Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00241

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00239 and MPMX19_00240 are separated by 33 nucleotidesMPMX19_00240 and MPMX19_00241 are separated by 16 nucleotidesMPMX19_00241 and MPMX19_00242 are separated by 98 nucleotidesMPMX19_00242 and MPMX19_00243 overlap by 4 nucleotides MPMX19_00239: MPMX19_00239 - putative adenylyltransferase/sulfurtransferase MoeZ, at 242,346 to 243,146 _00239 MPMX19_00240: MPMX19_00240 - hypothetical protein, at 243,180 to 243,680 _00240 MPMX19_00241: MPMX19_00241 - hypothetical protein, at 243,697 to 243,954 _00241 MPMX19_00242: MPMX19_00242 - hypothetical protein, at 244,053 to 244,505 _00242 MPMX19_00243: MPMX19_00243 - ECF RNA polymerase sigma factor SigJ, at 244,502 to 245,407 _00243 Position (kb) 243 244Strain fitness (log2 ratio) -2 -1 0 1 2at 242.877 kb on + strand, within MPMX19_00239at 242.877 kb on + strand, within MPMX19_00239at 242.877 kb on + strand, within MPMX19_00239at 242.878 kb on - strand, within MPMX19_00239at 243.054 kb on + strand, within MPMX19_00239at 243.054 kb on + strand, within MPMX19_00239at 243.054 kb on + strand, within MPMX19_00239at 243.054 kb on + strand, within MPMX19_00239at 243.054 kb on + strand, within MPMX19_00239at 243.054 kb on + strand, within MPMX19_00239at 243.054 kb on + strand, within MPMX19_00239at 243.054 kb on + strand, within MPMX19_00239at 243.054 kb on + strand, within MPMX19_00239at 243.054 kb on + strand, within MPMX19_00239at 243.055 kb on - strand, within MPMX19_00239at 243.055 kb on - strand, within MPMX19_00239at 243.055 kb on - strand, within MPMX19_00239at 243.055 kb on - strand, within MPMX19_00239at 243.055 kb on - strand, within MPMX19_00239at 243.055 kb on - strand, within MPMX19_00239at 243.055 kb on - strand, within MPMX19_00239at 243.055 kb on - strand, within MPMX19_00239at 243.055 kb on - strand, within MPMX19_00239at 243.055 kb on - strand, within MPMX19_00239at 243.055 kb on - strand, within MPMX19_00239at 243.055 kb on - strand, within MPMX19_00239at 243.063 kb on + strand, within MPMX19_00239at 243.063 kb on + strand, within MPMX19_00239at 243.063 kb on + strand, within MPMX19_00239at 243.064 kb on - strand, within MPMX19_00239at 243.064 kb on - strand, within MPMX19_00239at 243.064 kb on - strand, within MPMX19_00239at 243.163 kb on + strandat 243.163 kb on + strandat 243.163 kb on + strandat 243.163 kb on + strandat 243.163 kb on + strandat 243.163 kb on + strandat 243.163 kb on + strandat 243.163 kb on + strandat 243.163 kb on + strandat 243.163 kb on + strandat 243.163 kb on + strandat 243.163 kb on + strandat 243.163 kb on + strandat 243.164 kb on - strandat 243.164 kb on - strandat 243.164 kb on - strandat 243.164 kb on - strandat 243.164 kb on - strandat 243.164 kb on - strandat 243.164 kb on - strandat 243.164 kb on - strandat 243.164 kb on - strandat 243.164 kb on - strandat 243.291 kb on + strand, within MPMX19_00240at 243.291 kb on + strand, within MPMX19_00240at 243.291 kb on + strand, within MPMX19_00240at 243.292 kb on - strand, within MPMX19_00240at 243.292 kb on - strand, within MPMX19_00240at 243.459 kb on + strand, within MPMX19_00240at 243.459 kb on + strand, within MPMX19_00240at 243.460 kb on - strand, within MPMX19_00240at 243.776 kb on - strand, within MPMX19_00241at 244.095 kb on + strandat 244.095 kb on + strandat 244.095 kb on + strandat 244.095 kb on + strandat 244.096 kb on - strandat 244.096 kb on - strandat 244.096 kb on - strandat 244.096 kb on - strandat 244.096 kb on - strandat 244.096 kb on - strandat 244.096 kb on - strandat 244.096 kb on - strandat 244.200 kb on + strand, within MPMX19_00242at 244.200 kb on + strand, within MPMX19_00242at 244.200 kb on + strand, within MPMX19_00242at 244.200 kb on + strand, within MPMX19_00242at 244.200 kb on + strand, within MPMX19_00242at 244.200 kb on + strand, within MPMX19_00242at 244.200 kb on + strand, within MPMX19_00242at 244.200 kb on + strand, within MPMX19_00242at 244.200 kb on + strand, within MPMX19_00242at 244.200 kb on + strand, within MPMX19_00242at 244.200 kb on + strand, within MPMX19_00242at 244.200 kb on + strand, within MPMX19_00242at 244.200 kb on + strand, within MPMX19_00242at 244.200 kb on + strand, within MPMX19_00242at 244.200 kb on + strand, within MPMX19_00242at 244.200 kb on + strand, within MPMX19_00242at 244.200 kb on + strand, within MPMX19_00242at 244.200 kb on + strand, within MPMX19_00242at 244.200 kb on + strand, within MPMX19_00242at 244.200 kb on + strand, within MPMX19_00242at 244.200 kb on + strand, within MPMX19_00242at 244.200 kb on + strand, within MPMX19_00242at 244.200 kb on + strand, within MPMX19_00242at 244.200 kb on + strand, within MPMX19_00242at 244.200 kb on + strand, within MPMX19_00242at 244.201 kb on - strand, within MPMX19_00242at 244.201 kb on - strand, within MPMX19_00242at 244.201 kb on - strand, within MPMX19_00242at 244.201 kb on - strand, within MPMX19_00242at 244.201 kb on - strand, within MPMX19_00242at 244.201 kb on - strand, within MPMX19_00242at 244.201 kb on - strand, within MPMX19_00242at 244.201 kb on - strand, within MPMX19_00242at 244.201 kb on - strand, within MPMX19_00242at 244.201 kb on - strand, within MPMX19_00242at 244.201 kb on - strand, within MPMX19_00242at 244.201 kb on - strand, within MPMX19_00242at 244.201 kb on - strand, within MPMX19_00242at 244.201 kb on - strand, within MPMX19_00242at 244.201 kb on - strand, within MPMX19_00242at 244.201 kb on - strand, within MPMX19_00242at 244.201 kb on - strand, within MPMX19_00242at 244.201 kb on - strand, within MPMX19_00242at 244.201 kb on - strand, within MPMX19_00242at 244.201 kb on - strand, within MPMX19_00242at 244.472 kb on + strandat 244.472 kb on + strandat 244.472 kb on + strandat 244.472 kb on + strandat 244.472 kb on + strandat 244.472 kb on + strandat 244.472 kb on + strandat 244.473 kb on - strandat 244.473 kb on - strandat 244.679 kb on + strand, within MPMX19_00243at 244.679 kb on + strand, within MPMX19_00243at 244.679 kb on + strand, within MPMX19_00243at 244.680 kb on - strand, within MPMX19_00243at 244.680 kb on - strand, within