Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5262 and GFF5263 are separated by 88 nucleotides GFF5263 and GFF5264 are separated by 69 nucleotides GFF5264 and GFF5265 are separated by 138 nucleotides
GFF5262 - hypothetical protein, at 3,067 to 3,555
GFF5262
GFF5263 - hypothetical protein, at 3,644 to 4,129
GFF5263
GFF5264 - hypothetical protein, at 4,199 to 4,861
GFF5264
GFF5265 - Glutamate-pyruvate aminotransferase AlaC, at 5,000 to 6,208
GFF5265
Position (kb) 4
5 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3.264 kb on - strand, within GFF5262 at 3.485 kb on + strand, within GFF5262 at 3.485 kb on + strand, within GFF5262 at 3.486 kb on - strand, within GFF5262 at 3.486 kb on - strand, within GFF5262 at 3.506 kb on + strand, within GFF5262 at 3.507 kb on - strand at 3.594 kb on + strand at 3.594 kb on + strand at 3.594 kb on + strand at 3.595 kb on - strand at 3.595 kb on - strand at 3.633 kb on + strand at 3.633 kb on + strand at 3.633 kb on + strand at 3.633 kb on + strand at 3.634 kb on - strand at 3.636 kb on + strand at 3.636 kb on + strand at 3.636 kb on + strand at 3.637 kb on - strand at 3.777 kb on + strand, within GFF5263 at 3.777 kb on + strand, within GFF5263 at 3.777 kb on + strand, within GFF5263 at 3.777 kb on + strand, within GFF5263 at 3.832 kb on - strand, within GFF5263 at 3.909 kb on + strand, within GFF5263 at 3.910 kb on - strand, within GFF5263 at 3.910 kb on - strand, within GFF5263 at 3.910 kb on - strand, within GFF5263 at 3.956 kb on + strand, within GFF5263 at 3.956 kb on + strand, within GFF5263 at 3.956 kb on + strand, within GFF5263 at 3.957 kb on - strand, within GFF5263 at 4.171 kb on + strand at 4.171 kb on + strand at 4.172 kb on - strand at 4.173 kb on + strand at 4.173 kb on + strand at 4.173 kb on + strand at 4.173 kb on + strand at 4.173 kb on + strand at 4.174 kb on - strand at 4.174 kb on - strand at 4.174 kb on - strand at 4.174 kb on - strand at 4.201 kb on - strand at 4.201 kb on - strand at 4.201 kb on - strand at 4.267 kb on - strand, within GFF5264 at 4.312 kb on - strand, within GFF5264 at 4.460 kb on - strand, within GFF5264 at 4.620 kb on + strand, within GFF5264 at 4.620 kb on + strand, within GFF5264 at 4.621 kb on - strand, within GFF5264 at 4.621 kb on - strand, within GFF5264 at 4.672 kb on - strand, within GFF5264 at 4.765 kb on - strand, within GFF5264 at 4.889 kb on + strand at 4.907 kb on + strand at 4.907 kb on + strand at 4.907 kb on + strand at 4.907 kb on + strand at 4.924 kb on + strand at 4.925 kb on - strand at 4.981 kb on + strand at 4.981 kb on + strand at 4.981 kb on + strand at 4.982 kb on - strand at 4.982 kb on - strand at 4.982 kb on - strand at 5.037 kb on + strand at 5.037 kb on + strand at 5.037 kb on + strand at 5.038 kb on - strand at 5.054 kb on + strand at 5.054 kb on + strand at 5.259 kb on - strand, within GFF5265 at 