Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00155 and MPMX19_00156 are separated by 904 nucleotides
MPMX19_00155: MPMX19_00155 - hypothetical protein, at 163,086 to 163,607
_00155
MPMX19_00156: MPMX19_00156 - hypothetical protein, at 164,512 to 165,792
_00156
Position (kb) 164
165
166 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 163.625 kb on + strand at 163.625 kb on + strand at 163.625 kb on + strand at 163.625 kb on + strand at 163.626 kb on - strand at 163.626 kb on - strand at 163.626 kb on - strand at 163.626 kb on - strand at 163.626 kb on - strand at 163.626 kb on - strand at 163.626 kb on - strand at 163.626 kb on - strand at 163.683 kb on + strand at 163.683 kb on + strand at 163.683 kb on + strand at 163.683 kb on + strand at 163.683 kb on + strand at 163.683 kb on + strand at 163.683 kb on + strand at 163.683 kb on + strand at 163.683 kb on + strand at 163.683 kb on + strand at 163.683 kb on + strand at 163.684 kb on - strand at 163.684 kb on - strand at 163.684 kb on - strand at 163.684 kb on - strand at 163.684 kb on - strand at 163.684 kb on - strand at 163.684 kb on - strand at 163.684 kb on - strand at 163.684 kb on - strand at 163.684 kb on - strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.805 kb on + strand at 163.806 kb on - strand at 163.806 kb on - strand at 163.806 kb on - strand at 163.806 kb on - strand at 163.806 kb on - strand at 163.806 kb on - strand at 163.806 kb on - strand at 163.806 kb on - strand at 163.806 kb on - strand at 163.806 kb on - strand at 163.806 kb on - strand at 163.806 kb on - strand at 163.806 kb on - strand at 163.806 kb on - strand at 163.806 kb on - strand at 163.806 kb on - strand at 163.806 kb on - strand at 163.806 kb on - strand at 163.806 kb on - strand at 163.806 kb on - strand at 163.806 kb on - strand at 163.806 kb on - strand at 163.806 kb on - strand at 163.806 kb on - strand at 163.806 kb on - strand at 163.806 kb on - strand at 163.806 kb on - strand at 163.806 kb on - strand at 163.806 kb on - strand at 163.806 kb on - strand at 163.874 kb on + strand at 163.874 kb on + strand at 163.874 kb on + strand at 163.874 kb on + strand at 163.874 kb on + strand at 163.874 kb on + strand at 163.875 kb on - strand at 163.875 kb on - strand at 163.875 kb on - strand at 163.875 kb on - strand at 163.875 kb on - strand at 163.875 kb on - strand at 163.875 kb on - strand at 163.875 kb on - strand at 163.875 kb on - strand at 163.875 kb on - strand at 163.875 kb on - strand at 163.875 kb on - strand at 163.875 kb on - strand at 163.876 kb on + strand at 163.876 kb on + strand at 163.876 kb on + strand at 163.876 kb on + strand at 163.876 kb on + strand at 163.876 kb on + strand at 163.876 kb on + strand at 163.876 kb on + strand at 163.876 kb on + strand at 163.876 kb on + strand at 163.876 kb on + strand at 163.876 kb on + strand at 163.876 kb on + strand at 163.877 kb on - strand at 163.877 kb on - strand at 163.877 kb on - strand at 163.877 kb on - strand at 163.877 kb on - strand at 163.877 kb on - strand at 163.877 kb on - strand at 163.877 kb on - strand at 163.877 kb on - strand at 163.877 kb on - strand at 163.877 kb on - strand at 163.877 kb on - strand at 163.877 kb on - strand at 163.940 kb on + strand at 