Strain Fitness in Pseudomonas sp. DMC3 around GFF508

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF507 and GFF508 are separated by 163 nucleotidesGFF508 and GFF509 overlap by 59 nucleotidesGFF509 and GFF510 are separated by 160 nucleotides GFF507 - 2-oxoglutarate carboxylase small subunit, at 561,859 to 563,301 GFF507 GFF508 - HTH-type transcriptional activator CmpR, at 563,465 to 564,427 GFF508 GFF509 - hypothetical protein, at 564,369 to 564,572 GFF509 GFF510 - HTH-type transcriptional regulator HexR, at 564,733 to 565,599 GFF510 Position (kb) 563 564 565Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 562.517 kb on + strand, within GFF507at 562.518 kb on - strand, within GFF507at 562.518 kb on - strand, within GFF507at 563.099 kb on + strand, within GFF507at 563.149 kb on + strand, within GFF507at 563.149 kb on + strand, within GFF507at 563.149 kb on + strand, within GFF507at 563.149 kb on + strand, within GFF507at 563.149 kb on + strand, within GFF507at 563.149 kb on + strand, within GFF507at 563.149 kb on + strand, within GFF507at 563.150 kb on - strand, within GFF507at 563.150 kb on - strand, within GFF507at 563.150 kb on - strand, within GFF507at 563.150 kb on - strand, within GFF507at 563.150 kb on - strand, within GFF507at 563.221 kb on + strandat 563.222 kb on - strandat 563.222 kb on - strandat 563.222 kb on - strandat 563.222 kb on - strandat 563.270 kb on - strandat 563.365 kb on + strandat 563.470 kb on + strandat 563.486 kb on - strandat 563.538 kb on - strandat 563.586 kb on + strand, within GFF508at 563.587 kb on - strand, within GFF508at 563.633 kb on + strand, within GFF508at 563.633 kb on + strand, within GFF508at 563.634 kb on - strand, within GFF508at 563.652 kb on - strand, within GFF508at 563.792 kb on + strand, within GFF508at 563.792 kb on + strand, within GFF508at 563.793 kb on - strand, within GFF508at 563.793 kb on - strand, within GFF508at 563.793 kb on - strand, within GFF508at 564.047 kb on + strand, within GFF508at 564.047 kb on + strand, within GFF508at 564.049 kb on + strand, within GFF508at 564.049 kb on + strand, within GFF508at 564.049 kb on + strand, within GFF508at 564.050 kb on - strand, within GFF508at 564.050 kb on - strand, within GFF508at 564.050 kb on - strand, within GFF508at 564.050 kb on - strand, within GFF508at 564.101 kb on + strand, within GFF508at 564.102 kb on - strand, within GFF508at 564.102 kb on - strand, within GFF508at 564.102 kb on - strand, within GFF508at 564.144 kb on + strand, within GFF508at 564.144 kb on + strand, within GFF508at 564.145 kb on - strand, within GFF508at 564.145 kb on - strand, within GFF508at 564.145 kb on - strand, within GFF508at 564.145 kb on - strand, within GFF508at 564.370 kb on + strandat 564.371 kb on - strandat 564.899 kb on + strand, within GFF510at 564.899 kb on + strand, within GFF510at 564.900 kb on - strand, within GFF510at 565.056 kb on + strand, within GFF510at 565.056 kb on + strand, within GFF510at 565.057 kb on - strand, within GFF510at 565.057 kb on - strand, within GFF510at 565.057 kb on - strand, within GFF510at 565.074 kb on + strand, within GFF510at 565.107 kb on + strand, within GFF510at 565.107 kb on + strand, within GFF510at 565.108 kb on - strand, within GFF510at 565.108 kb on - strand, within GFF510at 565.108 kb on - strand, within GFF510at 565.200 kb on - strand, within GFF510at 565.319 kb on + strand, within GFF510at 565.319 kb on + strand, within GFF510at 565.320 kb on - strand, within GFF510

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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562,517 + GFF507 0.46 -4.4
562,518 - GFF507 0.46 -3.8
562,518 - GFF507 0.46 -1.8
563,099 + GFF507 0.86 -3.2
563,149 + GFF507 0.89 -0.5
563,149 + GFF507 0.89 -1.6
563,149 + GFF507 0.89 -2.4
563,149 + GFF507 0.89 -2.9
563,149 + GFF507 0.89 -1.8
563,149 + GFF507 0.89 -2.6
563,149 + GFF507 0.89 -3.3
563,150 - GFF507 0.89 -1.9
563,150 - GFF507 0.89 -3.5
563,150 - GFF507 0.89 -3.1
563,150 - GFF507 0.89 -3.3
563,150 - GFF507 0.89 -2.3
563,221 + -1.8
563,222 - -2.0
563,222 - -1.4
563,222 - -3.1
563,222 - -2.8
563,270 - -3.1
563,365 + +0.8
563,470 + -1.5
563,486 - -3.8
563,538 - -1.4
563,586 + GFF508 0.13 -1.5
563,587 - GFF508 0.13 -2.3
563,633 + GFF508 0.17 -3.0
563,633 + GFF508 0.17 -2.9
563,634 - GFF508 0.18 -3.8
563,652 - GFF508 0.19 -2.6
563,792 + GFF508 0.34 -2.4
563,792 + GFF508 0.34 -1.6
563,793 - GFF508 0.34 -3.1
563,793 - GFF508 0.34 -1.9
563,793 - GFF508 0.34 -2.1
564,047 + GFF508 0.60 -1.9
564,047 + GFF508 0.60 -3.1
564,049 + GFF508 0.61 -2.2
564,049 + GFF508 0.61 -2.3
564,049 + GFF508 0.61 -1.7
564,050 - GFF508 0.61 -2.7
564,050 - GFF508 0.61 -1.9
564,050 - GFF508 0.61 -1.5
564,050 - GFF508 0.61 -1.5
564,101 + GFF508 0.66 -2.6
564,102 - GFF508 0.66 -2.3
564,102 - GFF508 0.66 -2.0
564,102 - GFF508 0.66 -1.7
564,144 + GFF508 0.71 -3.8
564,144 + GFF508 0.71 -2.9
564,145 - GFF508 0.71 -2.3
564,145 - GFF508 0.71 -1.4
564,145 - GFF508 0.71 -3.4
564,145 - GFF508 0.71 -1.5
564,370 + +0.7
564,371 - -2.8
564,899 + GFF510 0.19 +0.4
564,899 + GFF510 0.19 +1.5
564,900 - GFF510 0.19 -0.5
565,056 + GFF510 0.37 -0.6
565,056 + GFF510 0.37 +0.8
565,057 - GFF510 0.37 +0.3
565,057 - GFF510 0.37 -0.8
565,057 - GFF510 0.37 -0.3
565,074 + GFF510 0.39 -0.2
565,107 + GFF510 0.43 -0.8
565,107 + GFF510 0.43 -1.7
565,108 - GFF510 0.43 -0.5
565,108 - GFF510 0.43 +0.8
565,108 - GFF510 0.43 +0.2
565,200 - GFF510 0.54 -0.2
565,319 + GFF510 0.68 +0.2
565,319 + GFF510 0.68 -0.8
565,320 - GFF510 0.68 +0.2

Or see this region's nucleotide sequence