Strain Fitness in Pseudomonas sp. DMC3 around GFF5246

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5245 and GFF5246 overlap by 1 nucleotidesGFF5246 and GFF5247 overlap by 4 nucleotides GFF5245 - Nitrate reductase, at 22,425 to 25,136 GFF5245 GFF5246 - Assimilatory nitrite reductase [NAD(P)H] small subunit, at 25,136 to 25,453 GFF5246 GFF5247 - Nitrite reductase [NAD(P)H], at 25,450 to 27,903 GFF5247 Position (kb) 25 26Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 24.352 kb on + strand, within GFF5245at 24.352 kb on + strand, within GFF5245at 24.352 kb on + strand, within GFF5245at 24.352 kb on + strand, within GFF5245at 24.594 kb on + strand, within GFF5245at 24.595 kb on - strand, within GFF5245at 24.608 kb on - strand, within GFF5245at 24.617 kb on + strand, within GFF5245at 24.617 kb on + strand, within GFF5245at 24.661 kb on + strand, within GFF5245at 24.661 kb on + strand, within GFF5245at 24.662 kb on - strand, within GFF5245at 24.662 kb on - strand, within GFF5245at 24.738 kb on - strand, within GFF5245at 24.738 kb on - strand, within GFF5245at 24.738 kb on - strand, within GFF5245at 24.738 kb on - strand, within GFF5245at 24.790 kb on + strand, within GFF5245at 24.790 kb on + strand, within GFF5245at 24.791 kb on - strand, within GFF5245at 24.793 kb on + strand, within GFF5245at 24.793 kb on + strand, within GFF5245at 24.794 kb on - strand, within GFF5245at 24.794 kb on - strand, within GFF5245at 24.823 kb on + strand, within GFF5245at 24.823 kb on + strand, within GFF5245at 24.823 kb on + strand, within GFF5245at 24.823 kb on + strand, within GFF5245at 24.823 kb on + strand, within GFF5245at 24.824 kb on - strand, within GFF5245at 24.824 kb on - strand, within GFF5245at 24.824 kb on - strand, within GFF5245at 24.824 kb on - strand, within GFF5245at 25.102 kb on + strandat 25.256 kb on - strand, within GFF5246at 25.256 kb on - strand, within GFF5246at 25.285 kb on - strand, within GFF5246at 25.285 kb on - strand, within GFF5246at 25.437 kb on - strandat 25.438 kb on + strandat 25.439 kb on - strandat 25.439 kb on - strandat 25.439 kb on - strandat 25.643 kb on + strandat 25.643 kb on + strandat 25.664 kb on + strandat 25.664 kb on + strandat 25.665 kb on - strandat 25.665 kb on - strandat 25.706 kb on + strand, within GFF5247at 25.707 kb on - strand, within GFF5247at 25.787 kb on + strand, within GFF5247at 25.787 kb on + strand, within GFF5247at 25.787 kb on + strand, within GFF5247at 25.787 kb on + strand, within GFF5247at 25.787 kb on + strand, within GFF5247at 25.787 kb on + strand, within GFF5247at 25.787 kb on + strand, within GFF5247at 25.788 kb on - strand, within GFF5247at 25.788 kb on - strand, within GFF5247at 25.788 kb on - strand, within GFF5247at 25.788 kb on - strand, within GFF5247at 25.788 kb on - strand, within GFF5247at 25.788 kb on - strand, within GFF5247at 25.788 kb on - strand, within GFF5247at 25.788 kb on - strand, within GFF5247at 25.822 kb on + strand, within GFF5247at 25.822 kb on + strand, within GFF5247at 25.822 kb on + strand, within GFF5247at 25.823 kb on - strand, within GFF5247at 25.823 kb on - strand, within GFF5247at 25.823 kb on - strand, within GFF5247at 26.123 kb on + strand, within GFF5247at 26.123 kb on + strand, within GFF5247at 26.123 kb on + strand, within GFF5247at 26.124 kb on - strand, within GFF5247at 26.124 kb on - strand, within GFF5247at 26.124 kb on - strand, within GFF5247at 26.124 kb on - strand, within GFF5247at 26.201 kb on + strand, within GFF5247at 26.201 kb on + strand, within GFF5247at 26.201 kb on + strand, within GFF5247at 26.202 kb on - strand, within GFF5247at 26.202 kb on - strand, within GFF5247at 26.202 kb on - strand, within GFF5247at 26.202 kb on - strand, within GFF5247at 26.202 kb on - strand, within GFF5247at 26.202 kb on - strand, within GFF5247at 26.298 kb on - strand, within GFF5247at 26.298 kb on - strand, within GFF5247at 26.298 kb on - strand, within GFF5247at 26.298 kb on - strand, within GFF5247at 26.300 kb on + strand, within GFF5247at 26.300 kb on + strand, within GFF5247at 26.300 kb on + strand, within GFF5247at 26.300 kb on + strand, within GFF5247at 26.300 kb on + strand, within GFF5247at 26.300 kb on + strand, within GFF5247at 26.300 kb on + strand, within GFF5247at 26.301 kb on - strand, within GFF5247at 26.301 kb on - strand, within GFF5247at 26.301 kb on - strand, within GFF5247at 26.354 kb on + strand, within GFF5247at 26.355 kb on - strand, within GFF5247

