Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00090 and MPMX19_00091 are separated by 66 nucleotides MPMX19_00091 and MPMX19_00092 are separated by 159 nucleotides MPMX19_00092 and MPMX19_00093 are separated by 497 nucleotides MPMX19_00093 and MPMX19_00094 overlap by 17 nucleotides
MPMX19_00090: MPMX19_00090 - L-asparaginase 1, at 96,529 to 97,617
_00090
MPMX19_00091: MPMX19_00091 - hypothetical protein, at 97,684 to 98,298
_00091
MPMX19_00092: MPMX19_00092 - Elongation factor 4, at 98,458 to 100,260
_00092
MPMX19_00093: MPMX19_00093 - hypothetical protein, at 100,758 to 101,129
_00093
MPMX19_00094: MPMX19_00094 - hypothetical protein, at 101,113 to 101,391
_00094
Position (kb) 98
99
100
101 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 97.490 kb on - strand, within MPMX19_00090 at 97.490 kb on - strand, within MPMX19_00090 at 97.513 kb on + strand at 97.513 kb on + strand at 97.513 kb on + strand at 97.513 kb on + strand at 97.513 kb on + strand at 97.513 kb on + strand at 97.514 kb on - strand at 97.514 kb on - strand at 97.514 kb on - strand at 97.514 kb on - strand at 97.514 kb on - strand at 97.672 kb on + strand at 97.672 kb on + strand at 97.672 kb on + strand at 97.672 kb on + strand at 97.672 kb on + strand at 97.672 kb on + strand at 97.673 kb on - strand at 97.673 kb on - strand at 97.673 kb on - strand at 97.673 kb on - strand at 97.673 kb on - strand at 97.673 kb on - strand at 97.673 kb on - strand at 97.673 kb on - strand at 97.673 kb on - strand at 97.673 kb on - strand at 97.685 kb on + strand at 97.685 kb on + strand at 97.685 kb on + strand at 97.685 kb on + strand at 97.685 kb on + strand at 97.685 kb on + strand at 97.686 kb on - strand at 97.686 kb on - strand at 97.686 kb on - strand at 97.686 kb on - strand at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.934 kb on + strand, within MPMX19_00091 at 97.934 kb on + strand, within MPMX19_00091 at 97.934 kb on + strand, within MPMX19_00091 at 97.934 kb on + strand, within MPMX19_00091 at 97.934 kb on + strand, within MPMX19_00091 at 97.935 kb on - strand, within MPMX19_00091 at 97.935 kb on - strand, within MPMX19_00091 at 97.935 kb on - strand, within MPMX19_00091 at 97.935 kb on - strand, within MPMX19_00091 at 97.935 kb on - strand, within MPMX19_00091 at 98.401 kb on + strand at 98.401 kb on + strand at 98.401 kb on + strand at 98.401 kb on + strand at 98.402 kb on - strand at 98.417 kb on + strand at 98.417 kb on + strand at 98.418 kb on - strand at 98.419 kb on + strand at 98.419 kb on + strand at 98.419 kb on + strand at 98.420 kb on - strand at 98.460 kb on - strand at 100.296 kb on - strand at 100.296 kb on - strand at 100.296 kb on - strand at 100.296 kb on - strand at 100.353 kb on - strand at 100.649 kb on + strand at 100.649 kb on + strand at 100.649 kb on + strand at 100.649 kb on + strand at 100.649 kb on + strand at 100.650 kb on - strand at 100.650 kb on - strand at 100.650 kb on - strand at 100.650 kb on - strand at 100.650 kb on - strand at 100.650 kb on - strand at 100.650 kb on - strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.676 kb on + strand at 100.676 kb on + strand at 100.712 kb on + strand at 100.712 kb on + strand at 100.712 kb on + strand at 100.712 kb on + strand at 100.713 kb on - strand at 100.713 kb on - strand at 100.713 kb on - strand at 100.713 kb on - strand at 100.713 kb on - strand at 100.739 kb on + strand at 100.740 kb on - strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.760 kb on - strand at 100.760 kb on - strand at 101.258 kb on + strand, within MPMX19_00094 at 101.258 kb on + strand, within MPMX19_00094 at 101.259 kb on - strand, within MPMX19_00094
