Strain Fitness in Pseudomonas sp. DMC3 around GFF5186

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5184 and GFF5185 are separated by 0 nucleotidesGFF5185 and GFF5186 are separated by 114 nucleotidesGFF5186 and GFF5187 are separated by 157 nucleotides GFF5184 - Holliday junction ATP-dependent DNA helicase RuvB, at 63,313 to 64,374 GFF5184 GFF5185 - Holliday junction ATP-dependent DNA helicase RuvA, at 64,375 to 64,983 GFF5185 GFF5186 - Crossover junction endodeoxyribonuclease RuvC, at 65,098 to 65,625 GFF5186 GFF5187 - Transcriptional regulatory protein PmpR, at 65,783 to 66,529 GFF5187 Position (kb) 65 66Strain fitness (log2 ratio) -2 -1 0 1 2at 64.162 kb on - strand, within GFF5184at 64.162 kb on - strand, within GFF5184at 64.278 kb on - strandat 64.376 kb on + strandat 64.376 kb on + strandat 64.376 kb on + strandat 64.376 kb on + strandat 64.377 kb on - strandat 64.377 kb on - strandat 64.472 kb on + strand, within GFF5185at 64.803 kb on - strand, within GFF5185at 64.803 kb on - strand, within GFF5185at 64.803 kb on - strand, within GFF5185at 64.908 kb on - strand, within GFF5185at 65.097 kb on - strandat 65.318 kb on + strand, within GFF5186at 65.319 kb on - strand, within GFF5186at 65.448 kb on - strand, within GFF5186at 65.448 kb on - strand, within GFF5186at 65.478 kb on - strand, within GFF5186at 65.540 kb on + strand, within GFF5186at 65.540 kb on + strand, within GFF5186at 65.540 kb on + strand, within GFF5186at 65.541 kb on - strand, within GFF5186at 65.541 kb on - strand, within GFF5186at 65.541 kb on - strand, within GFF5186at 65.541 kb on - strand, within GFF5186at 65.541 kb on - strand, within GFF5186at 65.541 kb on - strand, within GFF5186at 65.541 kb on - strand, within GFF5186at 65.618 kb on - strandat 65.618 kb on - strandat 65.618 kb on - strandat 65.625 kb on + strandat 65.659 kb on + strandat 65.659 kb on + strandat 65.660 kb on - strandat 65.660 kb on - strandat 65.660 kb on - strandat 65.660 kb on - strandat 65.660 kb on - strandat 65.660 kb on - strandat 65.660 kb on - strandat 65.666 kb on - strandat 65.666 kb on - strandat 65.666 kb on - strandat 65.666 kb on - strandat 65.666 kb on - strandat 65.666 kb on - strandat 65.666 kb on - strandat 65.666 kb on - strandat 65.747 kb on + strandat 65.747 kb on + strandat 65.748 kb on - strandat 65.775 kb on + strandat 65.775 kb on + strandat 65.775 kb on + strandat 65.776 kb on - strandat 65.779 kb on + strandat 65.779 kb on + strandat 65.779 kb on + strandat 65.779 kb on + strandat 65.780 kb on - strandat 65.780 kb on - strandat 65.780 kb on - strandat 65.780 kb on - strandat 65.829 kb on + strandat 65.830 kb on - strandat 65.879 kb on + strand, within GFF5187at 65.879 kb on + strand, within GFF5187at 65.879 kb on + strand, within GFF5187at 65.879 kb on + strand, within GFF5187at 65.880 kb on - strand, within GFF5187at 65.880 