Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00166

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00164 and MPMX19_00165 are separated by 14 nucleotidesMPMX19_00165 and MPMX19_00166 overlap by 4 nucleotidesMPMX19_00166 and MPMX19_00167 overlap by 4 nucleotidesMPMX19_00167 and MPMX19_00168 are separated by 11 nucleotides MPMX19_00164: MPMX19_00164 - hypothetical protein, at 172,566 to 174,161 _00164 MPMX19_00165: MPMX19_00165 - hypothetical protein, at 174,176 to 175,015 _00165 MPMX19_00166: MPMX19_00166 - hypothetical protein, at 175,012 to 175,527 _00166 MPMX19_00167: MPMX19_00167 - hypothetical protein, at 175,524 to 175,883 _00167 MPMX19_00168: MPMX19_00168 - hypothetical protein, at 175,895 to 176,920 _00168 Position (kb) 175 176Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 174.159 kb on + strandat 174.159 kb on + strandat 174.160 kb on - strandat 174.160 kb on - strandat 174.270 kb on + strand, within MPMX19_00165at 174.270 kb on + strand, within MPMX19_00165at 174.270 kb on + strand, within MPMX19_00165at 174.270 kb on + strand, within MPMX19_00165at 174.270 kb on + strand, within MPMX19_00165at 174.271 kb on - strand, within MPMX19_00165at 174.271 kb on - strand, within MPMX19_00165at 174.271 kb on - strand, within MPMX19_00165at 174.271 kb on - strand, within MPMX19_00165at 174.271 kb on - strand, within MPMX19_00165at 174.284 kb on + strand, within MPMX19_00165at 174.320 kb on + strand, within MPMX19_00165at 174.320 kb on + strand, within MPMX19_00165at 174.320 kb on + strand, within MPMX19_00165at 174.320 kb on + strand, within MPMX19_00165at 174.320 kb on + strand, within MPMX19_00165at 174.321 kb on - strand, within MPMX19_00165at 174.321 kb on - strand, within MPMX19_00165at 174.383 kb on + strand, within MPMX19_00165at 174.383 kb on + strand, within MPMX19_00165at 174.383 kb on + strand, within MPMX19_00165at 174.383 kb on + strand, within MPMX19_00165at 174.383 kb on + strand, within MPMX19_00165at 174.383 kb on + strand, within MPMX19_00165at 174.384 kb on - strand, within MPMX19_00165at 174.384 kb on - strand, within MPMX19_00165at 174.384 kb on - strand, within MPMX19_00165at 174.384 kb on - strand, within MPMX19_00165at 174.384 kb on - strand, within MPMX19_00165at 174.384 kb on - strand, within MPMX19_00165at 174.384 kb on - strand, within MPMX19_00165at 174.384 kb on - strand, within MPMX19_00165at 174.384 kb on - strand, within MPMX19_00165at 174.384 kb on - strand, within MPMX19_00165at 174.410 kb on + strand, within MPMX19_00165at 174.411 kb on - strand, within MPMX19_00165at 174.420 kb on + strand, within MPMX19_00165at 174.420 kb on + strand, within MPMX19_00165at 174.421 kb on - strand, within MPMX19_00165at 174.421 kb on - strand, within MPMX19_00165at 174.421 kb on - strand, within MPMX19_00165at 174.590 kb on + strand, within MPMX19_00165at 174.590 kb on + strand, within MPMX19_00165at 174.590 kb on + strand, within MPMX19_00165at 174.591 