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 97,490 - MPMX19_00090 0.88 +0.0 97,490 - MPMX19_00090 0.88 -1.1 97,513 + -0.9 97,513 + +1.8 97,513 + +0.2 97,513 + -1.4 97,513 + +0.3 97,513 + -0.6 97,514 - -0.2 97,514 - -1.3 97,514 - +0.3 97,514 - +0.8 97,514 - -0.8 97,672 + -0.9 97,672 + -1.7 97,672 + +0.4 97,672 + -0.6 97,672 + +0.3 97,672 + +0.1 97,673 - -1.7 97,673 - -1.2 97,673 - -2.0 97,673 - +0.3 97,673 - -0.4 97,673 - -1.0 97,673 - +0.2 97,673 - -0.3 97,673 - +1.0 97,673 - -1.0 97,685 + -1.2 97,685 + -0.6 97,685 + +0.3 97,685 + +0.4 97,685 + -0.2 97,685 + -0.2 97,686 - -1.8 97,686 - -0.6 97,686 - -0.0 97,686 - -1.7 97,932 + MPMX19_00091 0.40 +0.6 97,932 + MPMX19_00091 0.40 -1.0 97,932 + MPMX19_00091 0.40 +0.2 97,932 + MPMX19_00091 0.40 -0.1 97,932 + MPMX19_00091 0.40 -1.3 97,932 + MPMX19_00091 0.40 -1.1 97,932 + MPMX19_00091 0.40 -1.5 97,932 + MPMX19_00091 0.40 -1.4 97,932 + MPMX19_00091 0.40 -0.7 97,932 + MPMX19_00091 0.40 -0.4 97,932 + MPMX19_00091 0.40 +0.4 97,932 + MPMX19_00091 0.40 -1.9 97,932 + MPMX19_00091 0.40 -1.2 97,932 + MPMX19_00091 0.40 +0.2 97,932 + MPMX19_00091 0.40 +0.6 97,932 + MPMX19_00091 0.40 -0.6 97,932 + MPMX19_00091 0.40 -1.9 97,932 + MPMX19_00091 0.40 -1.0 97,932 + MPMX19_00091 0.40 +0.2 97,932 + MPMX19_00091 0.40 -0.5 97,932 + MPMX19_00091 0.40 -0.2 97,932 + MPMX19_00091 0.40 -0.5 97,932 + MPMX19_00091 0.40 -0.4 97,932 + MPMX19_00091 0.40 +0.6 97,933 - MPMX19_00091 0.40 -0.8 97,933 - MPMX19_00091 0.40 -0.1 97,933 - MPMX19_00091 0.40 -0.7 97,933 - MPMX19_00091 0.40 -2.2 97,933 - MPMX19_00091 0.40 -1.5 97,933 - MPMX19_00091 0.40 -0.9 97,933 - MPMX19_00091 0.40 -0.3 97,933 - MPMX19_00091 0.40 -0.2 97,933 - MPMX19_00091 0.40 +0.1 97,933 - MPMX19_00091 0.40 -0.7 97,933 - MPMX19_00091 0.40 -1.6 97,933 - MPMX19_00091 0.40 -0.8 97,933 - MPMX19_00091 0.40 -1.3 97,933 - MPMX19_00091 0.40 -0.5 97,933 - MPMX19_00091 0.40 -0.4 97,934 + MPMX19_00091 0.41 +0.3 97,934 + MPMX19_00091 0.41 +1.4 97,934 + MPMX19_00091 0.41 +0.8 97,934 + MPMX19_00091 0.41 -1.9 97,934 + MPMX19_00091 0.41 -0.0 97,935 - MPMX19_00091 0.41 -0.8 97,935 - MPMX19_00091 0.41 -1.0 97,935 - MPMX19_00091 0.41 +0.0 97,935 - MPMX19_00091 0.41 -0.7 97,935 - MPMX19_00091 0.41 -1.4 98,401 + -0.9 98,401 + -0.3 98,401 + +0.8 98,401 + -0.8 98,402 - -0.9 98,417 + -0.6 98,417 + +0.4 98,418 - +0.6 98,419 + +0.1 98,419 + -0.5 98,419 + -1.6 98,420 - -0.6 98,460 - -0.6 100,296 - -1.9 100,296 - +0.3 100,296 - -0.7 100,296 - -0.6 100,353 - -2.6 100,649 + -0.6 100,649 + +0.2 100,649 + -1.4 100,649 + +0.4 100,649 + +0.2 100,650 - +0.2 100,650 - +0.2 100,650 - -0.0 100,650 - +0.1 100,650 - -1.8 100,650 - -0.6 100,650 - +0.6 100,654 + -2.0 100,654 + -1.3 100,654 + -0.4 100,654 + -0.2 100,654 + -0.0 100,654 + +1.4 100,654 + -1.0 100,654 + -0.2 100,654 + +0.5 100,654 + +1.2 100,654 + +0.8 100,654 + +0.7 100,654 + -0.8 100,654 + -0.5 100,654 + -0.2 100,654 + +1.0 100,654 + -1.2 100,654 + -1.9 100,654 + -0.3 100,655 - +0.2 100,655 - +0.2 100,655 - +0.8 100,655 - -0.3 100,655 - +1.0 100,655 - -0.0 100,655 - +0.1 100,655 - -0.1 100,655 - -0.2 100,655 - -0.2 100,655 - -1.0 100,655 - +1.8 100,655 - +0.6 100,655 - -1.0 100,655 - +0.3 100,655 - +0.3 100,655 - -0.6 100,655 - +0.3 100,655 - -0.7 100,655 - +0.8 100,676 + -0.1 100,676 + +0.7 100,712 + -2.2 100,712 + +0.8 100,712 + +0.6 100,712 + -1.6 100,713 - -2.4 100,713 - -1.0 100,713 - -1.5 100,713 - -0.2 100,713 - +1.2 100,739 + -1.3 100,740 - -0.8 100,759 + +0.5 100,759 + -0.8 100,759 + +0.5 100,759 + -1.7 100,759 + +0.6 100,759 + -1.2 100,759 + -0.4 100,759 + -3.2 100,759 + -1.8 100,759 + -1.0 100,759 + -1.3 100,759 + +0.6 100,760 - -0.3 100,760 - -0.3 101,258 + MPMX19_00094 0.52 -0.6 101,258 + MPMX19_00094 0.52 -0.9 101,259 - MPMX19_00094 0.52 -1.0
Or see this region's nucleotide sequence