Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00091

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00090 and MPMX19_00091 are separated by 66 nucleotidesMPMX19_00091 and MPMX19_00092 are separated by 159 nucleotides MPMX19_00090: MPMX19_00090 - L-asparaginase 1, at 96,529 to 97,617 _00090 MPMX19_00091: MPMX19_00091 - hypothetical protein, at 97,684 to 98,298 _00091 MPMX19_00092: MPMX19_00092 - Elongation factor 4, at 98,458 to 100,260 _00092 Position (kb) 97 98 99Strain fitness (log2 ratio) -2 -1 0 1 2at 96.778 kb on + strand, within MPMX19_00090at 96.778 kb on + strand, within MPMX19_00090at 96.779 kb on - strand, within MPMX19_00090at 96.779 kb on - strand, within MPMX19_00090at 96.779 kb on - strand, within MPMX19_00090at 96.787 kb on + strand, within MPMX19_00090at 96.787 kb on + strand, within MPMX19_00090at 96.787 kb on + strand, within MPMX19_00090at 96.787 kb on + strand, within MPMX19_00090at 96.787 kb on + strand, within MPMX19_00090at 96.787 kb on + strand, within MPMX19_00090at 96.787 kb on + strand, within MPMX19_00090at 96.787 kb on + strand, within MPMX19_00090at 96.787 kb on + strand, within MPMX19_00090at 96.788 kb on - strand, within MPMX19_00090at 96.788 kb on - strand, within MPMX19_00090at 96.788 kb on - strand, within MPMX19_00090at 96.788 kb on - strand, within MPMX19_00090at 96.788 kb on - strand, within MPMX19_00090at 96.788 kb on - strand, within MPMX19_00090at 96.788 kb on - strand, within MPMX19_00090at 96.788 kb on - strand, within MPMX19_00090at 96.788 kb on - strand, within MPMX19_00090at 96.788 kb on - strand, within MPMX19_00090at 96.788 kb on - strand, within MPMX19_00090at 96.829 kb on + strand, within MPMX19_00090at 96.829 kb on + strand, within MPMX19_00090at 96.829 kb on + strand, within MPMX19_00090at 96.829 kb on + strand, within MPMX19_00090at 96.829 kb on + strand, within MPMX19_00090at 96.829 kb on + strand, within MPMX19_00090at 96.829 kb on + strand, within MPMX19_00090at 96.829 kb on + strand, within MPMX19_00090at 96.830 kb on - strand, within MPMX19_00090at 96.830 kb on - strand, within MPMX19_00090at 96.830 kb on - strand, within MPMX19_00090at 96.830 kb on - strand, within MPMX19_00090at 96.830 kb on - strand, within MPMX19_00090at 96.830 kb on - strand, within MPMX19_00090at 96.830 kb on - strand, within MPMX19_00090at 96.830 kb on - strand, within MPMX19_00090at 96.991 kb on + strand, within MPMX19_00090at 96.991 kb on + strand, within MPMX19_00090at 96.992 kb on - strand, within MPMX19_00090at 96.992 kb on - strand, within MPMX19_00090at 96.992 kb on - strand, within MPMX19_00090at 96.992 kb on - strand, within MPMX19_00090at 96.992 kb on - strand, within MPMX19_00090at 97.193 kb on + strand, within MPMX19_00090at 97.194 kb on - strand, within MPMX19_00090at 97.194 kb on - strand, within MPMX19_00090at 97.246 kb on + strand, within MPMX19_00090at 97.246 kb on + strand, within MPMX19_00090at 97.247 kb on - strand, within MPMX19_00090at 97.247 kb on - strand, within MPMX19_00090at 97.319 kb on + strand, within MPMX19_00090at 97.319 kb on + strand, within MPMX19_00090at 97.319 kb on + strand, within MPMX19_00090at 97.319 kb on + strand, within MPMX19_00090at 97.327 kb on + strand, within MPMX19_00090at 97.327 kb on + strand, within MPMX19_00090at 97.327 kb on + strand, within MPMX19_00090at 97.328 kb on - strand, within MPMX19_00090at 97.328 kb on - strand, within MPMX19_00090at 97.328 kb on - strand, within MPMX19_00090at 97.450 kb on + strand, within MPMX19_00090at 97.450 kb on + strand, within MPMX19_00090at 97.451 kb on - strand, within MPMX19_00090at 97.451 kb on - strand, within MPMX19_00090at 97.451 kb on - strand, within MPMX19_00090at 97.451 kb on - strand, within MPMX19_00090at 97.451 kb on - strand, within MPMX19_00090at 97.451 kb on - strand, within MPMX19_00090at 97.451 kb on - strand, within MPMX19_00090at 97.451 kb on - strand, within MPMX19_00090at 97.490 kb on - strand, within MPMX19_00090at 97.490 kb on - strand, within MPMX19_00090at 97.513 kb on + strandat 97.513 kb on + strandat 97.513 kb on + strandat 97.513 kb on + strandat 97.513 kb on + strandat 97.513 kb on + strandat 97.514 kb on - strandat 97.514 kb on - strandat 97.514 kb on - strandat 97.514 kb on - strandat 97.514 kb on - strandat 97.672 kb on + strandat 97.672 kb on + strandat 97.672 kb on + strandat 97.672 kb on + strandat 97.672 kb on + strandat 97.672 kb on + strandat 97.673 kb on - strandat 97.673 kb on - strandat 97.673 kb on - strandat 97.673 kb on - strandat 97.673 kb on - strandat 97.673 kb on - strandat 97.673 kb on - strandat 97.673 kb on - strandat 97.673 kb on - strandat 97.673 kb on - strandat 97.685 kb on + strandat 97.685 kb on + strandat 97.685 kb on + strandat 97.685 kb on + strandat 97.685 kb on + strandat 97.685 kb on + strandat 97.686 kb on - strandat 97.686 kb on - strandat 97.686 kb on - strandat 97.686 kb on - strandat 97.932 kb on + strand, within MPMX19_00091at 97.932 kb on + strand, within MPMX19_00091at 97.932 kb on + strand, within MPMX19_00091at 97.932 kb on + strand, within MPMX19_00091at 97.932 kb on + strand, within MPMX19_00091at 97.932 kb on + strand, within MPMX19_00091at 97.932 kb on + strand, within MPMX19_00091at 97.932 kb on + strand, within MPMX19_00091at 97.932 kb on + strand, within MPMX19_00091at 97.932 kb on + strand, within MPMX19_00091at 97.932 kb on + strand, within MPMX19_00091at 97.932 kb on + strand, within MPMX19_00091at 97.932 kb on + strand, within MPMX19_00091at 97.932 kb on + strand, within MPMX19_00091at 97.932 kb on + strand, within MPMX19_00091at 97.932 kb on + strand, within MPMX19_00091at 97.932 kb on + strand, within MPMX19_00091at 97.932 kb on + strand, within MPMX19_00091at 97.932 kb on + strand, within MPMX19_00091at 97.932 kb on + strand, within MPMX19_00091at 97.932 kb on + strand, within MPMX19_00091at 97.932 kb on + strand, within MPMX19_00091at 97.932 kb on + strand, within MPMX19_00091at 97.932 kb on + strand, within MPMX19_00091at 97.933 kb on - strand, within MPMX19_00091at 97.933 kb on - strand, within MPMX19_00091at 97.933 kb on - strand, within MPMX19_00091at 97.933 kb on - strand, within