kb on - strand, within GFF5187at 65.988 kb on + strand, within GFF5187at 65.988 kb on + strand, within GFF5187at 65.989 kb on - strand, within GFF5187at 66.007 kb on + strand, within GFF5187at 66.007 kb on + strand, within GFF5187at 66.007 kb on + strand, within GFF5187at 66.007 kb on + strand, within GFF5187at 66.135 kb on + strand, within GFF5187at 66.135 kb on + strand, within GFF5187at 66.135 kb on + strand, within GFF5187at 66.135 kb on + strand, within GFF5187at 66.136 kb on - strand, within GFF5187at 66.136 kb on - strand, within GFF5187at 66.136 kb on - strand, within GFF5187at 66.270 kb on + strand, within GFF5187at 66.271 kb on - strand, within GFF5187at 66.271 kb on - strand, within GFF5187at 66.529 kb on + strandat 66.529 kb on + strandat 66.529 kb on + strandat 66.530 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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64,162 - GFF5184 0.80 -0.9
64,162 - GFF5184 0.80 +0.7
64,278 - -0.1
64,376 + +0.7
64,376 + -0.6
64,376 + -0.6
64,376 + -0.6
64,377 - -1.0
64,377 - +0.9
64,472 + GFF5185 0.16 -0.2
64,803 - GFF5185 0.70 +0.7
64,803 - GFF5185 0.70 +2.0
64,803 - GFF5185 0.70 -0.9
64,908 - GFF5185 0.88 +0.9
65,097 - +0.6
65,318 + GFF5186 0.42 -1.0
65,319 - GFF5186 0.42 -0.9
65,448 - GFF5186 0.66 -0.3
65,448 - GFF5186 0.66 +0.7
65,478 - GFF5186 0.72 +0.2
65,540 + GFF5186 0.84 -0.0
65,540 + GFF5186 0.84 +0.7
65,540 + GFF5186 0.84 +0.1
65,541 - GFF5186 0.84 -0.9
65,541 - GFF5186 0.84 +0.5
65,541 - GFF5186 0.84 -1.5
65,541 - GFF5186 0.84 -0.3
65,541 - GFF5186 0.84 +0.3
65,541 - GFF5186 0.84 -0.6
65,541 - GFF5186 0.84 -0.9
65,618 - -0.3
65,618 - -0.4
65,618 - -0.1
65,625 + -2.2
65,659 + -0.5
65,659 + -0.7
65,660 - +0.1
65,660 - -0.2
65,660 - +1.1
65,660 - +0.3
65,660 - -0.5
65,660 - +0.5
65,660 - +0.2
65,666 - +0.5
65,666 - +0.7
65,666 - -0.5
65,666 - +0.1
65,666 - +0.1
65,666 - +0.2
65,666 - +0.6
65,666 - -1.6
65,747 + -0.4
65,747 + -0.8
65,748 - -0.2
65,775 + -1.1
65,775 + -0.4
65,775 + -0.0
65,776 - -0.4
65,779 + -1.3
65,779 + +0.0
65,779 + +0.9
65,779 + -0.1
65,780 - -1.1
65,780 - -0.2
65,780 - +1.1
65,780 - -0.6
65,829 + +0.3
65,830 - +0.1
65,879 + GFF5187 0.13 -1.8
65,879 + GFF5187 0.13 +0.4
65,879 + GFF5187 0.13 +0.2
65,879 + GFF5187 0.13 -0.2
65,880 - GFF5187 0.13 -1.3
65,880 - GFF5187 0.13 +0.3
65,988 + GFF5187 0.27 -0.4
65,988 + GFF5187 0.27 +0.1
65,989 - GFF5187 0.28 +1.0
66,007 + GFF5187 0.30 -0.1
66,007 + GFF5187 0.30 +0.9
66,007 + GFF5187 0.30 +0.1
66,007 + GFF5187 0.30 +0.6
66,135 + GFF5187 0.47 +1.1
66,135 + GFF5187 0.47 +0.1
66,135 + GFF5187 0.47 -0.6
66,135 + GFF5187 0.47 -0.1
66,136 - GFF5187 0.47 -1.5
66,136 - GFF5187 0.47 -0.3
66,136 - GFF5187 0.47 -1.2
66,270 + GFF5187 0.65 +0.6
66,271 - GFF5187 0.65 +1.0
66,271 - GFF5187 0.65 -0.7
66,529 + -0.4
66,529 + -0.3
66,529 + -1.4
66,530 - +1.3

Or see this region's nucleotide sequence