MPMX19_00243at 244.680 kb on - strand, within MPMX19_00243at 244.680 kb on - strand, within MPMX19_00243at 244.680 kb on - strand, within MPMX19_00243at 244.748 kb on + strand, within MPMX19_00243at 244.748 kb on + strand, within MPMX19_00243at 244.748 kb on + strand, within MPMX19_00243at 244.748 kb on + strand, within MPMX19_00243at 244.748 kb on + strand, within MPMX19_00243at 244.748 kb on + strand, within MPMX19_00243at 244.748 kb on + strand, within MPMX19_00243at 244.748 kb on + strand, within MPMX19_00243at 244.748 kb on + strand, within MPMX19_00243at 244.748 kb on + strand, within MPMX19_00243at 244.749 kb on - strand, within MPMX19_00243at 244.749 kb on - strand, within MPMX19_00243at 244.749 kb on - strand, within MPMX19_00243at 244.749 kb on - strand, within MPMX19_00243at 244.749 kb on - strand, within MPMX19_00243at 244.749 kb on - strand, within MPMX19_00243at 244.749 kb on - strand, within MPMX19_00243at 244.751 kb on + strand, within MPMX19_00243at 244.751 kb on + strand, within MPMX19_00243at 244.751 kb on + strand, within MPMX19_00243at 244.752 kb on - strand, within MPMX19_00243at 244.752 kb on - strand, within MPMX19_00243at 244.913 kb on + strand, within MPMX19_00243at 244.914 kb on - strand, within MPMX19_00243at 244.914 kb on - strand, within MPMX19_00243at 244.914 kb on - strand, within MPMX19_00243

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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242,877 + MPMX19_00239 0.66 +1.2
242,877 + MPMX19_00239 0.66 -0.7
242,877 + MPMX19_00239 0.66 -0.4
242,878 - MPMX19_00239 0.66 +0.4
243,054 + MPMX19_00239 0.88 -0.8
243,054 + MPMX19_00239 0.88 +0.7
243,054 + MPMX19_00239 0.88 +0.9
243,054 + MPMX19_00239 0.88 +0.7
243,054 + MPMX19_00239 0.88 -1.3
243,054 + MPMX19_00239 0.88 -0.4
243,054 + MPMX19_00239 0.88 -2.3
243,054 + MPMX19_00239 0.88 -2.0
243,054 + MPMX19_00239 0.88 -1.8
243,054 + MPMX19_00239 0.88 -1.8
243,055 - MPMX19_00239 0.89 +1.2
243,055 - MPMX19_00239 0.89 +0.2
243,055 - MPMX19_00239 0.89 -0.2
243,055 - MPMX19_00239 0.89 -0.7
243,055 - MPMX19_00239 0.89 -0.4
243,055 - MPMX19_00239 0.89 -0.4
243,055 - MPMX19_00239 0.89 -0.7
243,055 - MPMX19_00239 0.89 -1.1
243,055 - MPMX19_00239 0.89 +0.2
243,055 - MPMX19_00239 0.89 -0.2
243,055 - MPMX19_00239 0.89 -0.0
243,055 - MPMX19_00239 0.89 -1.0
243,063 + MPMX19_00239 0.90 +0.2
243,063 + MPMX19_00239 0.90 -1.0
243,063 + MPMX19_00239 0.90 +0.6
243,064 - MPMX19_00239 0.90 -0.2
243,064 - MPMX19_00239 0.90 -1.8
243,064 - MPMX19_00239 0.90 -1.3
243,163 + -1.9
243,163 + +0.2
243,163 + -1.0
243,163 + -1.7
243,163 + +0.3
243,163 + -0.8
243,163 + +0.6
243,163 + -0.2
243,163 + +0.2
243,163 + +0.8
243,163 + -0.0
243,163 + -0.1
243,163 + -1.1
243,164 - -0.2
243,164 - -1.8
243,164 - -1.8
243,164 - -0.2
243,164 - -0.1
243,164 - -0.2
243,164 - -0.4
243,164 - -0.3
243,164 - +1.2
243,164 - -1.3
243,291 + MPMX19_00240 0.22 +1.6
243,291 + MPMX19_00240 0.22 -0.3
243,291 + MPMX19_00240 0.22 -0.4
243,292 - MPMX19_00240 0.22 +0.9
243,292 - MPMX19_00240 0.22 -0.8
243,459 + MPMX19_00240 0.56 +0.8
