Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00181 and MPMX19_00182 are separated by 74 nucleotides MPMX19_00182 and MPMX19_00183 overlap by 1 nucleotides MPMX19_00183 and MPMX19_00184 are separated by 252 nucleotides
MPMX19_00181: MPMX19_00181 - hypothetical protein, at 191,224 to 191,490
_00181
MPMX19_00182: MPMX19_00182 - hypothetical protein, at 191,565 to 192,326
_00182
MPMX19_00183: MPMX19_00183 - hypothetical protein, at 192,326 to 192,571
_00183
MPMX19_00184: MPMX19_00184 - hypothetical protein, at 192,824 to 193,495
_00184
Position (kb) 192
193 Strain fitness (log2 ratio) -2
-1
0
1 at 191.631 kb on + strand at 191.632 kb on - strand at 191.674 kb on - strand, within MPMX19_00182 at 191.714 kb on - strand, within MPMX19_00182 at 191.714 kb on - strand, within MPMX19_00182 at 191.770 kb on + strand, within MPMX19_00182 at 191.840 kb on + strand, within MPMX19_00182 at 191.840 kb on + strand, within MPMX19_00182 at 192.600 kb on + strand at 192.600 kb on + strand at 192.600 kb on + strand at 192.600 kb on + strand at 192.600 kb on + strand at 192.600 kb on + strand at 192.601 kb on - strand at 192.601 kb on - strand at 192.601 kb on - strand at 192.601 kb on - strand at 192.601 kb on - strand at 192.676 kb on + strand at 192.723 kb on + strand at 192.724 kb on - strand at 192.724 kb on - strand at 192.786 kb on + strand at 192.787 kb on - strand at 192.804 kb on + strand at 192.881 kb on + strand at 192.990 kb on + strand, within MPMX19_00184 at 192.991 kb on - strand, within MPMX19_00184 at 193.052 kb on - strand, within MPMX19_00184 at 193.068 kb on - strand, within MPMX19_00184 at 193.084 kb on - strand, within MPMX19_00184 at 193.084 kb on - strand, within MPMX19_00184 at 193.172 kb on + strand, within MPMX19_00184 at 193.173 kb on - strand, within MPMX19_00184 at 193.176 kb on + strand, within MPMX19_00184 at 193.242 kb on + strand, within MPMX19_00184 at 193.242 kb on + strand, within MPMX19_00184 at 193.243 kb on - strand, within MPMX19_00184 at 193.243 kb on - strand, within MPMX19_00184 at 193.243 kb on - strand, within MPMX19_00184 at 193.289 kb on - strand, within MPMX19_00184 at 193.309 kb on - strand, within MPMX19_00184 at 193.361 kb on + strand, within MPMX19_00184 at 193.362 kb on - strand, within MPMX19_00184 at 193.436 kb on + strand at 193.436 kb on + strand at 193.436 kb on + strand at 193.436 kb on + strand at 193.436 kb on + strand at 193.436 kb on + strand at 193.436 kb on + strand at 193.436 kb on + strand at 193.437 kb on - strand at 193.437 kb on - strand at 193.437 kb on - strand at 193.437 kb on - strand at 193.445 kb on + strand at 193.445 kb on + strand at 193.445 kb on + strand at 193.445 kb on + strand at 193.446 kb on - strand at 193.446 kb on - strand at 193.446 kb on - strand at 193.446 kb on - strand at 193.446 kb on - strand at 193.458 kb on - strand at 193.515 kb on + strand at 193.515 kb on + strand at 193.515 kb on + strand at 193.516 kb on - strand at 193.516 kb on - strand at 193.516 kb on - strand at 193.516 kb on - strand at 193.553 kb on + strand at 193.553 kb on + strand at 193.554 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 191,631 + -0.4 191,632 - -1.3 191,674 - MPMX19_00182 0.14 -1.2 191,714 - MPMX19_00182 0.20 -1.3 191,714 - MPMX19_00182 0.20 -1.7 191,770 + MPMX19_00182 0.27 -1.1 191,840 + MPMX19_00182 0.36 -0.5 191,840 + MPMX19_00182 0.36 -1.0 192,600 + +1.6 192,600 + -0.4 192,600 + -0.7 192,600 + -0.2 192,600 + +0.2 192,600 + -1.2 192,601 - -1.5 192,601 - -0.2 192,601 - -0.7 192,601 - -1.4 192,601 - -1.1 192,676 + -1.0 192,723 + +0.6 192,724 - -0.1 192,724 - -0.1 192,786 + -0.2 192,787 - -1.9 192,804 + +0.9 192,881 + -1.2 192,990 + MPMX19_00184 0.25 +0.6 192,991 - MPMX19_00184 0.25 -0.3 193,052 - MPMX19_00184 0.34 -1.2 193,068 - MPMX19_00184 0.36 -0.5 193,084 - MPMX19_00184 0.39 -1.0 193,084 - MPMX19_00184 0.39 -0.6 193,172 + MPMX19_00184 0.52 -0.0 193,173 - MPMX19_00184 0.52 -1.8 193,176 + MPMX19_00184 0.52 -0.6 193,242 + MPMX19_00184 0.62 -0.6 193,242 + MPMX19_00184 0.62 +1.4 193,243 - MPMX19_00184 0.62 -0.3 193,243 - MPMX19_00184 0.62 -1.3 193,243 - MPMX19_00184 0.62 -0.8 193,289 - MPMX19_00184 0.69 +1.2 193,309 - MPMX19_00184 0.72 -1.1 193,361 + MPMX19_00184 0.80 -1.5 193,362 - MPMX19_00184 0.80 +0.8 193,436 + -0.6 193,436 + -0.4 193,436 + -1.6 193,436 + -1.1 193,436 + +0.2 193,436 + -2.6 193,436 + -0.3 193,436 + +0.6 193,437 - -1.0 193,437 - +0.0 193,437 - +0.6 193,437 - +0.6 193,445 + +0.5 193,445 + -1.7 193,445 + -0.5 193,445 + -0.3 193,446 - -1.2 193,446 - -0.9 193,446 - +0.2 193,446 - -0.5 193,446 - -1.0 193,458 - -2.2 193,515 + -0.2 193,515 + -0.6 193,515 + -1.0 193,516 - +0.8 193,516 - -1.5 193,516 - +0.7 193,516 - -0.6 193,553 + -0.9 193,553 + -0.9 193,554 - +1.2
Or see this region's nucleotide sequence