Strain Fitness in Pseudomonas sp. DMC3 around GFF506

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF505 and GFF506 are separated by 212 nucleotidesGFF506 and GFF507 are separated by 11 nucleotides GFF505 - hypothetical protein, at 557,607 to 559,826 GFF505 GFF506 - Oxaloacetate decarboxylase alpha chain, at 560,039 to 561,847 GFF506 GFF507 - 2-oxoglutarate carboxylase small subunit, at 561,859 to 563,301 GFF507 Position (kb) 560 561 562Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 559.070 kb on + strand, within GFF505at 559.186 kb on - strand, within GFF505at 559.222 kb on - strand, within GFF505at 559.270 kb on - strand, within GFF505at 559.352 kb on + strand, within GFF505at 559.352 kb on + strand, within GFF505at 559.353 kb on - strand, within GFF505at 559.353 kb on - strand, within GFF505at 559.417 kb on - strand, within GFF505at 559.417 kb on - strand, within GFF505at 559.441 kb on - strand, within GFF505at 559.455 kb on + strand, within GFF505at 559.455 kb on + strand, within GFF505at 559.456 kb on - strand, within GFF505at 559.456 kb on - strand, within GFF505at 559.550 kb on + strand, within GFF505at 559.550 kb on + strand, within GFF505at 559.550 kb on + strand, within GFF505at 559.604 kb on + strand, within GFF505at 559.605 kb on - strandat 559.605 kb on - strandat 559.605 kb on - strandat 559.605 kb on - strandat 559.605 kb on - strandat 559.729 kb on + strandat 559.791 kb on + strandat 559.791 kb on + strandat 559.791 kb on + strandat 559.791 kb on + strandat 559.792 kb on - strandat 559.792 kb on - strandat 559.832 kb on + strandat 559.833 kb on - strandat 559.833 kb on - strandat 559.881 kb on + strandat 559.881 kb on + strandat 559.881 kb on + strandat 559.892 kb on + strandat 559.893 kb on - strandat 559.893 kb on - strandat 559.950 kb on + strandat 560.013 kb on + strandat 560.035 kb on + strandat 560.349 kb on + strand, within GFF506at 560.349 kb on + strand, within GFF506at 560.349 kb on + strand, within GFF506at 560.349 kb on + strand, within GFF506at 560.349 kb on + strand, within GFF506at 560.349 kb on + strand, within GFF506at 560.349 kb on + strand, within GFF506at 560.350 kb on - strand, within GFF506at 560.404 kb on - strand, within GFF506at 560.573 kb on + strand, within GFF506at 560.573 kb on + strand, within GFF506at 560.573 kb on + strand, within GFF506at 560.574 kb on - strand, within GFF506at 560.574 kb on - strand, within GFF506at 560.574 kb on - strand, within GFF506at 560.574 kb on - strand, within GFF506at 560.742 kb on + strand, within GFF506at 560.743 kb on - strand, within GFF506at 560.743 kb on - strand, within GFF506at 560.772 kb on + strand, within GFF506at 560.773 kb on - strand, within GFF506at 560.789 kb on + strand, within GFF506at 561.015 kb on + strand, within GFF506at 561.015 kb on + strand, within GFF506at 561.015 kb on + strand, within GFF506at 561.015 kb on + strand, within GFF506at 561.016 kb on - strand, within GFF506at 561.033 kb on + strand, within GFF506at 561.033 kb on + strand, within GFF506at 561.033 kb on + strand, within GFF506at 561.033 kb on + strand, within GFF506at 561.034 kb on - strand, within GFF506at 561.034 kb on - strand, within GFF506at 561.034 kb on - strand, within GFF506at 561.039 kb on + strand, within GFF506at 561.039 kb on + strand, within GFF506at 561.039 kb on + strand, within GFF506at 561.040 kb on - strand, within GFF506at 561.040 kb on - strand, within GFF506at 561.040 kb on - strand, within GFF506at 561.040 kb on - strand, within GFF506at 561.040 kb on - strand, within GFF506at 561.084 kb on + strand, within GFF506at 561.297 kb on + strand, within GFF506at 561.298 kb on - strand, within GFF506at 561.409 kb on + strand, within GFF506at 561.409 kb on + strand, within GFF506at 561.410 kb on - strand, within GFF506at 561.410 kb on - strand, within GFF506at 561.410 kb on - strand, within GFF506at 561.411 kb on + strand, within GFF506at 561.411 kb on + strand, within GFF506at 561.412 kb on - strand, within GFF506at 561.412 kb