Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00043

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00042 and MPMX19_00043 are separated by 197 nucleotidesMPMX19_00043 and MPMX19_00044 are separated by 218 nucleotides MPMX19_00042: MPMX19_00042 - hypothetical protein, at 44,480 to 45,292 _00042 MPMX19_00043: MPMX19_00043 - Ribonuclease BN, at 45,490 to 46,410 _00043 MPMX19_00044: MPMX19_00044 - hypothetical protein, at 46,629 to 47,423 _00044 Position (kb) 45 46 47Strain fitness (log2 ratio) -2 -1 0 1 2at 44.784 kb on + strand, within MPMX19_00042at 44.784 kb on + strand, within MPMX19_00042at 44.784 kb on + strand, within MPMX19_00042at 44.784 kb on + strand, within MPMX19_00042at 44.784 kb on + strand, within MPMX19_00042at 44.784 kb on + strand, within MPMX19_00042at 44.784 kb on + strand, within MPMX19_00042at 44.784 kb on + strand, within MPMX19_00042at 44.785 kb on - strand, within MPMX19_00042at 44.785 kb on - strand, within MPMX19_00042at 44.785 kb on - strand, within MPMX19_00042at 44.785 kb on - strand, within MPMX19_00042at 44.785 kb on - strand, within MPMX19_00042at 44.785 kb on - strand, within MPMX19_00042at 44.785 kb on - strand, within MPMX19_00042at 44.785 kb on - strand, within MPMX19_00042at 44.785 kb on - strand, within MPMX19_00042at 44.785 kb on - strand, within MPMX19_00042at 44.785 kb on - strand, within MPMX19_00042at 44.785 kb on - strand, within MPMX19_00042at 44.785 kb on - strand, within MPMX19_00042at 44.785 kb on - strand, within MPMX19_00042at 44.785 kb on - strand, within MPMX19_00042at 44.794 kb on - strand, within MPMX19_00042at 44.886 kb on + strand, within MPMX19_00042at 44.886 kb on + strand, within MPMX19_00042at 44.886 kb on + strand, within MPMX19_00042at 44.886 kb on + strand, within MPMX19_00042at 44.886 kb on + strand, within MPMX19_00042at 44.886 kb on + strand, within MPMX19_00042at 44.886 kb on + strand, within MPMX19_00042at 44.886 kb on + strand, within MPMX19_00042at 44.886 kb on + strand, within MPMX19_00042at 44.886 kb on + strand, within MPMX19_00042at 44.886 kb on + strand, within MPMX19_00042at 44.886 kb on + strand, within MPMX19_00042at 44.886 kb on + strand, within MPMX19_00042at 44.887 kb on - strand, within MPMX19_00042at 44.887 kb on - strand, within MPMX19_00042at 44.887 kb on - strand, within MPMX19_00042at 44.887 kb on - strand, within MPMX19_00042at 44.887 kb on - strand, within MPMX19_00042at 44.887 kb on - strand, within MPMX19_00042at 44.887 kb on - strand, within MPMX19_00042at 45.105 kb on + strand, within MPMX19_00042at 45.105 kb on + strand, within MPMX19_00042at 45.126 kb on + strand, within MPMX19_00042at 45.126 kb on + strand, within MPMX19_00042at 45.126 kb on + strand, within MPMX19_00042at 45.126 kb on + strand, within MPMX19_00042at 45.126 kb on + strand, within MPMX19_00042at 45.126 kb on + strand, within MPMX19_00042at 45.126 kb on + strand, within MPMX19_00042at 45.126 kb on + strand, within MPMX19_00042at 45.127 kb on - strand, within MPMX19_00042at 45.127 kb on - strand, within MPMX19_00042at 45.127 kb on - strand, within MPMX19_00042at 45.127 kb on - strand, within MPMX19_00042at 45.127 kb on - strand, within MPMX19_00042at 45.127 kb on - strand, within MPMX19_00042at 45.127 kb on - strand, within MPMX19_00042at 