MPMX19_00091at 97.933 kb on - strand, within MPMX19_00091at 97.933 kb on - strand, within MPMX19_00091at 97.933 kb on - strand, within MPMX19_00091at 97.933 kb on - strand, within MPMX19_00091at 97.933 kb on - strand, within MPMX19_00091at 97.933 kb on - strand, within MPMX19_00091at 97.933 kb on - strand, within MPMX19_00091at 97.933 kb on - strand, within MPMX19_00091at 97.933 kb on - strand, within MPMX19_00091at 97.933 kb on - strand, within MPMX19_00091at 97.933 kb on - strand, within MPMX19_00091at 97.934 kb on + strand, within MPMX19_00091at 97.934 kb on + strand, within MPMX19_00091at 97.934 kb on + strand, within MPMX19_00091at 97.934 kb on + strand, within MPMX19_00091at 97.934 kb on + strand, within MPMX19_00091at 97.935 kb on - strand, within MPMX19_00091at 97.935 kb on - strand, within MPMX19_00091at 97.935 kb on - strand, within MPMX19_00091at 97.935 kb on - strand, within MPMX19_00091at 97.935 kb on - strand, within MPMX19_00091at 98.401 kb on + strandat 98.401 kb on + strandat 98.401 kb on + strandat 98.401 kb on + strandat 98.402 kb on - strandat 98.417 kb on + strandat 98.417 kb on + strandat 98.418 kb on - strandat 98.419 kb on + strandat 98.419 kb on + strandat 98.419 kb on + strandat 98.420 kb on - strandat 98.460 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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96,778 + MPMX19_00090 0.23 -0.5
96,778 + MPMX19_00090 0.23 -1.2
96,779 - MPMX19_00090 0.23 -2.4
96,779 - MPMX19_00090 0.23 -0.8
96,779 - MPMX19_00090 0.23 +0.8
96,787 + MPMX19_00090 0.24 +0.2
96,787 + MPMX19_00090 0.24 -0.0
96,787 + MPMX19_00090 0.24 +0.8
96,787 + MPMX19_00090 0.24 -1.4
96,787 + MPMX19_00090 0.24 -0.4
96,787 + MPMX19_00090 0.24 -0.7
96,787 + MPMX19_00090 0.24 -0.4
96,787 + MPMX19_00090 0.24 -1.5
96,787 + MPMX19_00090 0.24 +0.7
96,788 - MPMX19_00090 0.24 -0.9
96,788 - MPMX19_00090 0.24 -0.3
96,788 - MPMX19_00090 0.24 -0.2
96,788 - MPMX19_00090 0.24 -1.5
96,788 - MPMX19_00090 0.24 -0.9
96,788 - MPMX19_00090 0.24 +0.1
96,788 - MPMX19_00090 0.24 -0.4
96,788 - MPMX19_00090 0.24 -0.2
96,788 - MPMX19_00090 0.24 -1.2
96,788 - MPMX19_00090 0.24 +0.2
96,788 - MPMX19_00090 0.24 -1.6
96,829 + MPMX19_00090 0.28 -0.8
96,829 + MPMX19_00090 0.28 +0.8
96,829 + MPMX19_00090 0.28 -0.4
96,829 + MPMX19_00090 0.28 +0.1
96,829 + MPMX19_00090 0.28 -1.0
96,829 + MPMX19_00090 0.28 -0.6
96,829 + MPMX19_00090 0.28 -0.7
96,829 + MPMX19_00090 0.28 -1.3
96,830 - MPMX19_00090 0.28 +1.0
96,830 - MPMX19_00090 0.28 +0.2
96,830 - MPMX19_00090 0.28 -1.3
96,830 - MPMX19_00090 0.28 +0.0
96,830 - MPMX19_00090 0.28 +1.0
96,830 - MPMX19_00090 0.28 -1.5
96,830 - MPMX19_00090 0.28 +0.1
96,830 - MPMX19_00090 0.28 -1.2
96,991 + MPMX19_00090 0.42 +0.0
96,991 + MPMX19_00090 0.42 +2.2
96,992 - MPMX19_00090 0.43 -0.4
96,992 - MPMX19_00090 0.43 -1.6
96,992 - MPMX19_00090 0.43 +0.2
96,992 - MPMX19_00090 0.43 -1.3
96,992 - MPMX19_00090 0.43 -0.4
97,193 + MPMX19_00090 0.61 +0.6
97,194 - MPMX19_00090 0.61 -0.0
97,194 - MPMX19_00090 0.61 -0.2
97,246 + MPMX19_00090 0.66 -0.2
97,246 + MPMX19_00090 0.66 -0.1
