Strain Fitness in Pseudomonas sp. DMC3 around GFF5247

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5245 and GFF5246 overlap by 1 nucleotidesGFF5246 and GFF5247 overlap by 4 nucleotidesGFF5247 and GFF5248 are separated by 416 nucleotides GFF5245 - Nitrate reductase, at 22,425 to 25,136 GFF5245 GFF5246 - Assimilatory nitrite reductase [NAD(P)H] small subunit, at 25,136 to 25,453 GFF5246 GFF5247 - Nitrite reductase [NAD(P)H], at 25,450 to 27,903 GFF5247 GFF5248 - Serine/threonine-protein kinase PknD, at 28,320 to 29,990 GFF5248 Position (kb) 25 26 27 28Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 24.594 kb on + strand, within GFF5245at 24.595 kb on - strand, within GFF5245at 24.608 kb on - strand, within GFF5245at 24.617 kb on + strand, within GFF5245at 24.617 kb on + strand, within GFF5245at 24.661 kb on + strand, within GFF5245at 24.661 kb on + strand, within GFF5245at 24.662 kb on - strand, within GFF5245at 24.662 kb on - strand, within GFF5245at 24.738 kb on - strand, within GFF5245at 24.738 kb on - strand, within GFF5245at 24.738 kb on - strand, within GFF5245at 24.738 kb on - strand, within GFF5245at 24.790 kb on + strand, within GFF5245at 24.790 kb on + strand, within GFF5245at 24.791 kb on - strand, within GFF5245at 24.793 kb on + strand, within GFF5245at 24.793 kb on + strand, within GFF5245at 24.794 kb on - strand, within GFF5245at 24.794 kb on - strand, within GFF5245at 24.823 kb on + strand, within GFF5245at 24.823 kb on + strand, within GFF5245at 24.823 kb on + strand, within GFF5245at 24.823 kb on + strand, within GFF5245at 24.823 kb on + strand, within GFF5245at 24.824 kb on - strand, within GFF5245at 24.824 kb on - strand, within GFF5245at 24.824 kb on - strand, within GFF5245at 24.824 kb on - strand, within GFF5245at 25.102 kb on + strandat 25.256 kb on - strand, within GFF5246at 25.256 kb on - strand, within GFF5246at 25.285 kb on - strand, within GFF5246at 25.285 kb on - strand, within GFF5246at 25.437 kb on - strandat 25.438 kb on + strandat 25.439 kb on - strandat 25.439 kb on - strandat 25.439 kb on - strandat 25.643 kb on + strandat 25.643 kb on + strandat 25.664 kb on + strandat 25.664 kb on + strandat 25.665 kb on - strandat 25.665 kb on - strandat 25.706 kb on + strand, within GFF5247at 25.707 kb on - strand, within GFF5247at 25.787 kb on + strand, within GFF5247at 25.787 kb on + strand, within GFF5247at 25.787 kb on + strand, within GFF5247at 25.787 kb on + strand, within GFF5247at 25.787 kb on + strand, within GFF5247at 25.787 kb on + strand, within GFF5247at 25.787 kb on + strand, within GFF5247at 25.788 kb on - strand, within GFF5247at 25.788 kb on - strand, within GFF5247at 25.788 kb on - strand, within GFF5247at 25.788 kb on - strand, within GFF5247at 25.788 kb on - strand, within GFF5247at 25.788 kb on - strand, within GFF5247at 25.788 kb on - strand, within GFF5247at 25.788 kb on - strand, within GFF5247at 25.822 kb on + strand, within GFF5247at 25.822 kb on + strand, within GFF5247at 25.822 kb on + strand, within GFF5247at 25.823 kb on - strand, within GFF5247at 25.823 kb on - strand, within GFF5247at 25.823 kb on - strand, within GFF5247at 26.123 kb on + strand, within GFF5247at 26.123 kb on + strand, within GFF5247at 26.123 kb on + strand, within GFF5247at 26.124 kb on - strand, within GFF5247at 26.124 kb on - strand, within GFF5247at 26.124 kb on - strand, within GFF5247at 26.124 kb on - strand, within GFF5247at 26.201 kb on + strand, within GFF5247at 26.201 kb on + strand, within GFF5247at 26.201 kb on + strand, within GFF5247at 26.202 kb on - strand, within GFF5247at 26.202 kb on - strand, within GFF5247at 26.202 kb on - strand, within GFF5247at 26.202 kb on - strand, within GFF5247at 26.202 kb on - strand, within GFF5247at 26.202 kb on - strand, within GFF5247at 26.298 kb on - strand, within GFF5247at 26.298 kb on - strand, within GFF5247at 26.298 kb on - strand, within GFF5247at 26.298 kb on - strand, within GFF5247at 26.300 kb on + strand, within GFF5247at 26.300 kb on + strand, within GFF5247at 26.300 kb on + strand, within GFF5247at 26.300 kb on + strand, within GFF5247at 26.300 kb on + strand, within GFF5247at 26.300 kb on + strand, within GFF5247at 26.300 kb on + strand, within GFF5247at 26.301 kb on - strand, within GFF5247at 26.301 kb on - strand, within GFF5247at 26.301 kb on - strand, within GFF5247at 26.354 kb on + strand, within GFF5247at 26.355 kb on - strand, within GFF5247at 26.487 kb on + strand, within GFF5247at 26.488 kb on - strand, within GFF5247at 26.686 kb on + strand, within GFF5247at 26.687 kb on - strand, within GFF5247at 26.687 kb on - strand, within GFF5247at 26.696 kb on - strand, within GFF5247at 26.768 kb on + strand, within GFF5247at 26.768 kb on + strand, within GFF5247at 26.769 kb on - strand, within GFF5247at 26.788 kb on - strand, within GFF5247at 26.966 kb on + strand, within GFF5247at 27.080 kb on + strand, within GFF5247at 27.080 kb on + strand, within GFF5247at 27.080 kb on + strand, within GFF5247at 27.080 kb on + strand, within GFF5247at 27.080 kb on + strand, within GFF5247at 27.081 kb on - strand, within GFF5247at 27.081 kb on - strand, within GFF5247at 27.095 kb on + strand, within GFF5247at 27.095 kb on + strand, within GFF5247at 27.599 kb on + strand, within GFF5247at 27.699 kb on - strandat 27.776 kb on + strandat 27.776 kb on + strandat 27.776 kb on + strandat 27.777 kb on - strandat 27.777 kb on - strandat 27.777 kb on - strandat 27.777 kb on - strandat 27.777 kb on - strandat 27.777 kb on - strandat 27.777 kb on - strandat 27.816 kb on - strandat 27.991 kb on + strandat 28.069 kb on + strandat 28.069 kb on + strandat 28.069 kb on + strandat 28.069 kb on + strandat 28.070 kb on - strandat 28.070 kb on - strandat 28.070 kb on - strandat 28.070 kb on - strandat 28.070 kb on - strandat 28.070 kb on - strandat 28.070 kb on - strandat 28.070 kb on - strandat 28.073 kb on + strandat 28.073 kb on + strandat 28.073 kb on + strandat 28.073 kb on + strandat 28.073 kb on + strandat 28.074 kb on - strandat 28.087 kb on + strandat 28.109 kb on - strandat 28.205 kb on + strandat 28.205 kb on + strandat 28.205 kb on + strandat 28.205 kb on + strandat 28.205 kb on + strandat 28.206 kb on - strandat 28.206 kb on - strandat 28.206 kb on - strandat 28.206 kb on - strandat 28.206 kb on - strandat 28.350 kb on + strandat 28.350 kb on + strandat 28.350 kb on + strandat 28.350 kb on + strandat 28.350 kb on + strandat 28.351 kb on - strandat 28.351 kb on - strandat 28.351 kb on - strandat 28.351 kb on - strandat 28.351 kb on - strandat 28.351 kb on - strandat 28.648 kb on + strand, within GFF5248at 28.649 kb on - strand, within GFF5248at 28.670 kb on - strand, within GFF5248at 28.670 kb on - strand, within GFF5248at 28.728 kb on - strand, within GFF5248at 28.777 kb on + strand, within GFF5248at 28.894 kb on - strand, within GFF5248

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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24,594 + GFF5245 0.80 -3.6
24,595 - GFF5245 0.80 -3.2
24,608 - GFF5245 0.80 -3.5
24,617 + GFF5245 0.81 -0.7
24,617 + GFF5245 0.81 -3.1
24,661 + GFF5245 0.82 -0.0
24,661 + GFF5245 0.82 -1.9
24,662 - GFF5245 0.82 -1.6
24,662 - GFF5245 0.82 -3.8
24,738 - GFF5245 0.85 -2.3
24,738 - GFF5245 0.85 -3.5
24,738 - GFF5245 0.85 -1.4
24,738 - GFF5245 0.85 -2.4
24,790 + GFF5245 0.87 -2.9
24,790 + GFF5245 0.87 -2.4
24,791 - GFF5245 0.87 -3.8
24,793 + GFF5245 0.87 -3.3
24,793 + GFF5245 0.87 -0.4
24,794 - GFF5245 0.87 -2.6
24,794 - GFF5245 0.87 -2.2
24,823 + GFF5245 0.88 -3.6
24,823 + GFF5245 0.88 -2.0
24,823 + GFF5245 0.88 -2.1
24,823 + GFF5245 0.88 +0.6
24,823 + GFF5245 0.88 -2.8
24,824 - GFF5245 0.88 -2.4
24,824 - GFF5245 0.88 -3.0
24,824 - GFF5245 0.88 -2.4
24,824 - GFF5245 0.88 -4.0
25,102 + -3.1
25,256 - GFF5246 0.38 -3.2
25,256 - GFF5246 0.38 -3.1
25,285 - GFF5246 0.47 -0.4
25,285 - GFF5246 0.47 -2.4
25,437 - -0.4
25,438 + -1.7
25,439 - -2.3
25,439 - -1.8
25,439 - -2.3
25,643 + -1.0
25,643 + -3.8
25,664 + -1.7
25,664 + -0.4
25,665 - -3.7
25,665 - -2.1
25,706 + GFF5247 0.10 -1.0
25,707 - GFF5247 0.10 -3.6
25,787 + GFF5247 0.14 -3.7
25,787 + GFF5247 0.14 -1.2
25,787 + GFF5247 0.14 -1.7
25,787 + GFF5247 0.14 -0.6
25,787 + GFF5247 0.14 -2.8
25,787 + GFF5247 0.14 -2.2
25,787 + GFF5247 0.14 -2.7
25,788 - GFF5247 0.14 -3.2
