Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5243 and GFF5244 are separated by 102 nucleotides GFF5244 and GFF5245 are separated by 13 nucleotides GFF5245 and GFF5246 overlap by 1 nucleotides GFF5246 and GFF5247 overlap by 4 nucleotides
GFF5243 - Outer membrane porin F, at 20,513 to 21,547
GFF5243
GFF5244 - Uroporphyrinogen-III C-methyltransferase, at 21,650 to 22,411
GFF5244
GFF5245 - Nitrate reductase, at 22,425 to 25,136
GFF5245
GFF5246 - Assimilatory nitrite reductase [NAD(P)H] small subunit, at 25,136 to 25,453
GFF5246
GFF5247 - Nitrite reductase [NAD(P)H], at 25,450 to 27,903
GFF5247
Position (kb) 22
23
24
25
26 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 21.505 kb on - strand at 21.517 kb on - strand at 21.517 kb on - strand at 21.541 kb on + strand at 21.541 kb on + strand at 21.541 kb on + strand at 21.542 kb on - strand at 21.542 kb on - strand at 21.542 kb on - strand at 21.545 kb on + strand at 21.545 kb on + strand at 21.545 kb on + strand at 21.545 kb on + strand at 21.545 kb on + strand at 21.545 kb on + strand at 21.545 kb on + strand at 21.545 kb on + strand at 21.545 kb on + strand at 21.546 kb on - strand at 21.546 kb on - strand at 21.549 kb on + strand at 21.550 kb on - strand at 21.550 kb on - strand at 21.550 kb on - strand at 21.645 kb on + strand at 21.645 kb on + strand at 21.645 kb on + strand at 21.646 kb on - strand at 21.646 kb on - strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.670 kb on - strand at 21.912 kb on + strand, within GFF5244 at 21.912 kb on + strand, within GFF5244 at 21.912 kb on + strand, within GFF5244 at 21.912 kb on + strand, within GFF5244 at 21.912 kb on + strand, within GFF5244 at 21.912 kb on + strand, within GFF5244 at 21.913 kb on - strand, within GFF5244 at 21.913 kb on - strand, within GFF5244 at 22.030 kb on + strand, within GFF5244 at 22.188 kb on + strand, within GFF5244 at 22.188 kb on + strand, within GFF5244 at 22.210 kb on + strand, within GFF5244 at 22.210 kb on + strand, within GFF5244 at 22.211 kb on - strand, within GFF5244 at 22.211 kb on - strand, within GFF5244 at 22.211 kb on - strand, within GFF5244 at 22.211 kb on - strand, within GFF5244 at 22.426 kb on + strand at 22.804 kb on + strand, within GFF5245 at 22.804 kb on + strand, within GFF5245 at 22.805 kb on - strand, within GFF5245 at 22.893 kb on + strand, within GFF5245 at 22.939 kb on + strand, within GFF5245 at 22.939 kb on + strand, within GFF5245 at 22.966 kb on - strand, within GFF5245 at 23.126 kb on - strand, within GFF5245 at 23.930 kb on + strand, within GFF5245 at 23.931 kb on - strand, within GFF5245 at 24.031 kb on + strand, within GFF5245 at 24.032 kb on - strand, within GFF5245 at 24.352 kb on + strand, within GFF5245 at 24.352 kb on + strand, within GFF5245 at 24.352 kb on + strand, within GFF5245 at 24.352 kb on + strand, within GFF5245 at 24.594 kb on + strand, within GFF5245 at 24.595 kb on - strand, within GFF5245 at 24.608 kb on - strand, within GFF5245 at 24.617 kb on + strand, within GFF5245 at 24.617 kb on + strand, within GFF5245 at 24.661 kb on + strand, within GFF5245 at 24.661 kb on + strand, within GFF5245 at 24.662 kb on - strand, within GFF5245 at 24.662 kb on - strand, within GFF5245 at 24.738 kb on - strand, within GFF5245 at 24.738 kb on - strand, within GFF5245 at 24.738 kb on - strand, within GFF5245 at 24.738 kb on - strand, within GFF5245 at 24.790 kb on + strand, within GFF5245 at 24.790 kb on + strand, within GFF5245 at 24.791 kb on - strand, within GFF5245 at 24.793 kb on + strand, within GFF5245 at 24.793 kb on + strand, within GFF5245 at 24.794 kb on - strand, within GFF5245 at 24.794 kb on - strand, within GFF5245 at 24.823 kb on + strand, within GFF5245 at 24.823 kb on + strand, within GFF5245 at 24.823 kb on + strand, within GFF5245 at 24.823 kb on + strand, within GFF5245 at 24.823 kb on + strand, within GFF5245 at 24.824 kb on - strand, within GFF5245 at 24.824 kb on - strand, within GFF5245 at 24.824 kb on - strand, within GFF5245 at 24.824 kb on - strand, within GFF5245 at 25.102 kb on + strand at 25.256 kb on - strand, within GFF5246 at 25.256 kb on - strand, within GFF5246 at 25.285 kb on - strand, within GFF5246 at 25.285 kb on - strand, within GFF5246 at 25.437 kb on - strand at 25.438 kb on + strand at 25.439 kb on - strand at 25.439 kb on - strand at 25.439 kb on - strand at 25.643 kb on + strand at 25.643 kb on + strand at 25.664 kb on + strand at 25.664 kb on + strand at 25.665 kb on - strand at 25.665 kb on - strand at 25.706 kb on + strand, within GFF5247 at 25.707 kb on - strand, within GFF5247 at 25.787 kb on + strand, within GFF5247 at 25.787 kb on + strand, within GFF5247 at 25.787 kb on + strand, within GFF5247 at 25.787 kb on + strand, within GFF5247 at 25.787 kb on + strand, within GFF5247 at 25.787 kb on + strand, within GFF5247 at 25.787 kb on + strand, within GFF5247 at 25.788 kb on - strand, within GFF5247 at 25.788 kb on - strand, within GFF5247 at 25.788 kb on - strand, within GFF5247 at 25.788 kb on - strand, within GFF5247 at 25.788 kb on - strand, within GFF5247 at 25.788 kb on - strand, within GFF5247 at 25.788 kb on - strand, within GFF5247 at 25.788 kb on - strand, within GFF5247 at 25.822 kb on + strand, within GFF5247 at 25.822 kb on + strand, within GFF5247 at 25.822 kb on + strand, within GFF5247 at 25.823 kb on - strand, within GFF5247 at 25.823 kb on - strand, within GFF5247 at 25.823 kb on - strand, within GFF5247 at 26.123 kb on + strand, within GFF5247 at 26.123 kb on + strand, within GFF5247 at 26.123 kb on + strand, within GFF5247 at 26.124 kb on - strand, within GFF5247 at 26.124 kb on - strand, within GFF5247 at 26.124 kb on - strand, within GFF5247 at 26.124 kb on - strand, within GFF5247
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 21,505 - -1.0 21,517 - -0.4 21,517 - -0.7 21,541 + -0.9 21,541 + -1.2 21,541 + -0.0 21,542 - -1.3 21,542 - -0.2 21,542 - -1.6 21,545 + +1.3 21,545 + -0.3 21,545 + +0.5 21,545 + +1.9 21,545 + -0.1 21,545 + -0.6 21,545 + -0.6 21,545 + -1.0 21,545 + -0.7 21,546 - -0.0 21,546 - -0.7 21,549 + -0.5 21,550 - -1.7 21,550 - -0.3 21,550 - -0.1 21,645 + +0.4 21,645 + +0.5 21,645 + +0.6 21,646 - -0.3 21,646 - +0.8 21,658 + +0.4 21,658 + +0.1 21,658 + +1.6 21,658 + +0.5 21,658 + -0.1 21,658 + +0.8 21,658 + -0.2 21,658 + -2.0 21,658 + -0.1 21,658 + -0.0 21,658 + +0.5 21,658 + +0.2 21,658 + -0.8 21,658 + +0.8 21,658 + -1.2 21,658 + +0.9 21,658 + +0.6 21,658 + -0.2 21,659 - +0.9 21,659 - -0.6 21,659 - -0.1 21,659 - -0.2 21,659 - -1.6 21,659 - -0.9 21,659 - -0.7 21,659 - -0.1 21,659 - -0.6 21,659 - -0.2 21,659 - -0.6 21,659 - +1.0 21,659 - +0.8 21,659 - -0.7 21,659 - -0.6 21,659 - -1.1 21,670 - -0.7 21,912 + GFF5244 0.34 -1.8 21,912 + GFF5244 0.34 -1.4 21,912 + GFF5244 0.34 -0.9 21,912 + GFF5244 0.34 -0.7 21,912 + GFF5244 0.34 -1.3 21,912 + GFF5244 0.34 -2.8 21,913 - GFF5244 0.35 -1.5 21,913 - GFF5244 0.35 -1.3 22,030 + GFF5244 0.50 -0.9 22,188 + GFF5244 0.71 -1.6 22,188 + GFF5244 0.71 -0.4 22,210 + GFF5244 0.73 -2.5 22,210 + GFF5244 0.73 -0.7 22,211 - GFF5244 0.74 -2.5 22,211 - GFF5244 0.74 -1.7 22,211 - GFF5244 0.74 -2.2 22,211 - GFF5244 0.74 -0.7 22,426 + -0.7 22,804 + GFF5245 0.14 -0.6 22,804 + GFF5245 0.14 -1.9 22,805 - GFF5245 0.14 -1.5 22,893 + GFF5245 0.17 -1.2 22,939 + GFF5245 0.19 -2.0 22,939 + GFF5245 0.19 -1.0 22,966 - GFF5245 0.20 -2.0 23,126 - GFF5245 0.26 -1.9 23,930 + GFF5245 0.55 -3.3 23,931 - GFF5245 0.56 -2.4 24,031 + GFF5245 0.59 -4.1 24,032 - GFF5245 0.59 -2.5 24,352 + GFF5245 0.71 -3.4 24,352 + GFF5245 0.71 -0.4 24,352 + GFF5245 0.71 -1.4 24,352 + GFF5245 0.71 -3.8 24,594 + GFF5245 0.80 -3.6 24,595 - GFF5245 0.80 -3.2 24,608 - GFF5245 0.80 -3.5 24,617 + GFF5245 0.81 -0.7 24,617 + GFF5245 0.81 -3.1 24,661 + GFF5245 0.82 -0.0 24,661 + GFF5245 0.82 -1.9 24,662 - GFF5245 0.82 -1.6 24,662 - GFF5245 0.82 -3.8 24,738 - GFF5245 0.85 -2.3 24,738 - GFF5245 0.85 -3.5 24,738 - GFF5245 0.85 -1.4 24,738 - GFF5245 0.85 -2.4 24,790 + GFF5245 0.87 -2.9 24,790 + GFF5245 0.87 -2.4 24,791 - GFF5245 0.87 -3.8 24,793 + GFF5245 0.87 -3.3 24,793 + GFF5245 0.87 -0.4 24,794 - GFF5245 0.87 -2.6 24,794 - GFF5245 0.87 -2.2 24,823 + GFF5245 0.88 -3.6 24,823 + GFF5245 0.88 -2.0 24,823 + GFF5245 0.88 -2.1 24,823 + GFF5245 0.88 +0.6 24,823 + GFF5245 0.88 -2.8 24,824 - GFF5245 0.88 -2.4 24,824 - GFF5245 0.88 -3.0 24,824 - GFF5245 0.88 -2.4 24,824 - GFF5245 0.88 -4.0 25,102 + -3.1 25,256 - GFF5246 0.38 -3.2 25,256 - GFF5246 0.38 -3.1 25,285 - GFF5246 0.47 -0.4 25,285 - GFF5246 0.47 -2.4 25,437 - -0.4 25,438 + -1.7 25,439 - -2.3 25,439 - -1.8 25,439 - -2.3 25,643 + -1.0 25,643 + -3.8 25,664 + -1.7 25,664 + -0.4 25,665 - -3.7 25,665 - -2.1 25,706 + GFF5247 0.10 -1.0 25,707 - GFF5247 0.10 -3.6 25,787 + GFF5247 0.14 -3.7 25,787 + GFF5247 0.14 -1.2 25,787 + GFF5247 0.14 -1.7 25,787 + GFF5247 0.14 -0.6 25,787 + GFF5247 0.14 -2.8 25,787 + GFF5247 0.14 -2.2 25,787 + GFF5247 0.14 -2.7 25,788 - GFF5247 0.14 -3.2 25,788 - GFF5247 0.14 -0.4 25,788 - GFF5247 0.14 -1.8 25,788 - GFF5247 0.14 -1.4 25,788 - GFF5247 0.14 -2.3 25,788 - GFF5247 0.14 -3.5 25,788 - GFF5247 0.14 -1.9 25,788 - GFF5247 0.14 -2.7 25,822 + GFF5247 0.15 -2.7 25,822 + GFF5247 0.15 -3.7 25,822 + GFF5247 0.15 -1.0 25,823 - GFF5247 0.15 -3.2 25,823 - GFF5247 0.15 -1.6 25,823 - GFF5247 0.15 -3.7 26,123 + GFF5247 0.27 -2.1 26,123 + GFF5247 0.27 -3.4 26,123 + GFF5247 0.27 -2.7 26,124 - GFF5247 0.27 -2.3 26,124 - GFF5247 0.27 -0.5 26,124 - GFF5247 0.27 -3.7 26,124 - GFF5247 0.27 -3.8
Or see this region's nucleotide sequence