Strain Fitness in Pseudomonas sp. DMC3 around GFF674

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF671 and GFF672 are separated by 172 nucleotidesGFF672 and GFF673 are separated by 129 nucleotidesGFF673 and GFF674 are separated by 166 nucleotidesGFF674 and GFF675 overlap by 28 nucleotides GFF671 - hypothetical protein, at 742,365 to 743,366 GFF671 GFF672 - hypothetical protein, at 743,539 to 743,763 GFF672 GFF673 - Dodecin, at 743,893 to 744,108 GFF673 GFF674 - putative protein YqjD, at 744,275 to 744,601 GFF674 GFF675 - HTH-type transcriptional regulator TrpI, at 744,574 to 745,491 GFF675 Position (kb) 744 745Strain fitness (log2 ratio) -2 -1 0 1at 743.307 kb on + strandat 743.307 kb on + strandat 743.308 kb on - strandat 743.308 kb on - strandat 743.308 kb on - strandat 743.334 kb on + strandat 743.335 kb on - strandat 743.335 kb on - strandat 743.364 kb on + strandat 743.380 kb on + strandat 743.380 kb on + strandat 743.380 kb on + strandat 743.380 kb on + strandat 743.380 kb on + strandat 743.380 kb on + strandat 743.380 kb on + strandat 743.380 kb on + strandat 743.380 kb on + strandat 743.380 kb on + strandat 743.380 kb on + strandat 743.380 kb on + strandat 743.380 kb on + strandat 743.380 kb on + strandat 743.381 kb on - strandat 743.381 kb on - strandat 743.381 kb on - strandat 743.381 kb on - strandat 743.381 kb on - strandat 743.381 kb on - strandat 743.381 kb on - strandat 743.381 kb on - strandat 743.381 kb on - strandat 743.381 kb on - strandat 743.381 kb on - strandat 743.381 kb on - strandat 743.430 kb on + strandat 743.430 kb on + strandat 743.430 kb on + strandat 743.430 kb on + strandat 743.431 kb on - strandat 743.431 kb on - strandat 743.525 kb on + strandat 743.525 kb on + strandat 743.552 kb on + strandat 743.553 kb on - strandat 743.740 kb on + strand, within GFF672at 743.741 kb on - strandat 743.741 kb on - strandat 743.832 kb on - strandat 743.832 kb on - strandat 743.832 kb on - strandat 743.883 kb on + strandat 743.883 kb on + strandat 743.884 kb on - strandat 743.884 kb on - strandat 743.944 kb on + strand, within GFF673at 744.058 kb on - strand, within GFF673at 744.089 kb on + strandat 744.090 kb on - strandat 744.149 kb on + strandat 744.149 kb on + strandat 744.149 kb on + strandat 744.150 kb on - strandat 744.291 kb on + strandat 744.291 kb on + strandat 744.291 kb on + strandat 744.292 kb on - strandat 744.292 kb on - strandat 744.292 kb on - strandat 744.292 kb on - strandat 744.292 kb on - strandat 744.292 kb on - strandat 744.295 kb on + strandat 744.295 kb on + strandat 744.458 kb on + strand, within GFF674at 744.458 kb on + strand, within GFF674at 744.458 kb on + strand, within GFF674at 744.809 kb on + strand, within GFF675at 744.809 kb on + strand, within GFF675at 744.809 kb on + strand, within GFF675at 744.809 kb on + strand, within GFF675at 744.810 kb on - strand, within GFF675at 744.810 kb on - strand, within GFF675at 744.810 kb on - strand, within GFF675at 744.810 kb on - strand, within GFF675at 744.810 kb on - strand, within GFF675at 744.812 kb on + strand, within GFF675at 744.813 kb on - strand, within GFF675at 744.969 kb on + strand, within GFF675at 744.969 kb on + strand, within GFF675at 744.970 kb on - strand, within GFF675at 744.971 kb on + strand, within GFF675at 744.971 kb on + strand, within GFF675at 744.971 kb on + strand, within GFF675at 