kb on - strand, within MPMX19_00165at 174.591 kb on - strand, within MPMX19_00165at 174.591 kb on - strand, within MPMX19_00165at 174.591 kb on - strand, within MPMX19_00165at 174.591 kb on - strand, within MPMX19_00165at 174.591 kb on - strand, within MPMX19_00165at 174.602 kb on + strand, within MPMX19_00165at 174.602 kb on + strand, within MPMX19_00165at 174.603 kb on - strand, within MPMX19_00165at 174.603 kb on - strand, within MPMX19_00165at 174.603 kb on - strand, within MPMX19_00165at 174.689 kb on + strand, within MPMX19_00165at 174.689 kb on + strand, within MPMX19_00165at 174.689 kb on + strand, within MPMX19_00165at 174.690 kb on - strand, within MPMX19_00165at 174.690 kb on - strand, within MPMX19_00165at 174.690 kb on - strand, within MPMX19_00165at 174.767 kb on + strand, within MPMX19_00165at 174.767 kb on + strand, within MPMX19_00165at 174.767 kb on + strand, within MPMX19_00165at 174.767 kb on + strand, within MPMX19_00165at 174.767 kb on + strand, within MPMX19_00165at 174.767 kb on + strand, within MPMX19_00165at 174.768 kb on - strand, within MPMX19_00165at 174.768 kb on - strand, within MPMX19_00165at 174.768 kb on - strand, within MPMX19_00165at 175.362 kb on + strand, within MPMX19_00166at 175.363 kb on - strand, within MPMX19_00166at 175.363 kb on - strand, within MPMX19_00166at 175.363 kb on - strand, within MPMX19_00166at 175.782 kb on + strand, within MPMX19_00167at 175.783 kb on - strand, within MPMX19_00167at 175.783 kb on - strand, within MPMX19_00167at 175.783 kb on - strand, within MPMX19_00167at 175.904 kb on + strandat 175.904 kb on + strandat 175.904 kb on + strandat 175.904 kb on + strandat 175.904 kb on + strandat 175.904 kb on + strandat 175.904 kb on + strandat 175.904 kb on + strandat 175.904 kb on + strandat 175.904 kb on + strandat 175.904 kb on + strandat 175.904 kb on + strandat 175.904 kb on + strandat 175.904 kb on + strandat 175.904 kb on + strandat 175.904 kb on + strandat 175.904 kb on + strandat 175.904 kb on + strandat 175.904 kb on + strandat 175.904 kb on + strandat 175.904 kb on + strandat 175.904 kb on + strandat 175.904 kb on + strandat 175.904 kb on + strandat 175.904 kb on + strandat 175.904 kb on + strandat 175.904 kb on + strandat 175.904 kb on + strandat 175.904 kb on + strandat 175.904 kb on + strandat 175.905 kb on - strandat 175.905 kb on - strandat 175.905 kb on - strandat 175.905 kb on - strandat 175.905 kb on - strandat 175.905 kb on - strandat 175.905 kb on - strandat 175.905 kb on - strandat 175.905 kb on - strandat 175.905 kb on - strandat 175.905 kb on - strandat 175.905 kb on - strandat 175.905 kb on - strandat 175.905 kb on - strandat 175.905 kb on - strandat 175.905 kb on - strandat 175.905 kb on - strandat 175.905 kb on - strandat 175.905 kb on - strandat 175.905 kb on - strandat 175.905 kb on - strandat 175.905 kb on - strandat 175.905 kb on - strandat 176.126 kb on + strand, within MPMX19_00168at 176.126 kb on + strand, within MPMX19_00168at 176.126 kb on + strand, within MPMX19_00168at 176.126 kb on + strand, within MPMX19_00168at 176.126 kb on + strand, within MPMX19_00168at 176.126 kb on + strand, within MPMX19_00168at 176.126 kb on + strand, within MPMX19_00168at 176.127 kb on - strand, within MPMX19_00168at 176.127 kb on - strand, within MPMX19_00168at 176.127 kb on - strand, within MPMX19_00168at 176.127 kb on - strand, within MPMX19_00168at 176.127 kb on - strand, within MPMX19_00168at 176.127 kb on - strand, within MPMX19_00168at 176.127 kb on - strand, within MPMX19_00168at 176.127 kb on - strand, within MPMX19_00168at 176.127 kb on - strand, within MPMX19_00168at 176.127 kb on - strand, within MPMX19_00168at 176.127 kb on - strand, within MPMX19_00168at 176.127 kb on - strand, within MPMX19_00168at 176.127 kb on - strand, within MPMX19_00168at 176.127 kb on - strand, within MPMX19_00168at 176.127 kb on - strand, within MPMX19_00168at 176.127 kb on - strand, within MPMX19_00168at 176.337 kb on - strand, within MPMX19_00168at 176.337 kb on - strand, within MPMX19_00168at 176.337 kb on - strand, within MPMX19_00168at 176.429 kb on + strand, within MPMX19_00168at 176.430 kb on - strand, within MPMX19_00168at 176.430 kb on - strand, within MPMX19_00168at 176.430 kb on - strand, within MPMX19_00168

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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174,159 + -0.5
174,159 + +0.1
174,160 - -1.8
174,160 - +0.5
174,270 + MPMX19_00165 0.11 -1.0
174,270 + MPMX19_00165 0.11 -1.1
174,270 + MPMX19_00165 0.11 -0.7
174,270 + MPMX19_00165 0.11 -1.3
174,270 + MPMX19_00165 0.11 -0.3
174,271 - MPMX19_00165 0.11 +0.7
174,271 - MPMX19_00165 0.11 -0.2
174,271 - MPMX19_00165 0.11 +2.2
174,271 - MPMX19_00165 0.11 -1.7
174,271 - MPMX19_00165 0.11 -0.8
174,284 + MPMX19_00165 0.13 +0.6
174,320 + MPMX19_00165 0.17 +1.1
174,320 + MPMX19_00165 0.17 -0.6
174,320 + MPMX19_00165 0.17 -1.0
174,320 + MPMX19_00165 0.17 -2.5
174,320 + MPMX19_00165 0.17 -0.2
174,321 - MPMX19_00165 0.17 +0.9
174,321 - MPMX19_00165 0.17 -0.8
174,383 + MPMX19_00165 0.25 -0.3
174,383 + MPMX19_00165 0.25 -0.4
174,383 + MPMX19_00165 0.25 -0.6
174,383 + MPMX19_00165 0.25 +0.3
174,383 + MPMX19_00165 0.25 -0.4
174,383 + MPMX19_00165 0.25 -0.2
174,384 - MPMX19_00165 0.25 -1.7
174,384 - MPMX19_00165 0.25 -0.4
174,384 - MPMX19_00165 0.25 -1.8
174,384 - MPMX19_00165 0.25 -0.7
174,384 - MPMX19_00165 0.25 -0.4
174,384 - MPMX19_00165 0.25 +0.3
174,384 - MPMX19_00165 0.25 -1.5
174,384 - MPMX19_00165 0.25 +1.2
174,384 - MPMX19_00165 0.25 -1.2
174,384 - MPMX19_00165 0.25 +0.5
174,410 + MPMX19_00165 0.28 +0.4
174,411 - MPMX19_00165 0.28 -0.3
174,420 + MPMX19_00165 0.29 +0.4
174,420 + MPMX19_00165 0.29 -0.9
174,421 - MPMX19_00165 0.29 +0.1
174,421 - MPMX19_00165 0.29 -1.4
174,421 - MPMX19_00165 0.29 +1.2
174,590 + MPMX19_00165 0.49 -0.4
174,590 + MPMX19_00165 0.49 +0.2
174,590 + MPMX19_00165 0.49 +0.1
