Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00047

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00045 and MPMX19_00046 are separated by 150 nucleotidesMPMX19_00046 and MPMX19_00047 are separated by 238 nucleotidesMPMX19_00047 and MPMX19_00048 are separated by 217 nucleotides MPMX19_00045: MPMX19_00045 - Alkaline phosphatase synthesis transcriptional regulatory protein SphR, at 47,461 to 48,165 _00045 MPMX19_00046: MPMX19_00046 - hypothetical protein, at 48,316 to 48,834 _00046 MPMX19_00047: MPMX19_00047 - Riboflavin biosynthesis protein RibBA, at 49,073 to 50,419 _00047 MPMX19_00048: MPMX19_00048 - hypothetical protein, at 50,637 to 51,605 _00048 Position (kb) 49 50 51Strain fitness (log2 ratio) -3 -2 -1 0 1at 48.172 kb on + strandat 48.172 kb on + strandat 48.172 kb on + strandat 48.172 kb on + strandat 48.172 kb on + strandat 48.173 kb on - strandat 48.173 kb on - strandat 48.173 kb on - strandat 48.173 kb on - strandat 48.173 kb on - strandat 48.173 kb on - strandat 48.173 kb on - strandat 48.173 kb on - strandat 48.173 kb on - strandat 48.173 kb on - strandat 48.173 kb on - strandat 48.246 kb on + strandat 48.246 kb on + strandat 48.246 kb on + strandat 48.246 kb on + strandat 48.246 kb on + strandat 48.247 kb on - strandat 48.247 kb on - strandat 48.247 kb on - strandat 48.247 kb on - strandat 48.247 kb on - strandat 48.247 kb on - strandat 48.247 kb on - strandat 48.247 kb on - strandat 48.247 kb on - strandat 48.249 kb on + strandat 48.249 kb on + strandat 48.249 kb on + strandat 48.249 kb on + strandat 48.249 kb on + strandat 48.249 kb on + strandat 48.249 kb on + strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.755 kb on + strand, within MPMX19_00046at 48.755 kb on + strand, within MPMX19_00046at 48.755 kb on + strand, within MPMX19_00046at 48.756 kb on - strand, within MPMX19_00046at 48.756 kb on - strand, within MPMX19_00046at 48.875 kb on + strandat 48.875 kb on + strandat 48.875 kb on + strandat 48.875 kb on + strandat 48.875 kb on + strandat 48.875 kb on + strandat 48.876 kb on - strandat 48.876 kb on - strandat 48.876 kb on - strandat 48.876 kb on - strandat 50.490 kb on + strandat 50.490 kb on + strandat 50.490 kb on + strandat 50.491 kb on - strandat 50.491 kb on - strandat 50.491 kb on - strandat 50.601 kb on + strandat 50.601 kb on + strandat 50.601 kb on + strandat 50.601 kb on + strandat 50.602 kb on - strandat 50.602 kb on - strandat 50.602 kb on - strandat 50.602 kb on - strandat 50.823 kb on + strand, within MPMX19_00048at 50.823 kb on + strand, within MPMX19_00048at 50.823 kb on + strand, within MPMX19_00048at 50.824 kb on - strand, within MPMX19_00048at 50.824 kb on - strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 51.339 kb on + strand, within MPMX19_00048at 51.340 kb on - strand, within MPMX19_00048at 51.340 kb on - strand, within MPMX19_00048

