Strain Fitness in Pseudomonas sp. DMC3 around GFF798

Experiment: D-Glucose and D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF796 and GFF797 are separated by 98 nucleotidesGFF797 and GFF798 are separated by 41 nucleotidesGFF798 and GFF799 are separated by 69 nucleotides GFF796 - Cell division protein DedD, at 155,651 to 156,313 GFF796 GFF797 - hypothetical protein, at 156,412 to 156,972 GFF797 GFF798 - Amidophosphoribosyltransferase, at 157,014 to 158,519 GFF798 GFF799 - O-succinylhomoserine sulfhydrylase, at 158,589 to 159,800 GFF799 Position (kb) 157 158 159Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 156.161 kb on + strand, within GFF796at 156.161 kb on + strand, within GFF796at 156.161 kb on + strand, within GFF796at 156.161 kb on + strand, within GFF796at 156.161 kb on + strand, within GFF796at 156.162 kb on - strand, within GFF796at 156.162 kb on - strand, within GFF796at 156.162 kb on - strand, within GFF796at 156.163 kb on + strand, within GFF796at 156.163 kb on + strand, within GFF796at 156.163 kb on + strand, within GFF796at 156.164 kb on - strand, within GFF796at 156.164 kb on - strand, within GFF796at 156.164 kb on - strand, within GFF796at 156.164 kb on - strand, within GFF796at 156.164 kb on - strand, within GFF796at 156.164 kb on - strand, within GFF796at 156.170 kb on + strand, within GFF796at 156.319 kb on - strandat 156.376 kb on + strandat 156.401 kb on + strandat 156.402 kb on - strandat 156.402 kb on - strandat 156.580 kb on + strand, within GFF797at 156.580 kb on + strand, within GFF797at 156.664 kb on + strand, within GFF797at 156.664 kb on + strand, within GFF797at 156.664 kb on + strand, within GFF797at 156.664 kb on + strand, within GFF797at 156.665 kb on - strand, within GFF797at 156.665 kb on - strand, within GFF797at 156.914 kb on + strand, within GFF797at 156.995 kb on + strandat 156.996 kb on - strandat 156.996 kb on - strandat 156.996 kb on - strandat 156.996 kb on - strandat 156.999 kb on + strandat 157.041 kb on - strandat 157.041 kb on - strandat 157.041 kb on - strandat 157.065 kb on + strandat 157.065 kb on + strandat 157.065 kb on + strandat 157.065 kb on + strandat 157.113 kb on - strandat 157.279 kb on - strand, within GFF798at 157.356 kb on + strand, within GFF798at 157.356 kb on + strand, within GFF798at 157.357 kb on - strand, within GFF798at 157.357 kb on - strand, within GFF798at 157.494 kb on - strand, within GFF798at 157.513 kb on - strand, within GFF798at 157.620 kb on + strand, within GFF798at 157.621 kb on - strand, within GFF798at 157.621 kb on - strand, within GFF798at 157.621 kb on - strand, within GFF798at 157.699 kb on + strand, within GFF798at 157.700 kb on - strand, within GFF798at 157.701 kb on + strand, within GFF798at 157.701 kb on + strand, within GFF798at 157.701 kb on + strand, within GFF798at 157.701 kb on + strand, within GFF798at 157.701 kb on + strand, within GFF798at 157.701 kb on + strand, within GFF798at 157.701 kb on + strand, within GFF798at 157.701 kb on + strand, within GFF798at 157.702 kb on - strand, within GFF798at 157.702 kb on - strand, within GFF798at 157.824 kb on + strand, within GFF798at 157.825 kb on - strand, within GFF798at 157.995 kb on + strand, within GFF798at 157.995 kb on + strand, within GFF798at 157.996 kb on - strand, within GFF798at 157.996 kb on - strand, within GFF798at 158.181 kb on + strand, within GFF798at 158.181 kb on + strand, within GFF798at 158.223 kb on + strand, within GFF798at 158.223 kb on + strand, within GFF798at 158.223 kb on + strand, within GFF798at 158.224 kb on - strand, within GFF798at 158.224 kb on - strand, within GFF798at 158.224 kb on - strand, within GFF798at 158.317 kb on - strand, within GFF798at 158.317 kb on - strand, within GFF798at 158.403 kb on + strandat 158.403 kb on + strandat 158.403 kb on + strandat 158.403 kb on + strandat 158.404 kb on - strandat 158.404 kb on - strandat 158.508 kb on + strandat 158.508 kb on + strandat 158.551 kb on - strandat 158.558 kb on - strandat 158.561 kb on + strandat 158.561 kb on + strandat 158.561 kb on + strandat 158.562 kb on - strandat 158.562 kb on - strandat 158.562 kb on - strandat 158.562 kb on - strandat 158.562 kb on - strandat 158.724 kb on + strand, within GFF799at 158.725 kb on - strand, within GFF799at 158.787 kb on + strand, within GFF799at 158.797 kb on - strand, within GFF799at 158.982 kb on + strand, within GFF799at 158.983 kb on - strand, within GFF799at 158.983 kb on - strand, within GFF799at 159.012 kb on + strand, within GFF799at 159.013 kb on - strand, within GFF799at 159.478 kb on - strand, within GFF799