174,591 - MPMX19_00165 0.49 +0.6
174,591 - MPMX19_00165 0.49 +0.6
174,591 - MPMX19_00165 0.49 +1.0
174,591 - MPMX19_00165 0.49 -0.3
174,591 - MPMX19_00165 0.49 -0.0
174,591 - MPMX19_00165 0.49 -0.2
174,602 + MPMX19_00165 0.51 +0.2
174,602 + MPMX19_00165 0.51 -0.1
174,603 - MPMX19_00165 0.51 -0.6
174,603 - MPMX19_00165 0.51 -1.6
174,603 - MPMX19_00165 0.51 -0.2
174,689 + MPMX19_00165 0.61 -1.8
174,689 + MPMX19_00165 0.61 -0.3
174,689 + MPMX19_00165 0.61 -0.9
174,690 - MPMX19_00165 0.61 -0.8
174,690 - MPMX19_00165 0.61 -0.5
174,690 - MPMX19_00165 0.61 -1.5
174,767 + MPMX19_00165 0.70 +1.8
174,767 + MPMX19_00165 0.70 +2.2
174,767 + MPMX19_00165 0.70 -0.4
174,767 + MPMX19_00165 0.70 +0.2
174,767 + MPMX19_00165 0.70 -1.1
174,767 + MPMX19_00165 0.70 -0.2
174,768 - MPMX19_00165 0.70 +0.4
174,768 - MPMX19_00165 0.70 +0.2
174,768 - MPMX19_00165 0.70 -0.5
175,362 + MPMX19_00166 0.68 -1.7
175,363 - MPMX19_00166 0.68 +1.2
175,363 - MPMX19_00166 0.68 +0.6
175,363 - MPMX19_00166 0.68 +0.3
175,782 + MPMX19_00167 0.72 -0.5
175,783 - MPMX19_00167 0.72 -1.2
175,783 - MPMX19_00167 0.72 -0.2
175,783 - MPMX19_00167 0.72 -0.6
175,904 + -0.6
175,904 + +0.4
175,904 + -0.3
175,904 + -0.5
175,904 + -1.9
175,904 + -0.6
175,904 + -0.6
175,904 + +0.6
175,904 + -1.5
175,904 + -1.0
175,904 + +0.6
175,904 + -1.6
175,904 + -0.6
175,904 + -0.2
175,904 + -0.6
175,904 + -2.2
175,904 + -2.8
175,904 + -1.1
175,904 + -1.2
175,904 + +0.0
175,904 + -1.2
175,904 + -1.6
175,904 + -0.7
175,904 + -0.2
175,904 + -0.4
175,904 + -1.0
175,904 + -0.6
175,904 + +0.5
175,904 + -1.0
175,904 + -0.5
175,905 - -0.8
175,905 - -1.3
175,905 - +1.0
175,905 - -1.2
175,905 - -0.4
175,905 - -1.3
175,905 - -1.7
175,905 - -0.2
175,905 - +0.6
175,905 - -2.2
175,905 - -0.2
175,905 - +0.2
175,905 - +0.4
175,905 - -0.6
175,905 - +0.6
175,905 - -0.1
175,905 - -1.0
175,905 - -1.2
175,905 - -1.6
175,905 - -0.7
175,905 - -0.6
175,905 - -0.2
175,905 - -0.0
176,126 + MPMX19_00168 0.23 -1.5
176,126 + MPMX19_00168 0.23 +1.2
176,126 + MPMX19_00168 0.23 -0.5
176,126 + MPMX19_00168 0.23 -2.0
176,126 + MPMX19_00168 0.23 -0.3
176,126 + MPMX19_00168 0.23 -0.8
176,126 + MPMX19_00168 0.23 -1.3
176,127 - MPMX19_00168 0.23 +0.6
176,127 - MPMX19_00168 0.23 -0.6
176,127 - MPMX19_00168 0.23 -0.3
176,127 - MPMX19_00168 0.23 -1.5
176,127 - MPMX19_00168 0.23 -1.2
176,127 - MPMX19_00168 0.23 -0.6
176,127 - MPMX19_00168 0.23 +0.2
176,127 - MPMX19_00168 0.23 -0.3
176,127 - MPMX19_00168 0.23 -0.7
176,127 - MPMX19_00168 0.23 +0.1
176,127 - MPMX19_00168 0.23 -0.7
176,127 - MPMX19_00168 0.23 -0.8
176,127 - MPMX19_00168 0.23 -0.6
176,127 - MPMX19_00168 0.23 +0.1
176,127 - MPMX19_00168 0.23 +0.1
176,127 - MPMX19_00168 0.23 -0.6
176,337 - MPMX19_00168 0.43 +0.6
176,337 - MPMX19_00168 0.43 -0.6
176,337 - MPMX19_00168 0.43 -0.6
176,429 + MPMX19_00168 0.52 +0.4
176,430 - MPMX19_00168 0.52 +0.1
176,430 - MPMX19_00168 0.52 -0.6
176,430 - MPMX19_00168 0.52 +1.3

Or see this region's nucleotide sequence