45.127 kb on - strand, within MPMX19_00042at 45.364 kb on + strandat 45.364 kb on + strandat 45.364 kb on + strandat 45.364 kb on + strandat 45.364 kb on + strandat 45.365 kb on - strandat 45.414 kb on + strandat 45.414 kb on + strandat 45.415 kb on - strandat 45.415 kb on - strandat 45.415 kb on - strandat 45.415 kb on - strandat 45.491 kb on + strandat 45.492 kb on - strandat 45.492 kb on - strandat 45.492 kb on - strandat 45.492 kb on - strandat 45.690 kb on - strand, within MPMX19_00043at 45.704 kb on + strand, within MPMX19_00043at 45.704 kb on + strand, within MPMX19_00043at 45.704 kb on + strand, within MPMX19_00043at 45.704 kb on + strand, within MPMX19_00043at 45.704 kb on + strand, within MPMX19_00043at 45.704 kb on + strand, within MPMX19_00043at 45.704 kb on + strand, within MPMX19_00043at 45.704 kb on + strand, within MPMX19_00043at 45.704 kb on + strand, within MPMX19_00043at 45.704 kb on + strand, within MPMX19_00043at 45.704 kb on + strand, within MPMX19_00043at 45.704 kb on + strand, within MPMX19_00043at 45.704 kb on + strand, within MPMX19_00043at 45.704 kb on + strand, within MPMX19_00043at 45.704 kb on + strand, within MPMX19_00043at 45.704 kb on + strand, within MPMX19_00043at 45.705 kb on - strand, within MPMX19_00043at 45.705 kb on - strand, within MPMX19_00043at 45.705 kb on - strand, within MPMX19_00043at 45.705 kb on - strand, within MPMX19_00043at 45.705 kb on - strand, within MPMX19_00043at 45.705 kb on - strand, within MPMX19_00043at 45.705 kb on - strand, within MPMX19_00043at 45.705 kb on - strand, within MPMX19_00043at 45.705 kb on - strand, within MPMX19_00043at 45.705 kb on - strand, within MPMX19_00043at 45.705 kb on - strand, within MPMX19_00043at 45.705 kb on - strand, within MPMX19_00043at 45.705 kb on - strand, within MPMX19_00043at 45.705 kb on - strand, within MPMX19_00043at 45.705 kb on - strand, within MPMX19_00043at 45.705 kb on - strand, within MPMX19_00043at 45.705 kb on - strand, within MPMX19_00043at 45.716 kb on + strand, within MPMX19_00043at 45.716 kb on + strand, within MPMX19_00043at 45.716 kb on + strand, within MPMX19_00043at 45.716 kb on + strand, within MPMX19_00043at 45.716 kb on + strand, within MPMX19_00043at 45.716 kb on + strand, within MPMX19_00043at 45.716 kb on + strand, within MPMX19_00043at 45.716 kb on + strand, within MPMX19_00043at 45.716 kb on + strand, within MPMX19_00043at 45.716 kb on + strand, within MPMX19_00043at 45.716 kb on + strand, within MPMX19_00043at 45.717 kb on - strand, within MPMX19_00043at 45.717 kb on - strand, within MPMX19_00043at 45.717 kb on - strand, within MPMX19_00043at 45.717 kb on - strand, within MPMX19_00043at 45.717 kb on - strand, within MPMX19_00043at 45.717 kb on - strand, within MPMX19_00043at 46.244 kb on + strand, within MPMX19_00043at 46.244 kb on + strand, within MPMX19_00043at 46.244 kb on + strand, within MPMX19_00043at 46.245 kb on - strand, within MPMX19_00043at 46.245 kb on - strand, within MPMX19_00043at 46.275 kb on + strand, within MPMX19_00043at 46.275 kb on + strand, within MPMX19_00043at 46.276 kb on - strand, within MPMX19_00043at 46.276 kb on - strand, within MPMX19_00043at 46.276 kb on - strand, within MPMX19_00043at 46.415 kb on - strandat 46.417 kb on + strandat 46.417 kb on + strandat 