163.940 kb on + strand at 163.940 kb on + strand at 163.940 kb on + strand at 163.940 kb on + strand at 163.940 kb on + strand at 163.940 kb on + strand at 163.940 kb on + strand at 163.940 kb on + strand at 163.940 kb on + strand at 163.940 kb on + strand at 163.940 kb on + strand at 163.940 kb on + strand at 163.940 kb on + strand at 163.940 kb on + strand at 163.961 kb on - strand at 163.963 kb on + strand at 163.963 kb on + strand at 163.963 kb on + strand at 163.964 kb on - strand at 163.964 kb on - strand at 163.964 kb on - strand at 163.964 kb on - strand at 163.989 kb on - strand at 163.989 kb on - strand at 163.989 kb on - strand at 163.989 kb on - strand at 163.989 kb on - strand at 163.989 kb on - strand at 163.989 kb on - strand at 163.989 kb on - strand at 163.989 kb on - strand at 163.989 kb on - strand at 163.989 kb on - strand at 163.989 kb on - strand at 163.989 kb on - strand at 163.989 kb on - strand at 163.989 kb on - strand at 163.989 kb on - strand at 163.989 kb on - strand at 164.046 kb on + strand at 164.046 kb on + strand at 164.046 kb on + strand at 164.046 kb on + strand at 164.046 kb on + strand at 164.047 kb on - strand at 164.047 kb on - strand at 164.047 kb on - strand at 164.047 kb on - strand at 164.213 kb on + strand at 164.213 kb on + strand at 164.214 kb on - strand at 164.214 kb on - strand at 164.214 kb on - strand at 164.214 kb on - strand at 164.214 kb on - strand at 164.270 kb on - strand at 164.270 kb on - strand at 164.324 kb on + strand at 164.325 kb on - strand at 164.325 kb on - strand at 164.336 kb on - strand at 164.336 kb on - strand at 164.339 kb on + strand at 164.339 kb on + strand at 164.340 kb on - strand at 164.340 kb on - strand at 164.340 kb on - strand at 164.345 kb on - strand at 164.476 kb on + strand at 164.479 kb on - strand at 164.480 kb on + strand at 164.599 kb on - strand at 164.609 kb on + strand at 164.625 kb on + strand at 164.660 kb on + strand, within MPMX19_00156 at 164.847 kb on + strand, within MPMX19_00156 at 164.848 kb on - strand, within MPMX19_00156 at 164.848 kb on - strand, within MPMX19_00156 at 164.858 kb on + strand, within MPMX19_00156 at 164.965 kb on - strand, within MPMX19_00156 at 165.077 kb on - strand, within MPMX19_00156 at 165.080 kb on + strand, within MPMX19_00156 at 165.086 kb on - strand, within MPMX19_00156 at 165.183 kb on + strand, within MPMX19_00156 at 165.183 kb on + strand, within MPMX19_00156 at 165.304 kb on + strand, within MPMX19_00156 at 165.306 kb on + strand, within MPMX19_00156 at 165.344 kb on + strand, within MPMX19_00156 at 165.351 kb on - strand, within MPMX19_00156 at 165.371 kb on + strand, within MPMX19_00156 at 165.455 kb on + strand, within MPMX19_00156 at 165.456 kb on - strand, within MPMX19_00156 at 165.456 kb on - strand, within MPMX19_00156 at 165.456 kb on - strand, within MPMX19_00156 at 165.456 kb on - strand, within MPMX19_00156 at 165.456 kb on - strand, within MPMX19_00156 at 165.534 kb on + strand, within MPMX19_00156 at 165.538 kb on - strand, within MPMX19_00156 at 165.586 kb on - strand, within MPMX19_00156 at 165.594 kb on + strand, within MPMX19_00156 at 165.728 kb on + strand at 165.793 kb on + strand at 165.887 kb on + strand at 165.887 kb on + strand at 