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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24,352 + GFF5245 0.71 -3.4
24,352 + GFF5245 0.71 -0.4
24,352 + GFF5245 0.71 -1.4
24,352 + GFF5245 0.71 -3.8
24,594 + GFF5245 0.80 -3.6
24,595 - GFF5245 0.80 -3.2
24,608 - GFF5245 0.80 -3.5
24,617 + GFF5245 0.81 -0.7
24,617 + GFF5245 0.81 -3.1
24,661 + GFF5245 0.82 -0.0
24,661 + GFF5245 0.82 -1.9
24,662 - GFF5245 0.82 -1.6
24,662 - GFF5245 0.82 -3.8
24,738 - GFF5245 0.85 -2.3
24,738 - GFF5245 0.85 -3.5
24,738 - GFF5245 0.85 -1.4
24,738 - GFF5245 0.85 -2.4
24,790 + GFF5245 0.87 -2.9
24,790 + GFF5245 0.87 -2.4
24,791 - GFF5245 0.87 -3.8
24,793 + GFF5245 0.87 -3.3
24,793 + GFF5245 0.87 -0.4
24,794 - GFF5245 0.87 -2.6
24,794 - GFF5245 0.87 -2.2
24,823 + GFF5245 0.88 -3.6
24,823 + GFF5245 0.88 -2.0
24,823 + GFF5245 0.88 -2.1
24,823 + GFF5245 0.88 +0.6
24,823 + GFF5245 0.88 -2.8
24,824 - GFF5245 0.88 -2.4
24,824 - GFF5245 0.88 -3.0
24,824 - GFF5245 0.88 -2.4
24,824 - GFF5245 0.88 -4.0
25,102 + -3.1
25,256 - GFF5246 0.38 -3.2
25,256 - GFF5246 0.38 -3.1
25,285 - GFF5246 0.47 -0.4
25,285 - GFF5246 0.47 -2.4
25,437 - -0.4
25,438 + -1.7
25,439 - -2.3
25,439 - -1.8
25,439 - -2.3
25,643 + -1.0
25,643 + -3.8
25,664 + -1.7
25,664 + -0.4
25,665 - -3.7
25,665 - -2.1
25,706 + GFF5247 0.10 -1.0
25,707 - GFF5247 0.10 -3.6
25,787 + GFF5247 0.14 -3.7
25,787 + GFF5247 0.14 -1.2
25,787 + GFF5247 0.14 -1.7
25,787 + GFF5247 0.14 -0.6
25,787 + GFF5247 0.14 -2.8
25,787 + GFF5247 0.14 -2.2
25,787 + GFF5247 0.14 -2.7
25,788 - GFF5247 0.14 -3.2
25,788 - GFF5247 0.14 -0.4
25,788 - GFF5247 0.14 -1.8
25,788 - GFF5247 0.14 -1.4
25,788 - GFF5247 0.14 -2.3
25,788 - GFF5247 0.14 -3.5
25,788 - GFF5247 0.14 -1.9
25,788 - GFF5247 0.14 -2.7
25,822 + GFF5247 0.15 -2.7
25,822 + GFF5247 0.15 -3.7
25,822 + GFF5247 0.15 -1.0
25,823 - GFF5247 0.15 -3.2
25,823 - GFF5247 0.15 -1.6
25,823 - GFF5247 0.15 -3.7
26,123 + GFF5247 0.27 -2.1
26,123 + GFF5247 0.27 -3.4
26,123 + GFF5247 0.27 -2.7
26,124 - GFF5247 0.27 -2.3
26,124 - GFF5247 0.27 -0.5
26,124 - GFF5247 0.27 -3.7
26,124 - GFF5247 0.27 -3.8
26,201 + GFF5247 0.31 -0.7
26,201 + GFF5247 0.31 -3.2
26,201 + GFF5247 0.31 -1.4
26,202 - GFF5247 0.31 -0.3
26,202 - GFF5247 0.31 -1.7
26,202 - GFF5247 0.31 -1.7
26,202 - GFF5247 0.31 -3.0
26,202 - GFF5247 0.31 -1.7
26,202 - GFF5247 0.31 -1.7
26,298 - GFF5247 0.35 -2.2
26,298 - GFF5247 0.35 -3.2
26,298 - GFF5247 0.35 -0.4
26,298 - GFF5247 0.35 -3.3
26,300 + GFF5247 0.35 -0.7
26,300 + GFF5247 0.35 -3.5
26,300 + GFF5247 0.35 -3.5
26,300 + GFF5247 0.35 -2.5
26,300 + GFF5247 0.35 -1.9
26,300 + GFF5247 0.35 -2.1
26,300 + GFF5247 0.35 -2.6
26,301 - GFF5247 0.35 -3.9
26,301 - GFF5247 0.35 -2.2
26,301 - GFF5247 0.35 -2.8
26,354 + GFF5247 0.37 -1.0
26,355 - GFF5247 0.37 -1.5

Or see this region's nucleotide sequence