Strain Fitness in Pseudomonas sp. DMC3 around GFF5089

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5087 and GFF5088 overlap by 4 nucleotidesGFF5088 and GFF5089 are separated by 107 nucleotidesGFF5089 and GFF5090 are separated by 88 nucleotides GFF5087 - Ion-translocating oxidoreductase complex subunit E, at 75,498 to 76,070 GFF5087 GFF5088 - Endonuclease III, at 76,067 to 76,705 GFF5088 GFF5089 - hypothetical protein, at 76,813 to 76,992 GFF5089 GFF5090 - Virulence factors putative positive transcription regulator BvgA, at 77,081 to 77,707 GFF5090 Position (kb) 76 77Strain fitness (log2 ratio) -2 -1 0 1at 75.830 kb on - strand, within GFF5087at 76.015 kb on + strandat 76.015 kb on + strandat 76.016 kb on - strandat 76.016 kb on - strandat 76.092 kb on + strandat 76.092 kb on + strandat 76.092 kb on + strandat 76.092 kb on + strandat 76.092 kb on + strandat 76.092 kb on + strandat 76.093 kb on - strandat 76.093 kb on - strandat 76.143 kb on - strand, within GFF5088at 76.243 kb on + strand, within GFF5088at 76.244 kb on - strand, within GFF5088at 76.244 kb on - strand, within GFF5088at 76.244 kb on - strand, within GFF5088at 76.244 kb on - strand, within GFF5088at 76.290 kb on - strand, within GFF5088at 76.290 kb on - strand, within GFF5088at 76.310 kb on + strand, within GFF5088at 76.310 kb on + strand, within GFF5088at 76.311 kb on - strand, within GFF5088at 76.311 kb on - strand, within GFF5088at 76.680 kb on - strandat 76.680 kb on - strandat 76.688 kb on - strandat 76.688 kb on - strandat 76.763 kb on - strandat 76.763 kb on - strandat 76.771 kb on + strandat 76.771 kb on + strandat 76.771 kb on + strandat 76.772 kb on - strandat 76.772 kb on - strandat 76.773 kb on + strandat 76.773 kb on + strandat 76.774 kb on - strandat 76.774 kb on - strandat 76.774 kb on - strandat 76.774 kb on - strandat 76.774 kb on - strandat 76.818 kb on + strandat 76.818 kb on + strandat 76.841 kb on + strand, within GFF5089at 76.842 kb on - strand, within GFF5089at 76.889 kb on + strand, within GFF5089at 76.889 kb on + strand, within GFF5089at 76.993 kb on + strandat 76.994 kb on - strandat 77.163 kb on + strand, within GFF5090at 77.164 kb on - strand, within GFF5090at 77.164 kb on - strand, within GFF5090at 77.164 kb on - strand, within GFF5090at 77.164 kb on - strand, within GFF5090at 77.171 kb on + strand, within GFF5090at 77.171 kb on + strand, within GFF5090at 77.171 kb on + strand, within GFF5090at 77.172 kb on - strand, within GFF5090at 77.172 kb on - strand, within GFF5090at 77.172 kb on - strand, within GFF5090at 77.309 kb on - strand, within GFF5090at 77.340 kb on + strand, within GFF5090at 77.340 kb on + strand, within GFF5090at 77.340 kb on + strand, within GFF5090at 77.340 kb on + strand, within GFF5090at 77.340 kb on + strand, within GFF5090at 77.340 kb on + strand, within GFF5090at 77.340 kb on + strand, within GFF5090at 77.341 kb on - strand, within GFF5090at 77.341 kb on - strand, within GFF5090at 77.341 kb on - strand, within GFF5090at 77.341 kb on - strand, within GFF5090at 77.341 kb on - strand, within GFF5090at 77.410 kb on - strand, within GFF5090at 77.410 kb on - strand, within GFF5090at 77.515 kb on + strand, within GFF5090at 77.515 kb on + strand, within GFF5090at 77.540 kb on + strand, within GFF5090at 77.632 kb on - strand, within GFF5090at 77.653 kb on + strandat 77.653 kb on + strandat 77.653 kb on + strandat 77.654 kb on - strandat 77.654 kb on - strandat 77.654 kb on - strandat 77.702 kb on - strandat 77.788 kb on + strandat 77.832 kb on + strandat 77.832 kb on + strandat 77.833 kb on - strandat 77.833 kb on - strandat 77.845 kb on + strandat 77.845 kb on + strandat 77.846 kb on - strandat 77.846 kb on - strandat 77.908 kb on - strandat 77.923 kb on + strandat 77.924 kb on - strandat 77.924 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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75,830 - GFF5087 0.58 +0.9
76,015 + -0.4
76,015 + -0.0
76,016 - +0.0
76,016 - +0.2
76,092 + -0.1
76,092 + -0.2
76,092 + -0.2
76,092 + -0.5
76,092 + +1.2
76,092 + +1.1
76,093 - +0.6
76,093 - -0.3
76,143 - GFF5088 0.12 +0.7
76,243 + GFF5088 0.28 +0.7
76,244 - GFF5088 0.28 -0.1
76,244 - GFF5088 0.28 -0.5
76,244 - GFF5088 0.28 +0.0
76,244 - GFF5088 0.28 -0.2
76,290 - GFF5088 0.35 -0.3
76,290 - GFF5088 0.35 -0.2
76,310 + GFF5088 0.38 -0.5
76,310 + GFF5088 0.38 +0.9
76,311 - GFF5088 0.38 -0.4
76,311 - GFF5088 0.38 +0.5
76,680 - -0.6
76,680 - -0.6
76,688 - +0.0
76,688 - -0.2
76,763 - -0.1
76,763 - -0.6
76,771 + -1.2
76,771 + +0.3
76,771 + +1.7
76,772 - +0.1
76,772 - -0.1
76,773 + -0.4
76,773 + -0.6
76,774 - +1.1
76,774 - -1.3
76,774 - -1.5
76,774 - +0.3
76,774 - +0.9
76,818 + +0.5
76,818 + -0.2
76,841 + GFF5089 0.16 -0.3
76,842 - GFF5089 0.16 -1.9
76,889 + GFF5089 0.42 -0.9
76,889 + GFF5089 0.42 -0.9
76,993 + -0.3
76,994 - -1.0
77,163 + GFF5090 0.13 +0.9
77,164 - GFF5090 0.13 +0.5
77,164 - GFF5090 0.13 -1.1
77,164 - GFF5090 0.13 -0.8
77,164 - GFF5090 0.13 +0.1
77,171 + GFF5090 0.14 -0.0
77,171 + GFF5090 0.14 -0.6
77,171 + GFF5090 0.14 -1.0
77,172 - GFF5090 0.15 -0.8
77,172 - GFF5090 0.15 +0.5
77,172 - GFF5090 0.15 -0.4
77,309 - GFF5090 0.36 -0.6
77,340 + GFF5090 0.41 -0.6
77,340 + GFF5090 0.41 -0.3
77,340 + GFF5090 0.41 +0.2
77,340 + GFF5090 0.41 -0.0
77,340 + GFF5090 0.41 -0.6
77,340 + GFF5090 0.41 -0.4
77,340 + GFF5090 0.41 +0.2
77,341 - GFF5090 0.41 -1.9
77,341 - GFF5090 0.41 -0.4
77,341 - GFF5090 0.41 -2.2
77,341 - GFF5090 0.41 -0.4
77,341 - GFF5090 0.41 -0.6
77,410 - GFF5090 0.52 -0.2
77,410 - GFF5090 0.52 +0.4
77,515 + GFF5090 0.69 +0.3
77,515 + GFF5090 0.69 +0.6
77,540 + GFF5090 0.73 -1.8
77,632 - GFF5090 0.88 -0.2
77,653 + +0.3
77,653 + +0.7
77,653 + -0.6
77,654 - -0.1
77,654 - +0.2
77,654 - +1.6
77,702 - +0.5
77,788 + +0.1
77,832 + +0.5
77,832 + -1.0
77,833 - -0.2
77,833 - -0.4
77,845 + +1.1
77,845 + +0.1
77,846 - -2.2
77,846 - +0.9
77,908 - -2.6
77,923 + -0.3
77,924 - +1.5
77,924 - -0.4

Or see this region's nucleotide sequence