243 0.20 +0.6 244,679 + MPMX19_00243 0.20 -0.8 244,679 + MPMX19_00243 0.20 -0.1 244,680 - MPMX19_00243 0.20 -0.0 244,680 - MPMX19_00243 0.20 -1.0 244,680 - MPMX19_00243 0.20 -1.4 244,680 - MPMX19_00243 0.20 -0.2 244,680 - MPMX19_00243 0.20 -1.7 244,748 + MPMX19_00243 0.27 +0.3 244,748 + MPMX19_00243 0.27 -1.2 244,748 + MPMX19_00243 0.27 -1.7 244,748 + MPMX19_00243 0.27 +1.2 244,748 + MPMX19_00243 0.27 -0.2 244,748 + MPMX19_00243 0.27 +0.1 244,748 + MPMX19_00243 0.27 +0.2 244,748 + MPMX19_00243 0.27 +0.6 244,748 + MPMX19_00243 0.27 +0.8 244,748 + MPMX19_00243 0.27 -0.8 244,749 - MPMX19_00243 0.27 -1.2 244,749 - MPMX19_00243 0.27 -0.1 244,749 - MPMX19_00243 0.27 +0.6 244,749 - MPMX19_00243 0.27 -2.2 244,749 - MPMX19_00243 0.27 -1.8 244,749 - MPMX19_00243 0.27 +0.2 244,749 - MPMX19_00243 0.27 -1.3 244,751 + MPMX19_00243 0.27 +0.9 244,751 + MPMX19_00243 0.27 -0.8 244,751 + MPMX19_00243 0.27 -0.6 244,752 - MPMX19_00243 0.28 -0.2 244,752 - MPMX19_00243 0.28 +0.7 244,913 + MPMX19_00243 0.45 -0.5 244,914 - MPMX19_00243 0.45 +0.4 244,914 - MPMX19_00243 0.45 +0.2 244,914 - MPMX19_00243 0.45 -1.5 245,084 + MPMX19_00243 0.64 +0.7 245,084 + MPMX19_00243 0.64 +0.2 245,084 + MPMX19_00243 0.64 -0.8 245,084 + MPMX19_00243 0.64 -0.8 245,084 + MPMX19_00243 0.64 -1.3 245,084 + MPMX19_00243 0.64 -0.7 245,084 + MPMX19_00243 0.64 -0.8 245,084 + MPMX19_00243 0.64 +0.3 245,085 - MPMX19_00243 0.64 -0.5 245,085 - MPMX19_00243 0.64 +0.0 245,085 - MPMX19_00243 0.64 -1.1 245,085 - MPMX19_00243 0.64 -1.0 245,085 - MPMX19_00243 0.64 -0.8 245,085 - MPMX19_00243 0.64 -0.3 245,085 - MPMX19_00243 0.64 -0.7 245,085 - MPMX19_00243 0.64 -0.1 245,085 - MPMX19_00243 0.64 +0.5 245,360 + -0.7 245,360 + +0.6 245,360 + +0.6 245,360 + -0.2 245,360 + -1.1 245,360 + -0.8 245,360 + -1.2 245,360 + -0.7 245,360 + +0.5 245,361 - -1.8 245,361 - -0.7 245,361 - -2.0 245,361 - -0.7 245,361 - +0.6 245,361 - -0.8 245,361 - -0.7 245,405 + -0.4 245,405 + +1.0 245,406 - -0.8 245,406 - +0.2 245,406 - -1.8 245,406 - +0.2 245,522 + MPMX19_00244 0.31 +0.7 245,522 + MPMX19_00244 0.31 -0.7 245,522 + MPMX19_00244 0.31 -0.8 245,523 - MPMX19_00244 0.32 -0.1 245,523 - MPMX19_00244 0.32 -1.8 245,738 + MPMX19_00244 0.89 -0.4 245,738 + MPMX19_00244 0.89 -0.5 245,738 + MPMX19_00244 0.89 +2.3 245,739 - MPMX19_00244 0.89 -0.2 245,739 - MPMX19_00244 0.89 -0.5 245,739 - MPMX19_00244 0.89 -0.5 245,739 - MPMX19_00244 0.89 +0.2 245,739 - MPMX19_00244 0.89 +0.5 245,808 - +0.2 245,822 + +0.4 245,822 + -1.7 245,822 + -0.7 245,822 + -2.0 245,822 + +0.8 245,822 + -0.8 245,822 + -0.8 245,823 - -0.3 245,823 - -1.0 245,845 + -0.4 245,845 + +0.3 245,845 + +0.4 245,845 + +2.2 245,845 + +0.3 245,845 + +0.3 245,845 + -0.2 245,845 + -0.3 245,845 + -0.8 245,845 + -2.4 245,846 - +0.0 245,846 - +0.0 245,846 - -0.4 245,846 - -0.2 245,846 - +0.2 245,846 - -1.2 245,846 - +0.2 245,846 - -1.1 245,856 + -1.1 245,856 + +0.2 245,856 + -2.2 245,856 + -0.0 245,856 + -1.8 245,856 + -0.2 245,856 + -2.2 245,856 + -2.2 245,856 + +0.3 245,856 + +0.9 245,857 - -1.8 245,857 - -0.8 245,857 - -0.0 245,857 - +0.8 245,857 - -0.5 245,857 - -0.0 245,857 - +0.7 245,857 - +0.7 245,857 - -1.8 245,881 + -0.4 245,882 - -0.2 245,882 - -0.4 246,599 + -1.3 246,600 - -0.4
Or see this region's nucleotide sequence