46.418 kb on - strandat 46.418 kb on - strandat 46.418 kb on - strandat 46.418 kb on - strandat 46.418 kb on - strandat 46.418 kb on - strandat 46.418 kb on - strandat 46.418 kb on - strandat 46.418 kb on - strandat 46.418 kb on - strandat 46.418 kb on - strandat 46.418 kb on - strandat 46.468 kb on + strandat 46.506 kb on - strandat 46.530 kb on + strandat 46.530 kb on + strandat 46.530 kb on + strandat 46.530 kb on + strandat 46.530 kb on + strandat 46.530 kb on + strandat 46.530 kb on + strandat 46.530 kb on + strandat 46.530 kb on + strandat 46.531 kb on - strandat 46.531 kb on - strandat 46.540 kb on + strandat 46.540 kb on + strandat 46.540 kb on + strandat 46.540 kb on + strandat 46.540 kb on + strandat 46.540 kb on + strandat 46.541 kb on - strandat 46.541 kb on - strandat 46.541 kb on - strandat 46.541 kb on - strandat 46.541 kb on - strandat 46.541 kb on - strandat 46.541 kb on - strandat 46.541 kb on - strandat 47.304 kb on + strand, within MPMX19_00044at 47.304 kb on + strand, within MPMX19_00044at 47.304 kb on + strand, within MPMX19_00044at 47.305 kb on - strand, within MPMX19_00044at 47.305 kb on - strand, within MPMX19_00044at 47.305 kb on - strand, within MPMX19_00044at 47.305 kb on - strand, within MPMX19_00044at 47.305 kb on - strand, within MPMX19_00044at 47.305 kb on - strand, within MPMX19_00044

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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44,784 + MPMX19_00042 0.37 -1.0
44,784 + MPMX19_00042 0.37 +0.3
44,784 + MPMX19_00042 0.37 +0.2
44,784 + MPMX19_00042 0.37 -1.4
44,784 + MPMX19_00042 0.37 +1.3
44,784 + MPMX19_00042 0.37 +0.1
44,784 + MPMX19_00042 0.37 +0.2
44,784 + MPMX19_00042 0.37 -1.3
44,785 - MPMX19_00042 0.38 +0.9
44,785 - MPMX19_00042 0.38 +0.4
44,785 - MPMX19_00042 0.38 +0.2
44,785 - MPMX19_00042 0.38 -0.2
44,785 - MPMX19_00042 0.38 -1.2
44,785 - MPMX19_00042 0.38 +0.6
44,785 - MPMX19_00042 0.38 -0.2
44,785 - MPMX19_00042 0.38 -0.2
44,785 - MPMX19_00042 0.38 -1.8
44,785 - MPMX19_00042 0.38 -0.4
44,785 - MPMX19_00042 0.38 -1.0
44,785 - MPMX19_00042 0.38 -0.1
44,785 - MPMX19_00042 0.38 -0.4
44,785 - MPMX19_00042 0.38 -1.4
44,785 - MPMX19_00042 0.38 -0.1
44,794 - MPMX19_00042 0.39 +0.2
44,886 + MPMX19_00042 0.50 -1.3
44,886 + MPMX19_00042 0.50 +2.2
44,886 + MPMX19_00042 0.50 -0.3
44,886 + MPMX19_00042 0.50 -0.9
44,886 + MPMX19_00042 0.50 -0.2
44,886 + MPMX19_00042 0.50 -0.4
44,886 + MPMX19_00042 0.50 +0.2
44,886 + MPMX19_00042 0.50 -0.0
44,886 + MPMX19_00042 0.50 +0.6
44,886 + MPMX19_00042 0.50 -1.2
44,886 + MPMX19_00042 0.50 +0.1
44,886 + MPMX19_00042 0.50 +2.2
44,886 + MPMX19_00042 0.50 -0.4
44,887 - MPMX19_00042 0.50 -1.8
44,887 - MPMX19_00042 0.50 -0.9
44,887 - MPMX19_00042 0.50 -0.8
44,887 - MPMX19_00042 0.50 +0.2
44,887 - MPMX19_00042 0.50 -0.6
44,887 - MPMX19_00042 0.50 -0.6
44,887 - MPMX19_00042 0.50 -1.8
45,105 + MPMX19_00042 0.77 +0.9
45,105 + MPMX19_00042 0.77 -0.6
45,126 + MPMX19_00042 0.79 -1.0
45,126 + MPMX19_00042 0.79 -0.6
45,126 + MPMX19_00042 0.79 -1.8
45,126 + MPMX19_00042 0.79 +0.8
45,126 + MPMX19_00042 0.79 -0.6
45,126 + MPMX19_00042 0.79 -1.2
45,126 + MPMX19_00042 0.79 +0.4
45,126 + MPMX19_00042 0.79 -0.2
45,127 - MPMX19_00042 0.80 -1.3
45,127 - MPMX19_00042 0.80 +0.9
45,127 - MPMX19_00042 0.80 -0.0