5.259 kb on - strand, within GFF5265 at 5.409 kb on - strand, within GFF5265 at 5.409 kb on - strand, within GFF5265 at 5.607 kb on - strand, within GFF5265 at 5.607 kb on - strand, within GFF5265 at 5.607 kb on - strand, within GFF5265 at 5.636 kb on + strand, within GFF5265 at 5.636 kb on + strand, within GFF5265 at 5.651 kb on + strand, within GFF5265 at 5.652 kb on - strand, within GFF5265 at 5.735 kb on + strand, within GFF5265 at 5.735 kb on + strand, within GFF5265 at 5.735 kb on + strand, within GFF5265 at 5.736 kb on - strand, within GFF5265 at 5.736 kb on - strand, within GFF5265 at 5.736 kb on - strand, within GFF5265 at 5.736 kb on - strand, within GFF5265 at 5.813 kb on + strand, within GFF5265 at 5.813 kb on + strand, within GFF5265 at 5.814 kb on - strand, within GFF5265 at 5.823 kb on - strand, within GFF5265
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 3,264 - GFF5262 0.40 +0.7 3,485 + GFF5262 0.85 +0.3 3,485 + GFF5262 0.85 +0.4 3,486 - GFF5262 0.86 -0.0 3,486 - GFF5262 0.86 -1.2 3,506 + GFF5262 0.90 -0.5 3,507 - -1.7 3,594 + +1.0 3,594 + -0.4 3,594 + -0.3 3,595 - +0.5 3,595 - +0.7 3,633 + -1.4 3,633 + +1.2 3,633 + -0.7 3,633 + -0.4 3,634 - -0.1 3,636 + -0.6 3,636 + -0.7 3,636 + +0.3 3,637 - -0.9 3,777 + GFF5263 0.27 +0.8 3,777 + GFF5263 0.27 -0.2 3,777 + GFF5263 0.27 -0.8 3,777 + GFF5263 0.27 +0.6 3,832 - GFF5263 0.39 +1.1 3,909 + GFF5263 0.55 -1.4 3,910 - GFF5263 0.55 -0.4 3,910 - GFF5263 0.55 +0.0 3,910 - GFF5263 0.55 +0.3 3,956 + GFF5263 0.64 +0.4 3,956 + GFF5263 0.64 -0.6 3,956 + GFF5263 0.64 +0.0 3,957 - GFF5263 0.64 -0.1 4,171 + -0.5 4,171 + +0.8 4,172 - -1.1 4,173 + +0.5 4,173 + -0.4 4,173 + +0.5 4,173 + +0.8 4,173 + +1.3 4,174 - -0.4 4,174 - +0.6 4,174 - -0.3 4,174 - +0.6 4,201 - +0.3 4,201 - -0.6 4,201 - +1.0 4,267 - GFF5264 0.10 -0.1 4,312 - GFF5264 0.17 -0.2 4,460 - GFF5264 0.39 -1.2 4,620 + GFF5264 0.63 -0.9 4,620 + GFF5264 0.63 -0.8 4,621 - GFF5264 0.64 -1.6 4,621 - GFF5264 0.64 -0.4 4,672 - GFF5264 0.71 -1.8 4,765 - GFF5264 0.85 -0.1 4,889 + -0.2 4,907 + +0.3 4,907 + -1.2 4,907 + -1.0 4,907 + -0.3 4,924 + +1.6 4,925 - +0.6 4,981 + -0.9 4,981 + +0.2 4,981 + -0.5 4,982 - -0.9 4,982 - -0.4 4,982 - +0.1 5,037 + +1.8 5,037 + +0.1 5,037 + -0.8 5,038 - +0.6 5,054 + -0.9 5,054 + -0.9 5,259 - GFF5265 0.21 +0.4 5,259 - GFF5265 0.21 +0.5 5,409 - GFF5265 0.34 +0.6 5,409 - GFF5265 0.34 -0.5 5,607 - GFF5265 0.50 +0.1 5,607 - GFF5265 0.50 -0.7 5,607 - GFF5265 0.50 -1.2 5,636 + GFF5265 0.53 -1.5 5,636 + GFF5265 0.53 -0.2 5,651 + GFF5265 0.54 -0.0 5,652 - GFF5265 0.54 -0.3 5,735 + GFF5265 0.61 -0.9 5,735 + GFF5265 0.61 -2.0 5,735 + GFF5265 0.61 -1.0 5,736 - GFF5265 0.61 +0.4 5,736 - GFF5265 0.61 -0.4 5,736 - GFF5265 0.61 +0.1 5,736 - GFF5265 0.61 +1.3 5,813 + GFF5265 0.67 -0.0 5,813 + GFF5265 0.67 -0.3 5,814 - GFF5265 0.67 -0.1 5,823 - GFF5265 0.68 -0.7
Or see this region's nucleotide sequence