97,247 - MPMX19_00090 0.66 -1.5
97,247 - MPMX19_00090 0.66 -0.7
97,319 + MPMX19_00090 0.73 -0.6
97,319 + MPMX19_00090 0.73 -0.6
97,319 + MPMX19_00090 0.73 +0.1
97,319 + MPMX19_00090 0.73 +0.9
97,327 + MPMX19_00090 0.73 -0.3
97,327 + MPMX19_00090 0.73 +0.3
97,327 + MPMX19_00090 0.73 -1.3
97,328 - MPMX19_00090 0.73 -1.0
97,328 - MPMX19_00090 0.73 -0.2
97,328 - MPMX19_00090 0.73 -1.5
97,450 + MPMX19_00090 0.85 -0.2
97,450 + MPMX19_00090 0.85 -0.6
97,451 - MPMX19_00090 0.85 +0.3
97,451 - MPMX19_00090 0.85 -0.6
97,451 - MPMX19_00090 0.85 -0.8
97,451 - MPMX19_00090 0.85 -1.6
97,451 - MPMX19_00090 0.85 +0.6
97,451 - MPMX19_00090 0.85 -0.8
97,451 - MPMX19_00090 0.85 -0.4
97,451 - MPMX19_00090 0.85 -0.4
97,490 - MPMX19_00090 0.88 +0.0
97,490 - MPMX19_00090 0.88 -1.1
97,513 + -0.9
97,513 + +1.8
97,513 + +0.2
97,513 + -1.4
97,513 + +0.3
97,513 + -0.6
97,514 - -0.2
97,514 - -1.3
97,514 - +0.3
97,514 - +0.8
97,514 - -0.8
97,672 + -0.9
97,672 + -1.7
97,672 + +0.4
97,672 + -0.6
97,672 + +0.3
97,672 + +0.1
97,673 - -1.7
97,673 - -1.2
97,673 - -2.0
97,673 - +0.3
97,673 - -0.4
97,673 - -1.0
97,673 - +0.2
97,673 - -0.3
97,673 - +1.0
97,673 - -1.0
97,685 + -1.2
97,685 + -0.6
97,685 + +0.3
97,685 + +0.4
97,685 + -0.2
97,685 + -0.2
97,686 - -1.8
97,686 - -0.6
97,686 - -0.0
97,686 - -1.7
97,932 + MPMX19_00091 0.40 +0.6
97,932 + MPMX19_00091 0.40 -1.0
97,932 + MPMX19_00091 0.40 +0.2
97,932 + MPMX19_00091 0.40 -0.1
97,932 + MPMX19_00091 0.40 -1.3
97,932 + MPMX19_00091 0.40 -1.1
97,932 + MPMX19_00091 0.40 -1.5
97,932 + MPMX19_00091 0.40 -1.4
97,932 + MPMX19_00091 0.40 -0.7
97,932 + MPMX19_00091 0.40 -0.4
97,932 + MPMX19_00091 0.40 +0.4
97,932 + MPMX19_00091 0.40 -1.9
97,932 + MPMX19_00091 0.40 -1.2
97,932 + MPMX19_00091 0.40 +0.2
97,932 + MPMX19_00091 0.40 +0.6
97,932 + MPMX19_00091 0.40 -0.6
97,932 + MPMX19_00091 0.40 -1.9
97,932 + MPMX19_00091 0.40 -1.0
97,932 + MPMX19_00091 0.40 +0.2
97,932 + MPMX19_00091 0.40 -0.5
97,932 + MPMX19_00091 0.40 -0.2
97,932 + MPMX19_00091 0.40 -0.5
97,932 + MPMX19_00091 0.40 -0.4
97,932 + MPMX19_00091 0.40 +0.6
97,933 - MPMX19_00091 0.40 -0.8
97,933 - MPMX19_00091 0.40 -0.1
97,933 - MPMX19_00091 0.40 -0.7
97,933 - MPMX19_00091 0.40 -2.2
97,933 - MPMX19_00091 0.40 -1.5
97,933 - MPMX19_00091 0.40 -0.9
97,933 - MPMX19_00091 0.40 -0.3
97,933 - MPMX19_00091 0.40 -0.2
97,933 - MPMX19_00091 0.40 +0.1
97,933 - MPMX19_00091 0.40 -0.7
97,933 - MPMX19_00091 0.40 -1.6
97,933 - MPMX19_00091 0.40 -0.8
97,933 - MPMX19_00091 0.40 -1.3
97,933 - MPMX19_00091 0.40 -0.5
97,933 - MPMX19_00091 0.40 -0.4
97,934 + MPMX19_00091 0.41 +0.3
97,934 + MPMX19_00091 0.41 +1.4
97,934 + MPMX19_00091 0.41 +0.8
97,934 + MPMX19_00091 0.41 -1.9
97,934 + MPMX19_00091 0.41 -0.0
97,935 - MPMX19_00091 0.41 -0.8
97,935 - MPMX19_00091 0.41 -1.0
97,935 - MPMX19_00091 0.41 +0.0
97,935 - MPMX19_00091 0.41 -0.7
97,935 - MPMX19_00091 0.41 -1.4
98,401 + -0.9
98,401 + -0.3
98,401 + +0.8
98,401 + -0.8
98,402 - -0.9
98,417 + -0.6
98,417 + +0.4
98,418 - +0.6
98,419 + +0.1
98,419 + -0.5
98,419 + -1.6
98,420 - -0.6
98,460 - -0.6

Or see this region's nucleotide sequence