165.887 kb on + strand at 165.887 kb on + strand at 165.945 kb on + strand at 165.945 kb on + strand at 165.946 kb on - strand at 165.946 kb on - strand at 165.946 kb on - strand at 165.962 kb on + strand at 165.962 kb on + strand at 165.962 kb on + strand at 165.962 kb on + strand at 165.963 kb on - strand at 165.963 kb on - strand at 165.963 kb on - strand at 166.048 kb on - strand at 166.082 kb on + strand at 166.082 kb on + strand at 166.083 kb on - strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.163 kb on + strand at 166.164 kb on - strand at 166.164 kb on - strand at 166.164 kb on - strand at 166.164 kb on - strand at 166.164 kb on - strand at 166.164 kb on - strand at 166.164 kb on - strand at 166.164 kb on - strand at 166.164 kb on - strand at 166.164 kb on - strand at 166.164 kb on - strand at 166.164 kb on - strand at 166.164 kb on - strand at 166.164 kb on - strand at 166.164 kb on - strand at 166.164 kb on - strand at 166.164 kb on - strand at 166.164 kb on - strand at 166.164 kb on - strand at 166.164 kb on - strand at 166.164 kb on - strand at 166.164 kb on - strand at 166.164 kb on - strand at 166.164 kb on - strand at 166.164 kb on - strand at 166.164 kb on - strand at 166.164 kb on - strand at 166.366 kb on + strand at 166.367 kb on - strand at 166.367 kb on - strand at 166.367 kb on - strand at 166.376 kb on + strand at 166.376 kb on + strand at 166.376 kb on + strand at 166.377 kb on - strand at 166.377 kb on - strand at 166.377 kb on - strand at 166.377 kb on - strand at 166.377 kb on - strand at 166.377 kb on - strand at 166.377 kb on - strand at 166.377 kb on - strand at 166.377 kb on - strand at 166.377 kb on - strand at 166.377 kb on - strand at 166.473 kb on - strand at 166.487 kb on + strand at 166.487 kb on + strand at 166.487 kb on + strand at 166.487 kb on + strand at 166.487 kb on + strand at 166.487 kb on + strand at 166.487 kb on + strand at 166.488 kb on - strand at 166.488 kb on - strand at 166.488 kb on - strand at 166.488 kb on - strand at 166.509 kb on + strand at 166.510 kb on - strand at 166.510 kb on - strand at 166.510 kb on - strand at 166.567 kb on + strand at 166.567 kb on + strand at 166.567 kb on + strand at 166.567 kb on + strand at 166.567 kb on + strand at 166.568 kb on - strand at 166.568 kb on - strand at 166.568 kb on - strand at 166.568 kb on - strand at 166.568 kb on - strand at 166.568 kb on - strand at 166.568 kb on - strand at 166.568 kb on - strand at 166.568 kb on - strand at 166.568 kb on - strand at 166.568 kb on - strand at 166.568 kb on - strand at 166.613 kb on + strand at 166.613 kb on + strand at 166.613 kb on + strand at 166.614 kb on - strand at 166.622 kb on + strand at 166.622 kb on + strand at 166.622 kb on + strand at 166.623 kb on - strand at 166.623 kb on - strand at 166.637 kb on + strand at 166.682 kb on - strand at 166.682 kb on - strand at 166.690 kb on + strand at 166.691 kb on - strand at 166.702 kb on - strand at 166.716 kb on + strand at 166.716 kb on + strand at 166.716 kb on + strand at 166.716 kb on + strand at 166.716 kb on + strand at 166.717 kb on - strand at 166.717 kb on - strand at 166.717 kb on - strand at 166.742 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 163,625 + -1.9 163,625 + -1.0 