243,459 + MPMX19_00240 0.56 -0.4
243,460 - MPMX19_00240 0.56 -2.4
243,776 - MPMX19_00241 0.31 -0.8
244,095 + -0.7
244,095 + +0.3
244,095 + +0.3
244,095 + +1.5
244,096 - -1.1
244,096 - +0.2
244,096 - -0.7
244,096 - +0.6
244,096 - -1.1
244,096 - -1.8
244,096 - +0.3
244,096 - -0.8
244,200 + MPMX19_00242 0.32 -0.5
244,200 + MPMX19_00242 0.32 -1.8
244,200 + MPMX19_00242 0.32 +0.2
244,200 + MPMX19_00242 0.32 +0.4
244,200 + MPMX19_00242 0.32 -0.3
244,200 + MPMX19_00242 0.32 -0.6
244,200 + MPMX19_00242 0.32 -0.7
244,200 + MPMX19_00242 0.32 -0.3
244,200 + MPMX19_00242 0.32 -1.8
244,200 + MPMX19_00242 0.32 -0.0
244,200 + MPMX19_00242 0.32 -0.9
244,200 + MPMX19_00242 0.32 -1.4
244,200 + MPMX19_00242 0.32 -0.4
244,200 + MPMX19_00242 0.32 +1.3
244,200 + MPMX19_00242 0.32 -1.4
244,200 + MPMX19_00242 0.32 -0.0
244,200 + MPMX19_00242 0.32 -1.2
244,200 + MPMX19_00242 0.32 -0.8
244,200 + MPMX19_00242 0.32 -1.8
244,200 + MPMX19_00242 0.32 -0.8
244,200 + MPMX19_00242 0.32 -0.5
244,200 + MPMX19_00242 0.32 -0.6
244,200 + MPMX19_00242 0.32 -1.0
244,200 + MPMX19_00242 0.32 -0.4
244,200 + MPMX19_00242 0.32 -1.3
244,201 - MPMX19_00242 0.33 -0.7
244,201 - MPMX19_00242 0.33 -0.4
244,201 - MPMX19_00242 0.33 -1.5
244,201 - MPMX19_00242 0.33 -1.2
244,201 - MPMX19_00242 0.33 -1.3
244,201 - MPMX19_00242 0.33 -2.5
244,201 - MPMX19_00242 0.33 -0.5
244,201 - MPMX19_00242 0.33 -1.5
244,201 - MPMX19_00242 0.33 -1.9
244,201 - MPMX19_00242 0.33 +2.7
244,201 - MPMX19_00242 0.33 -0.4
244,201 - MPMX19_00242 0.33 -0.3
244,201 - MPMX19_00242 0.33 -0.2
244,201 - MPMX19_00242 0.33 -0.2
244,201 - MPMX19_00242 0.33 -0.7
244,201 - MPMX19_00242 0.33 -0.8
244,201 - MPMX19_00242 0.33 -0.3
244,201 - MPMX19_00242 0.33 -1.2
244,201 - MPMX19_00242 0.33 -0.2
244,201 - MPMX19_00242 0.33 +0.3
244,472 + -0.0
244,472 + -0.5
244,472 + -1.2
244,472 + +0.6
244,472 + +0.6
244,472 + +0.2
244,472 + -0.0
244,473 - -0.3
244,473 - -1.4
244,679 + MPMX19_00243 0.20 +0.6
244,679 + MPMX19_00243 0.20 -0.8
244,679 + MPMX19_00243 0.20 -0.1
244,680 - MPMX19_00243 0.20 -0.0
244,680 - MPMX19_00243 0.20 -1.0
244,680 - MPMX19_00243 0.20 -1.4
244,680 - MPMX19_00243 0.20 -0.2
244,680 - MPMX19_00243 0.20 -1.7
244,748 + MPMX19_00243 0.27 +0.3
244,748 + MPMX19_00243 0.27 -1.2
244,748 + MPMX19_00243 0.27 -1.7
244,748 + MPMX19_00243 0.27 +1.2
244,748 + MPMX19_00243 0.27 -0.2
244,748 + MPMX19_00243 0.27 +0.1
244,748 + MPMX19_00243 0.27 +0.2
244,748 + MPMX19_00243 0.27 +0.6
244,748 + MPMX19_00243 0.27 +0.8
244,748 + MPMX19_00243 0.27 -0.8
244,749 - MPMX19_00243 0.27 -1.2
244,749 - MPMX19_00243 0.27 -0.1
244,749 - MPMX19_00243 0.27 +0.6
244,749 - MPMX19_00243 0.27 -2.2
244,749 - MPMX19_00243 0.27 -1.8
244,749 - MPMX19_00243 0.27 +0.2
244,749 - MPMX19_00243 0.27 -1.3
244,751 + MPMX19_00243 0.27 +0.9
244,751 + MPMX19_00243 0.27 -0.8
244,751 + MPMX19_00243 0.27 -0.6
244,752 - MPMX19_00243 0.28 -0.2
244,752 - MPMX19_00243 0.28 +0.7
244,913 + MPMX19_00243 0.45 -0.5
244,914 - MPMX19_00243 0.45 +0.4
244,914 - MPMX19_00243 0.45 +0.2
244,914 - MPMX19_00243 0.45 -1.5

Or see this region's nucleotide sequence