25,788 - GFF5247 0.14 -0.4
25,788 - GFF5247 0.14 -1.8
25,788 - GFF5247 0.14 -1.4
25,788 - GFF5247 0.14 -2.3
25,788 - GFF5247 0.14 -3.5
25,788 - GFF5247 0.14 -1.9
25,788 - GFF5247 0.14 -2.7
25,822 + GFF5247 0.15 -2.7
25,822 + GFF5247 0.15 -3.7
25,822 + GFF5247 0.15 -1.0
25,823 - GFF5247 0.15 -3.2
25,823 - GFF5247 0.15 -1.6
25,823 - GFF5247 0.15 -3.7
26,123 + GFF5247 0.27 -2.1
26,123 + GFF5247 0.27 -3.4
26,123 + GFF5247 0.27 -2.7
26,124 - GFF5247 0.27 -2.3
26,124 - GFF5247 0.27 -0.5
26,124 - GFF5247 0.27 -3.7
26,124 - GFF5247 0.27 -3.8
26,201 + GFF5247 0.31 -0.7
26,201 + GFF5247 0.31 -3.2
26,201 + GFF5247 0.31 -1.4
26,202 - GFF5247 0.31 -0.3
26,202 - GFF5247 0.31 -1.7
26,202 - GFF5247 0.31 -1.7
26,202 - GFF5247 0.31 -3.0
26,202 - GFF5247 0.31 -1.7
26,202 - GFF5247 0.31 -1.7
26,298 - GFF5247 0.35 -2.2
26,298 - GFF5247 0.35 -3.2
26,298 - GFF5247 0.35 -0.4
26,298 - GFF5247 0.35 -3.3
26,300 + GFF5247 0.35 -0.7
26,300 + GFF5247 0.35 -3.5
26,300 + GFF5247 0.35 -3.5
26,300 + GFF5247 0.35 -2.5
26,300 + GFF5247 0.35 -1.9
26,300 + GFF5247 0.35 -2.1
26,300 + GFF5247 0.35 -2.6
26,301 - GFF5247 0.35 -3.9
26,301 - GFF5247 0.35 -2.2
26,301 - GFF5247 0.35 -2.8
26,354 + GFF5247 0.37 -1.0
26,355 - GFF5247 0.37 -1.5
26,487 + GFF5247 0.42 -0.2
26,488 - GFF5247 0.42 -4.1
26,686 + GFF5247 0.50 -3.5
26,687 - GFF5247 0.50 -1.4
26,687 - GFF5247 0.50 -2.9
26,696 - GFF5247 0.51 -3.1
26,768 + GFF5247 0.54 -1.4
26,768 + GFF5247 0.54 -3.8
26,769 - GFF5247 0.54 -0.4
26,788 - GFF5247 0.55 -2.3
26,966 + GFF5247 0.62 -3.2
27,080 + GFF5247 0.66 -0.7
27,080 + GFF5247 0.66 -1.7
27,080 + GFF5247 0.66 -3.4
27,080 + GFF5247 0.66 -2.9
27,080 + GFF5247 0.66 -2.5
27,081 - GFF5247 0.66 -2.9
27,081 - GFF5247 0.66 -2.1
27,095 + GFF5247 0.67 -2.0
27,095 + GFF5247 0.67 -3.7
27,599 + GFF5247 0.88 -3.6
27,699 - -0.7
27,776 + -3.6
27,776 + -2.0
27,776 + -2.9
27,777 - -2.9
27,777 - -2.2
27,777 - -3.7
27,777 - -2.4
27,777 - -1.9
27,777 - -1.3
27,777 - -1.4
27,816 - -0.6
27,991 + -3.3
28,069 + -0.9
28,069 + -1.4
28,069 + -0.7
28,069 + -2.6
28,070 - -0.4
28,070 - -2.0
28,070 - -0.4
28,070 - -1.5
28,070 - -0.5
28,070 - -1.0
28,070 - +0.1
28,070 - -0.8
28,073 + -4.0
28,073 + -3.1
28,073 + -2.2
28,073 + -2.3
28,073 + -3.5
28,074 - +0.7
28,087 + -3.9
28,109 - -0.1
28,205 + -1.0
28,205 + -1.4
28,205 + -0.8
28,205 + +0.6
28,205 + +0.0
28,206 - +0.3
28,206 - -0.3
28,206 - +0.4
28,206 - -0.7
28,206 - -1.2
28,350 + -0.5
28,350 + -1.3
28,350 + -0.6
28,350 + +0.2
28,350 + -0.4
28,351 - -1.0
28,351 - +1.2
28,351 - -1.5
28,351 - -0.0
28,351 - +0.6
28,351 - +0.5
28,648 + GFF5248 0.20 +1.4
28,649 - GFF5248 0.20 -1.5
28,670 - GFF5248 0.21 -1.0
28,670 - GFF5248 0.21 -0.2
28,728 - GFF5248 0.24 -0.5
28,777 + GFF5248 0.27 +0.8
28,894 - GFF5248 0.34 +0.4

Or see this region's nucleotide sequence