163,625 + -0.6 163,625 + +1.2 163,626 - -1.4 163,626 - -0.5 163,626 - -1.4 163,626 - +0.2 163,626 - +0.6 163,626 - +0.2 163,626 - -1.5 163,626 - -0.5 163,683 + +0.3 163,683 + -0.6 163,683 + -1.2 163,683 + +0.6 163,683 + -1.2 163,683 + +0.2 163,683 + -0.3 163,683 + -0.2 163,683 + -0.7 163,683 + -1.3 163,683 + -0.6 163,684 - -0.9 163,684 - +0.0 163,684 - -2.0 163,684 - +0.8 163,684 - +0.4 163,684 - -1.1 163,684 - -1.2 163,684 - +0.8 163,684 - +1.2 163,684 - -2.2 163,805 + -1.0 163,805 + -2.4 163,805 + -0.7 163,805 + -0.6 163,805 + -1.0 163,805 + -0.5 163,805 + -0.7 163,805 + -1.8 163,805 + -0.5 163,805 + +0.7 163,805 + +0.8 163,805 + -0.4 163,805 + +0.4 163,805 + -1.4 163,805 + -0.3 163,805 + -0.0 163,805 + +1.3 163,805 + -0.4 163,805 + -1.0 163,805 + -0.7 163,805 + +0.2 163,805 + +0.3 163,805 + +0.6 163,805 + -1.2 163,805 + -0.3 163,805 + +0.5 163,805 + +0.7 163,805 + -0.4 163,805 + -0.8 163,805 + -0.9 163,805 + -1.1 163,805 + -0.2 163,806 - +0.3 163,806 - -0.1 163,806 - -1.5 163,806 - +0.8 163,806 - +0.9 163,806 - -0.3 163,806 - -0.8 163,806 - -0.2 163,806 - -0.2 163,806 - +1.2 163,806 - -2.2 163,806 - +0.5 163,806 - -1.0 163,806 - -0.2 163,806 - -1.3 163,806 - -1.9 163,806 - -0.8 163,806 - -0.8 163,806 - -0.6 163,806 - -0.1 163,806 - -1.4 163,806 - -1.3 163,806 - +0.1 163,806 - +0.2 163,806 - +1.0 163,806 - -0.4 163,806 - -0.3 163,806 - -2.6 163,806 - -1.4 163,806 - -1.0 163,874 + -2.1 163,874 + -0.4 163,874 + -0.8 163,874 + -2.0 163,874 + -1.4 163,874 + +0.0 163,875 - -0.8 163,875 - -0.3 163,875 - -0.1 163,875 - +1.1 163,875 - -1.4 163,875 - +0.2 163,875 - -0.2 163,875 - -1.0 163,875 - -0.9 163,875 - -1.0 163,875 - +2.2 163,875 - -0.7 163,875 - -0.3 163,876 + -0.2 163,876 + +1.2 163,876 + +0.3 163,876 + +0.3 163,876 + +1.4 163,876 + +1.6 163,876 + -0.1 163,876 + +0.6 163,876 + -0.2 163,876 + -1.2 163,876 + -0.2 163,876 + -0.6 163,876 + -0.6 163,877 - -0.4 163,877 - -1.2 163,877 - -2.2 163,877 - -0.2 163,877 - +0.3 163,877 - -0.2 163,877 - -1.1 163,877 - -0.2 163,877 - -0.7 163,877 - -0.0 163,877 - -1.5 163,877 - -1.4 163,877 - +0.2 163,940 + -2.0 163,940 + -0.7 163,940 + -0.6 163,940 + -1.0 163,940 + +0.7 163,940 + -1.8 163,940 + -0.2 163,940 + -0.9 163,940 + -0.4 163,940 + -0.8 163,940 + +0.2 163,940 + +3.8 163,940 + -0.4 163,940 + +0.3 163,940 + -0.2 163,961 - -0.3 163,963 + -0.4 163,963 + -0.9 163,963 + -2.2 163,964 - +0.2 163,964 - -1.7 163,964 - -1.2 163,964 - -0.0 163,989 - +2.6 163,989 - +0.3 163,989 - -0.2 163,989 - +0.2 163,989 - -0.4 163,989 - +0.5 163,989 - -1.0 163,989 - -2.2 163,989 - -0.2 163,989 - +0.4 163,989 - -1.4 163,989 - -1.6 163,989 - -0.6 163,989 - -1.5 163,989 - -1.2 163,989 - -1.5 163,989 - +0.6 164,046 + +0.3 164,046 + -0.6 164,046 + +0.2 164,046 + +0.1 164,046 + -0.3 164,047 - -0.2 164,047 - -1.0 164,047 - -0.2 164,047 - -0.5 164,213 + -2.2 164,213 + -2.4 164,214 - +0.8 164,214 - +0.4 164,214 - -0.9 164,214 - -0.5 164,214 - -0.9 164,270 - -0.2 164,270 - -1.3 164,324 + +1.4 164,325 - -0.3 164,325 - -0.9 164,336 - -1.4 164,336 - +1.2 164,339 + +0.7 164,339 + -0.0 164,340 - -0.3 164,340 - -2.1 164,340 - +0.1 164,345 - +1.0 164,476 + +0.2 164,479 - -1.2 164,480 + -1.2 164,599 - -0.3 164,609 + -0.4 164,625 + -1.6 164,660 + MPMX19_00156 0.12 -0.8 164,847 + MPMX19_00156 0.26 +0.3 164,848 - MPMX19_00156 0.26 -0.5 164,848 - MPMX19_00156 0.26 -0.4 164,858 + MPMX19_00156 0.27 +0.6 164,965 - MPMX19_00156 0.35 -0.4 165,077 - MPMX19_00156 0.44 +0.2 165,080 + MPMX19_00156 0.44 +0.2 165,086 - MPMX19_00156 0.45 -1.4 165,183 + MPMX19_00156 0.52 -1.2 165,183 + MPMX19_00156 0.52 -0.8 165,304 + MPMX19_00156 0.62 -1.2 165,306 + MPMX19_00156 0.62 +0.8 165,344 + MPMX19_00156 0.65 -2.0 165,351 - MPMX19_00156 0.65 -1.0 165,371 + MPMX19_00156 0.67 -0.8 165,455 + MPMX19_00156 0.74 -1.0 165,456 - MPMX19_00156 0.74 -2.3 165,456 - MPMX19_00156 0.74 -0.6 165,456 - MPMX19_00156 0.74 +0.4 165,456 - MPMX19_00156 0.74 -0.2 165,456 - MPMX19_00156 0.74 -1.7 165,534 + MPMX19_00156 0.80 -1.6 165,538 - MPMX19_00156 0.80 -1.0 165,586 - MPMX19_00156 0.84 +0.9 165,594 + MPMX19_00156 0.84 +0.8 165,728 + -0.3 165,793 + -0.1 165,887 + -0.4 165,887 + -0.2 165,887 + -0.0 165,887 + -2.7 165,945 + -1.4 165,945 + -1.5 165,946 - -1.2 165,946 - -2.5 165,946 - -1.0 165,962 + -0.5 165,962 + +0.6 165,962 + -0.7 165,962 + +0.2 165,963 - +0.4 165,963 - +0.6 165,963 - -0.2 166,048 - +0.6 166,082 + -1.0 166,082 + -0.4 166,083 - +1.2 166,163 + -0.2 166,163 + -1.6 166,163 + -1.1 166,163 + -1.7 166,163 + -1.2 166,163 + -0.6 166,163 + -0.4 166,163 + -0.9 166,163 + -1.8 166,163 + +0.7 166,163 + -0.2 166,163 + +0.0 166,163 + +0.8 166,163 + -1.2 166,163 + -0.9 166,163 + +0.8 166,163 + -0.6 166,163 + +2.0 166,163 + -1.3 166,163 + +0.6 166,163 + +1.0 166,163 + +2.8 166,163 + -1.1 166,163 + +0.6 166,163 + +0.7 166,163 + -0.1 166,163 + -0.4 166,163 + -1.8 166,163 + -0.2 166,163 + -1.3 166,163 + -0.5 166,163 + -0.7 166,163 + -1.5 166,163 + +1.4 166,163 + -1.0 166,163 + +0.6 166,163 + -1.9 166,164 - -1.2 166,164 - -1.3 166,164 - +0.4 166,164 - -0.1 166,164 - -0.6 166,164 - -1.2 166,164 - -0.6 166,164 - -0.4 166,164 - +0.5 166,164 - +0.3 166,164 - +1.2 166,164 - +1.2 166,164 - -1.0 166,164 - +0.2 166,164 - -0.3 166,164 - +0.2 166,164 - +0.2 166,164 - -0.4 166,164 - -0.7 166,164 - -0.8 166,164 - +0.6 166,164 - -1.7 166,164 - -0.2 166,164 - -0.2 166,164 - -1.7 166,164 - -1.3 166,164 - +1.6 166,366 + +0.8 166,367 - +1.6 166,367 - -2.4 166,367 - -0.8 166,376 + +0.6 166,376 + -1.8 166,376 + -1.2 166,377 - -1.0 166,377 - -1.1 166,377 - -1.4 166,377 - +0.2 166,377 - -0.6 166,377 - -0.8 166,377 - +1.2 166,377 - +0.5 166,377 - +0.2 166,377 - +1.5 166,377 - -1.4 166,473 - -0.3 166,487 + +0.9 166,487 + -1.2 166,487 + -1.3 166,487 + -2.5 166,487 + +0.1 166,487 + +0.6 166,487 + -1.2 166,488 - -0.8 166,488 - -0.6 166,488 - -0.6 166,488 - -0.8 166,509 + -1.7 166,510 - -1.3 166,510 - -0.8 166,510 - -0.4 166,567 + +0.2 166,567 + -0.2 166,567 + -2.1 166,567 + -0.2 166,567 + -1.0 166,568 - +0.1 166,568 - -0.7 166,568 - -0.4 166,568 - -1.7 166,568 - -0.6 166,568 - -0.4 166,568 - -0.2 166,568 - +0.9 166,568 - -0.8 166,568 - -0.4 166,568 - +0.2 166,568 - -0.2 166,613 + +0.4 166,613 + -0.4 166,613 + -0.2 166,614 - -0.2 166,622 + -1.1 166,622 + +0.6 166,622 + +0.2 166,623 - +0.4 166,623 - -0.6 166,637 + +1.0 166,682 - -0.8 166,682 - -0.5 166,690 + -0.2 166,691 - -1.2 166,702 - -0.6 166,716 + -0.4 166,716 + -0.9 166,716 + -0.6 166,716 + -0.2 166,716 + -0.3 166,717 - -0.1 166,717 - -1.9 166,717 - +0.9 166,742 - -0.8
Or see this region's nucleotide sequence