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
48,172 + +0.2
48,172 + +0.4
48,172 + +0.2
48,172 + -0.0
48,172 + +0.8
48,173 - +0.1
48,173 - +0.7
48,173 - -2.5
48,173 - -1.5
48,173 - -1.6
48,173 - +0.5
48,173 - -0.2
48,173 - +0.2
48,173 - -0.0
48,173 - -0.2
48,173 - +0.2
48,246 + -0.3
48,246 + -0.8
48,246 + +0.2
48,246 + -1.3
48,246 + -0.6
48,247 - -0.7
48,247 - -1.1
48,247 - -0.6
48,247 - +0.7
48,247 - -0.7
48,247 - +0.7
48,247 - +0.4
48,247 - -0.4
48,247 - -0.8
48,249 + -0.4
48,249 + -0.0
48,249 + +0.2
48,249 + -1.6
48,249 + +0.6
48,249 + +0.2
48,249 + +0.9
48,250 - -1.3
48,250 - -1.9
48,250 - -0.5
48,250 - +1.6
48,250 - -1.4
48,250 - -1.7
48,250 - -0.8
48,250 - -0.6
48,250 - -0.4
48,250 - -0.5
48,250 - -1.3
48,250 - +0.8
48,250 - -0.5
48,250 - +0.6
48,250 - -1.9
48,250 - -0.4
48,250 - -0.2
48,250 - +0.8
48,250 - +0.8
48,250 - +0.6
48,250 - -1.7
48,250 - +0.2
48,250 - -0.3
48,250 - -0.0
48,250 - +0.2
48,250 - +0.6
48,250 - -0.8
48,250 - -0.4
48,250 - -0.8
48,250 - -0.6
48,250 - -1.2
48,755 + MPMX19_00046 0.85 -0.0
48,755 + MPMX19_00046 0.85 -0.8
48,755 + MPMX19_00046 0.85 -1.3
48,756 - MPMX19_00046 0.85 +0.9
48,756 - MPMX19_00046 0.85 -2.0
48,875 + +0.9
48,875 + -3.4
48,875 + +0.5
48,875 + -1.4
48,875 + +1.2
48,875 + -0.3
48,876 - -0.3
48,876 - +0.9
48,876 - -2.1
48,876 - -2.1
50,490 + +0.7
50,490 + -0.8
50,490 + -0.0
50,491 - -1.5
50,491 - -0.2
50,491 - +0.6
50,601 + -0.5
50,601 + -2.4
50,601 + +0.1
50,601 + -1.2
50,602 - -0.2
50,602 - -1.6
50,602 - -1.7
50,602 - -1.5
50,823 + MPMX19_00048 0.19 -0.1
50,823 + MPMX19_00048 0.19 -1.3
50,823 + MPMX19_00048 0.19 -1.6
50,824 - MPMX19_00048 0.19 -0.9
50,824 - MPMX19_00048 0.19 -0.1
50,883 + MPMX19_00048 0.25 -1.5
50,883 + MPMX19_00048 0.25 -0.5
50,883 + MPMX19_00048 0.25 -2.3
50,883 + MPMX19_00048 0.25 -1.4
50,883 + MPMX19_00048 0.25 -0.3
50,883 + MPMX19_00048 0.25 -0.1
50,883 + MPMX19_00048 0.25 -0.0
50,883 + MPMX19_00048 0.25 -2.4
50,883 + MPMX19_00048 0.25 -1.3
50,883 + MPMX19_00048 0.25 +0.1
50,883 + MPMX19_00048 0.25 -0.7
50,884 - MPMX19_00048 0.25 -0.6
50,884 - MPMX19_00048 0.25 +0.6
50,884 - MPMX19_00048 0.25 -2.0
50,884 - MPMX19_00048 0.25 -1.3
50,884 - MPMX19_00048 0.25 -0.7
50,884 - MPMX19_00048 0.25 -1.0
50,884 - MPMX19_00048 0.25 +0.8
50,884 - MPMX19_00048 0.25 -0.7
50,884 - MPMX19_00048 0.25 -2.1
50,884 - MPMX19_00048 0.25 -0.3
50,884 - MPMX19_00048 0.25 -1.1
50,884 - MPMX19_00048 0.25 +0.0
50,884 - MPMX19_00048 0.25 -0.3
51,339 + MPMX19_00048 0.72 -1.5
51,340 - MPMX19_00048 0.73 -0.8
51,340 - MPMX19_00048 0.73 -0.4

Or see this region's nucleotide sequence