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
remove
156,161 + GFF796 0.77 -0.6
156,161 + GFF796 0.77 -0.1
156,161 + GFF796 0.77 -0.5
156,161 + GFF796 0.77 -0.4
156,161 + GFF796 0.77 -0.5
156,162 - GFF796 0.77 -0.1
156,162 - GFF796 0.77 -1.1
156,162 - GFF796 0.77 +0.4
156,163 + GFF796 0.77 +0.4
156,163 + GFF796 0.77 +0.6
156,163 + GFF796 0.77 +0.2
156,164 - GFF796 0.77 +0.6
156,164 - GFF796 0.77 -0.6
156,164 - GFF796 0.77 +0.2
156,164 - GFF796 0.77 -1.1
156,164 - GFF796 0.77 -0.4
156,164 - GFF796 0.77 +0.4
156,170 + GFF796 0.78 +0.1
156,319 - +1.1
156,376 + -0.5
156,401 + -1.6
156,402 - -1.7
156,402 - -1.1
156,580 + GFF797 0.30 -1.1
156,580 + GFF797 0.30 +0.8
156,664 + GFF797 0.45 -0.0
156,664 + GFF797 0.45 -2.1
156,664 + GFF797 0.45 -0.3
156,664 + GFF797 0.45 +0.0
156,665 - GFF797 0.45 -1.4
156,665 - GFF797 0.45 -2.2
156,914 + GFF797 0.89 +0.7
156,995 + -0.3
156,996 - -2.3
156,996 - -1.3
156,996 - -2.3
156,996 - -0.9
156,999 + -0.6
157,041 - -2.7
157,041 - -1.4
157,041 - -1.4
157,065 + -2.7
157,065 + -3.0
157,065 + -2.7
157,065 + -3.4
157,113 - -1.6
157,279 - GFF798 0.18 -3.7
157,356 + GFF798 0.23 -2.0
157,356 + GFF798 0.23 -2.7
157,357 - GFF798 0.23 -2.1
157,357 - GFF798 0.23 -3.7
157,494 - GFF798 0.32 -2.4
157,513 - GFF798 0.33 -2.0
157,620 + GFF798 0.40 -1.4
157,621 - GFF798 0.40 -2.5
157,621 - GFF798 0.40 -2.3
157,621 - GFF798 0.40 -2.0
157,699 + GFF798 0.45 -2.7
157,700 - GFF798 0.46 -0.6
157,701 + GFF798 0.46 -3.0
157,701 + GFF798 0.46 -1.9
157,701 + GFF798 0.46 -2.5
157,701 + GFF798 0.46 -1.2
157,701 + GFF798 0.46 -0.6
157,701 + GFF798 0.46 -1.9
157,701 + GFF798 0.46 -2.0
157,701 + GFF798 0.46 -1.1
157,702 - GFF798 0.46 -3.2
157,702 - GFF798 0.46 -4.0
157,824 + GFF798 0.54 -3.3
157,825 - GFF798 0.54 -2.7
157,995 + GFF798 0.65 -2.7
157,995 + GFF798 0.65 -2.1
157,996 - GFF798 0.65 -2.4
157,996 - GFF798 0.65 -0.6
158,181 + GFF798 0.77 -2.4
158,181 + GFF798 0.77 -0.6
158,223 + GFF798 0.80 -1.9
158,223 + GFF798 0.80 -1.4
158,223 + GFF798 0.80 -1.6
158,224 - GFF798 0.80 -2.4
158,224 - GFF798 0.80 -3.1
158,224 - GFF798 0.80 -1.7
158,317 - GFF798 0.87 -2.6
158,317 - GFF798 0.87 -0.6
158,403 + -2.0
158,403 + -2.7
158,403 + -2.3
158,403 + -1.7
158,404 - -3.7
158,404 - -1.9
158,508 + -0.1
158,508 + +1.8
158,551 - -0.4
158,558 - -0.6
158,561 + -0.3
158,561 + +0.5
158,561 + -0.4
158,562 - -0.7
158,562 - -1.7
158,562 - -0.6
158,562 - +0.8
158,562 - -0.7
158,724 + GFF799 0.11 -1.9
158,725 - GFF799 0.11 -2.1
158,787 + GFF799 0.16 -0.7
158,797 - GFF799 0.17 -2.7
158,982 + GFF799 0.32 -4.0
158,983 - GFF799 0.33 -2.8
158,983 - GFF799 0.33 -2.9
159,012 + GFF799 0.35 -3.2
159,013 - GFF799 0.35 -1.9
159,478 - GFF799 0.73 -2.9

Or see this region's nucleotide sequence