744.971 kb on + strand, within GFF675at 744.972 kb on - strand, within GFF675at 744.972 kb on - strand, within GFF675at 744.972 kb on - strand, within GFF675at 744.972 kb on - strand, within GFF675at 744.972 kb on - strand, within GFF675at 744.972 kb on - strand, within GFF675at 744.972 kb on - strand, within GFF675at 744.985 kb on + strand, within GFF675at 745.016 kb on + strand, within GFF675at 745.016 kb on + strand, within GFF675at 745.017 kb on - strand, within GFF675at 745.017 kb on - strand, within GFF675at 745.017 kb on - strand, within GFF675at 745.017 kb on - strand, within GFF675at 745.017 kb on - strand, within GFF675at 745.017 kb on - strand, within GFF675at 745.348 kb on + strand, within GFF675at 745.349 kb on - strand, within GFF675at 745.349 kb on - strand, within GFF675at 745.349 kb on - strand, within GFF675at 745.349 kb on - strand, within GFF675at 745.558 kb on + strandat 745.559 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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743,307 + -0.1
743,307 + -1.2
743,308 - -0.3
743,308 - -0.0
743,308 - -0.7
743,334 + -0.1
743,335 - -0.1
743,335 - +0.2
743,364 + -0.8
743,380 + -0.2
743,380 + +0.0
743,380 + -0.2
743,380 + -0.2
743,380 + -0.2
743,380 + +0.2
743,380 + +0.5
743,380 + +0.5
743,380 + -0.4
743,380 + -0.4
743,380 + +0.1
743,380 + +0.5
743,380 + +1.1
743,380 + +0.0
743,381 - -0.5
743,381 - +0.4
743,381 - -0.4
743,381 - -0.9
743,381 - -0.4
743,381 - +0.2
743,381 - +0.1
743,381 - +0.3
743,381 - -0.1
743,381 - -0.4
743,381 - +0.9
743,381 - -1.6
743,430 + -0.7
743,430 + +0.4
743,430 + +0.7
743,430 + +0.6
743,431 - -0.1
743,431 - -0.7
743,525 + +0.2
743,525 + -0.2
743,552 + -1.2
743,553 - +0.6
743,740 + GFF672 0.89 -0.4
743,741 - +0.3
743,741 - -0.3
743,832 - +0.4
743,832 - +0.9
743,832 - +0.8
743,883 + -0.6
743,883 + -0.3
743,884 - -1.7
743,884 - +0.3
743,944 + GFF673 0.24 -0.9
744,058 - GFF673 0.76 -1.1
744,089 + +0.6
744,090 - -0.4
744,149 + -0.4
744,149 + +1.0
744,149 + +0.1
744,150 - -0.1
744,291 + +0.2
744,291 + -2.7
744,291 + +0.7
744,292 - -0.8
744,292 - +0.3
744,292 - +0.7
744,292 - -0.1
744,292 - +0.2
744,292 - -0.8
744,295 + -0.0
744,295 + -1.4
744,458 + GFF674 0.56 +0.5
744,458 + GFF674 0.56 -0.5
744,458 + GFF674 0.56 +0.6
744,809 + GFF675 0.26 -0.1
744,809 + GFF675 0.26 +0.4
744,809 + GFF675 0.26 -0.4
744,809 + GFF675 0.26 -0.3
744,810 - GFF675 0.26 -1.0
744,810 - GFF675 0.26 +0.3
744,810 - GFF675 0.26 +0.2
744,810 - GFF675 0.26 +0.7
744,810 - GFF675 0.26 +0.9
744,812 + GFF675 0.26 +1.1
744,813 - GFF675 0.26 -0.0
744,969 + GFF675 0.43 +0.4
744,969 + GFF675 0.43 -0.6
744,970 - GFF675 0.43 +0.5
744,971 + GFF675 0.43 -0.4
744,971 + GFF675 0.43 +1.2
744,971 + GFF675 0.43 +0.2
744,971 + GFF675 0.43 +0.3
744,972 - GFF675 0.43 -1.2
744,972 - GFF675 0.43 +0.1
744,972 - GFF675 0.43 +0.5
744,972 - GFF675 0.43 +0.1
744,972 - GFF675 0.43 -0.1
744,972 - GFF675 0.43 +0.0
744,972 - GFF675 0.43 +0.0
744,985 + GFF675 0.45 -0.7
745,016 + GFF675 0.48 -0.8
745,016 + GFF675 0.48 -0.3
745,017 - GFF675 0.48 -0.9
745,017 - GFF675 0.48 -1.7
745,017 - GFF675 0.48 +1.0
745,017 - GFF675 0.48 +1.3
745,017 - GFF675 0.48 +0.5
745,017 - GFF675 0.48 +0.3
745,348 + GFF675 0.84 +0.8
745,349 - GFF675 0.84 -0.6
745,349 - GFF675 0.84 +0.4
745,349 - GFF675 0.84 +1.4
745,349 - GFF675 0.84 -0.3
745,558 + +1.0
745,559 - -1.6

Or see this region's nucleotide sequence