Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF782 and GFF783 overlap by 4 nucleotides
GFF782 - hypothetical protein, at 133,228 to 135,918
GFF782
GFF783 - Chaperone protein HscC, at 135,915 to 137,606
GFF783
Position (kb) 135
136
137
138 Strain fitness (log2 ratio) -2
-1
0
1
2 at 134.954 kb on + strand, within GFF782 at 135.096 kb on + strand, within GFF782 at 135.106 kb on + strand, within GFF782 at 135.106 kb on + strand, within GFF782 at 135.106 kb on + strand, within GFF782 at 135.107 kb on - strand, within GFF782 at 135.107 kb on - strand, within GFF782 at 135.107 kb on - strand, within GFF782 at 135.108 kb on + strand, within GFF782 at 135.108 kb on + strand, within GFF782 at 135.109 kb on - strand, within GFF782 at 135.109 kb on - strand, within GFF782 at 135.181 kb on + strand, within GFF782 at 135.348 kb on - strand, within GFF782 at 135.348 kb on - strand, within GFF782 at 135.348 kb on - strand, within GFF782 at 135.355 kb on + strand, within GFF782 at 135.356 kb on - strand, within GFF782 at 135.422 kb on + strand, within GFF782 at 135.444 kb on + strand, within GFF782 at 135.545 kb on + strand, within GFF782 at 135.647 kb on + strand, within GFF782 at 135.716 kb on + strand at 135.717 kb on - strand at 135.717 kb on - strand at 135.717 kb on - strand at 135.747 kb on - strand at 135.762 kb on - strand at 135.870 kb on + strand at 135.870 kb on + strand at 135.870 kb on + strand at 135.870 kb on + strand at 135.870 kb on + strand at 135.870 kb on + strand at 135.870 kb on + strand at 135.871 kb on - strand at 135.871 kb on - strand at 135.871 kb on - strand at 135.871 kb on - strand at 135.871 kb on - strand at 136.230 kb on + strand, within GFF783 at 136.230 kb on + strand, within GFF783 at 136.361 kb on - strand, within GFF783 at 136.439 kb on + strand, within GFF783 at 136.439 kb on + strand, within GFF783 at 136.439 kb on + strand, within GFF783 at 136.440 kb on - strand, within GFF783 at 136.440 kb on - strand, within GFF783 at 136.506 kb on - strand, within GFF783 at 136.508 kb on - strand, within GFF783 at 137.042 kb on - strand, within GFF783 at 137.042 kb on - strand, within GFF783 at 137.122 kb on + strand, within GFF783 at 137.225 kb on - strand, within GFF783 at 137.225 kb on - strand, within GFF783 at 137.225 kb on - strand, within GFF783 at 137.301 kb on + strand, within GFF783 at 137.302 kb on - strand, within GFF783 at 137.313 kb on + strand, within GFF783 at 137.313 kb on + strand, within GFF783 at 137.754 kb on - strand at 137.972 kb on + strand at 138.298 kb on + strand at 138.298 kb on + strand at 138.299 kb on - strand at 138.500 kb on + strand at 138.539 kb on + strand at 138.540 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 134,954 + GFF782 0.64 +0.7 135,096 + GFF782 0.69 +0.0 135,106 + GFF782 0.70 -0.4 135,106 + GFF782 0.70 +0.3 135,106 + GFF782 0.70 +0.9 135,107 - GFF782 0.70 +0.7 135,107 - GFF782 0.70 +0.0 135,107 - GFF782 0.70 +0.3 135,108 + GFF782 0.70 +0.4 135,108 + GFF782 0.70 -0.9 135,109 - GFF782 0.70 +1.2 135,109 - GFF782 0.70 +1.7 135,181 + GFF782 0.73 +0.4 135,348 - GFF782 0.79 +1.4 135,348 - GFF782 0.79 +0.4 135,348 - GFF782 0.79 +0.2 135,355 + GFF782 0.79 -1.4 135,356 - GFF782 0.79 +1.2 135,422 + GFF782 0.82 -0.1 135,444 + GFF782 0.82 -1.1 135,545 + GFF782 0.86 +2.0 135,647 + GFF782 0.90 -0.8 135,716 + +1.3 135,717 - -1.0 135,717 - -0.2 135,717 - -0.1 135,747 - +0.3 135,762 - -0.6 135,870 + +0.1 135,870 + +0.6 135,870 + +0.4 135,870 + +0.1 135,870 + +0.2 135,870 + -0.8 135,870 + +0.0 135,871 - -0.9 135,871 - -0.1 135,871 - -0.0 135,871 - -0.1 135,871 - +0.0 136,230 + GFF783 0.19 +1.1 136,230 + GFF783 0.19 -0.0 136,361 - GFF783 0.26 -0.3 136,439 + GFF783 0.31 +0.4 136,439 + GFF783 0.31 -0.0 136,439 + GFF783 0.31 +1.0 136,440 - GFF783 0.31 +0.4 136,440 - GFF783 0.31 +0.1 136,506 - GFF783 0.35 -0.8 136,508 - GFF783 0.35 -0.4 137,042 - GFF783 0.67 +0.1 137,042 - GFF783 0.67 +1.0 137,122 + GFF783 0.71 -1.0 137,225 - GFF783 0.77 +0.5 137,225 - GFF783 0.77 -0.1 137,225 - GFF783 0.77 +0.5 137,301 + GFF783 0.82 +0.1 137,302 - GFF783 0.82 +0.8 137,313 + GFF783 0.83 -0.0 137,313 + GFF783 0.83 +1.1 137,754 - -1.9 137,972 + +0.7 138,298 + -0.4 138,298 + +0.7 138,299 - -0.3 138,500 + -2.7 138,539 + -0.2 138,540 - +0.9
Or see this region's nucleotide sequence