45,127 - MPMX19_00042 0.80 -1.3
45,127 - MPMX19_00042 0.80 -1.3
45,127 - MPMX19_00042 0.80 -1.1
45,127 - MPMX19_00042 0.80 -0.1
45,127 - MPMX19_00042 0.80 -0.4
45,364 + -0.8
45,364 + -1.5
45,364 + +0.6
45,364 + +0.6
45,364 + +0.4
45,365 - +0.8
45,414 + +1.4
45,414 + -2.2
45,415 - -1.2
45,415 - +0.5
45,415 - -0.4
45,415 - -0.6
45,491 + +0.9
45,492 - +1.2
45,492 - +1.6
45,492 - +0.6
45,492 - +0.4
45,690 - MPMX19_00043 0.22 -0.6
45,704 + MPMX19_00043 0.23 -1.6
45,704 + MPMX19_00043 0.23 +0.9
45,704 + MPMX19_00043 0.23 +0.3
45,704 + MPMX19_00043 0.23 +1.5
45,704 + MPMX19_00043 0.23 -1.4
45,704 + MPMX19_00043 0.23 +0.2
45,704 + MPMX19_00043 0.23 +0.8
45,704 + MPMX19_00043 0.23 +0.2
45,704 + MPMX19_00043 0.23 -1.1
45,704 + MPMX19_00043 0.23 +1.2
45,704 + MPMX19_00043 0.23 +0.5
45,704 + MPMX19_00043 0.23 +0.4
45,704 + MPMX19_00043 0.23 -1.3
45,704 + MPMX19_00043 0.23 -0.8
45,704 + MPMX19_00043 0.23 -1.4
45,704 + MPMX19_00043 0.23 -0.4
45,705 - MPMX19_00043 0.23 +0.1
45,705 - MPMX19_00043 0.23 -1.5
45,705 - MPMX19_00043 0.23 -2.0
45,705 - MPMX19_00043 0.23 -0.5
45,705 - MPMX19_00043 0.23 -0.6
45,705 - MPMX19_00043 0.23 -0.8
45,705 - MPMX19_00043 0.23 -1.2
45,705 - MPMX19_00043 0.23 +1.2
45,705 - MPMX19_00043 0.23 +1.6
45,705 - MPMX19_00043 0.23 -1.1
45,705 - MPMX19_00043 0.23 -0.2
45,705 - MPMX19_00043 0.23 +1.4
45,705 - MPMX19_00043 0.23 -1.8
45,705 - MPMX19_00043 0.23 +1.2
45,705 - MPMX19_00043 0.23 +0.2
45,705 - MPMX19_00043 0.23 -0.5
45,705 - MPMX19_00043 0.23 +0.2
45,716 + MPMX19_00043 0.25 +0.2
45,716 + MPMX19_00043 0.25 -1.1
45,716 + MPMX19_00043 0.25 -0.2
45,716 + MPMX19_00043 0.25 +1.0
45,716 + MPMX19_00043 0.25 -0.8
45,716 + MPMX19_00043 0.25 -0.1
45,716 + MPMX19_00043 0.25 +0.6
45,716 + MPMX19_00043 0.25 -0.1
45,716 + MPMX19_00043 0.25 -0.4
45,716 + MPMX19_00043 0.25 -0.2
45,716 + MPMX19_00043 0.25 +0.8
45,717 - MPMX19_00043 0.25 -1.4
45,717 - MPMX19_00043 0.25 +0.6
45,717 - MPMX19_00043 0.25 +0.9
45,717 - MPMX19_00043 0.25 -1.5
45,717 - MPMX19_00043 0.25 +0.6
45,717 - MPMX19_00043 0.25 -0.5
46,244 + MPMX19_00043 0.82 -0.6
46,244 + MPMX19_00043 0.82 -1.3
46,244 + MPMX19_00043 0.82 -0.9
46,245 - MPMX19_00043 0.82 -1.2
46,245 - MPMX19_00043 0.82 -1.0
46,275 + MPMX19_00043 0.85 +1.3
46,275 + MPMX19_00043 0.85 +0.7
46,276 - MPMX19_00043 0.85 +1.6
46,276 - MPMX19_00043 0.85 -0.2
46,276 - MPMX19_00043 0.85 -0.9
46,415 - +0.4
46,417 + -1.0
46,417 + +1.1
46,418 - -0.8
46,418 - -0.4
46,418 - +1.2
46,418 - +0.1
46,418 - -1.0
46,418 - +0.1
46,418 - +1.3
46,418 - -1.0
46,418 - +0.7
46,418 - -1.8
46,418 - -0.4
46,418 - -0.6
46,468 + -0.0
46,506 - +1.7
46,530 + -1.5
46,530 + -0.1
46,530 + -0.6
46,530 + -1.2
46,530 + -0.1
46,530 + -0.4
46,530 + -1.4
46,530 + -0.4
46,530 + +1.0
46,531 - -0.3
46,531 - -1.2
46,540 + +0.6
46,540 + -0.9
46,540 + -1.9
46,540 + +0.2
46,540 + +0.8
46,540 + +0.3
46,541 - -0.8
46,541 - -1.3
46,541 - -0.2
46,541 - -0.8
46,541 - +0.6
46,541 - -0.9
46,541 - -0.2
46,541 - -1.6
47,304 + MPMX19_00044 0.85 -0.6
47,304 + MPMX19_00044 0.85 -0.6
47,304 + MPMX19_00044 0.85 -0.4
47,305 - MPMX19_00044 0.85 -0.6
47,305 - MPMX19_00044 0.85 +1.2
47,305 - MPMX19_00044 0.85 -0.8
47,305 - MPMX19_00044 0.85 -1.1
47,305 - MPMX19_00044 0.85 -0.9
47,305 - MPMX19_00044 0.85 -2.4

Or see this region's nucleotide sequence