on - strand, within GFF506at 561.412 kb on - strand, within GFF506at 561.726 kb on + strandat 561.827 kb on + strandat 561.853 kb on + strandat 561.853 kb on + strandat 561.853 kb on + strandat 561.932 kb on + strandat 561.932 kb on + strandat 561.932 kb on + strandat 561.933 kb on - strandat 561.933 kb on - strandat 561.933 kb on - strandat 561.933 kb on - strandat 561.933 kb on - strandat 562.017 kb on - strand, within GFF507at 562.020 kb on - strand, within GFF507at 562.020 kb on - strand, within GFF507at 562.020 kb on - strand, within GFF507at 562.164 kb on - strand, within GFF507at 562.164 kb on - strand, within GFF507at 562.205 kb on + strand, within GFF507at 562.205 kb on + strand, within GFF507at 562.206 kb on - strand, within GFF507at 562.208 kb on + strand, within GFF507at 562.209 kb on - strand, within GFF507at 562.427 kb on + strand, within GFF507at 562.427 kb on + strand, within GFF507at 562.428 kb on - strand, within GFF507at 562.428 kb on - strand, within GFF507at 562.517 kb on + strand, within GFF507at 562.518 kb on - strand, within GFF507at 562.518 kb on - strand, within GFF507

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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559,070 + GFF505 0.66 -0.2
559,186 - GFF505 0.71 -0.2
559,222 - GFF505 0.73 +0.1
559,270 - GFF505 0.75 -1.5
559,352 + GFF505 0.79 +0.1
559,352 + GFF505 0.79 +1.5
559,353 - GFF505 0.79 -1.2
559,353 - GFF505 0.79 +0.3
559,417 - GFF505 0.82 +0.4
559,417 - GFF505 0.82 +0.1
559,441 - GFF505 0.83 -0.8
559,455 + GFF505 0.83 +0.5
559,455 + GFF505 0.83 -1.0
559,456 - GFF505 0.83 +0.3
559,456 - GFF505 0.83 +0.1
559,550 + GFF505 0.88 -0.3
559,550 + GFF505 0.88 +0.1
559,550 + GFF505 0.88 +0.2
559,604 + GFF505 0.90 +0.3
559,605 - -0.7
559,605 - +0.3
559,605 - -0.3
559,605 - +0.7
559,605 - -0.9
559,729 + -0.5
559,791 + -0.4
559,791 + -0.6
559,791 + +1.4
559,791 + -0.2
559,792 - -0.8
559,792 - -0.4
559,832 + +1.2
559,833 - -0.8
559,833 - +0.5
559,881 + -0.2
559,881 + -3.3
559,881 + -0.0
559,892 + +0.3
559,893 - -0.1
559,893 - +0.1
559,950 + +0.3
560,013 + -1.8
560,035 + -0.9
560,349 + GFF506 0.17 -1.7
560,349 + GFF506 0.17 -1.6
560,349 + GFF506 0.17 +0.2
560,349 + GFF506 0.17 -1.6
560,349 + GFF506 0.17 -3.9
560,349 + GFF506 0.17 -2.9
560,349 + GFF506 0.17 -2.0
560,350 - GFF506 0.17 -3.3
560,404 - GFF506 0.20 -0.9
560,573 + GFF506 0.30 -1.9
560,573 + GFF506 0.30 -1.0
560,573 + GFF506 0.30 -3.6
560,574 - GFF506 0.30 -3.1
560,574 - GFF506 0.30 -2.8
560,574 - GFF506 0.30 -4.3
560,574 - GFF506 0.30 -1.7
560,742 + GFF506 0.39 -1.5
560,743 - GFF506 0.39 -0.8
560,743 - GFF506 0.39 -1.9
560,772 + GFF506 0.41 -1.3
560,773 - GFF506 0.41 -2.7
560,789 + GFF506 0.41 -0.6
561,015 + GFF506 0.54 -2.8
561,015 + GFF506 0.54 -1.7
561,015 + GFF506 0.54 -2.7
561,015 + GFF506 0.54 -2.4
561,016 - GFF506 0.54 -1.9
561,033 + GFF506 0.55 -3.0
561,033 + GFF506 0.55 +0.8
561,033 + GFF506 0.55 -2.3
561,033 + GFF506 0.55 +0.8
561,034 - GFF506 0.55 -2.5
561,034 - GFF506 0.55 -2.2
561,034 - GFF506 0.55 -3.4
561,039 + GFF506 0.55 -1.4
561,039 + GFF506 0.55 -1.5
561,039 + GFF506 0.55 -0.2
561,040 - GFF506 0.55 -2.2
561,040 - GFF506 0.55 -1.2
561,040 - GFF506 0.55 -1.3
561,040 - GFF506 0.55 -4.0
561,040 - GFF506 0.55 -2.3
561,084 + GFF506 0.58 -2.3
561,297 + GFF506 0.70 -1.3
561,298 - GFF506 0.70 -1.5
561,409 + GFF506 0.76 -1.5
561,409 + GFF506 0.76 -2.2
561,410 - GFF506 0.76 -1.6
561,410 - GFF506 0.76 -3.0
561,410 - GFF506 0.76 -0.4
561,411 + GFF506 0.76 -3.5
561,411 + GFF506 0.76 -1.4
561,412 - GFF506 0.76 -1.9
561,412 - GFF506 0.76 -1.8
561,412 - GFF506 0.76 -1.9
561,726 + -2.7
561,827 + -2.2
561,853 + -4.4
561,853 + -3.2
561,853 + -0.5
561,932 + -1.9
561,932 + -3.8
561,932 + -2.2
561,933 - -3.6
561,933 - -1.5
561,933 - -0.9
561,933 - -1.9
561,933 - -2.0
562,017 - GFF507 0.11 -2.7
562,020 - GFF507 0.11 -2.2
562,020 - GFF507 0.11 -2.7
562,020 - GFF507 0.11 -3.1
562,164 - GFF507 0.21 -0.2
562,164 - GFF507 0.21 -3.8
562,205 + GFF507 0.24 -2.5
562,205 + GFF507 0.24 -3.0
562,206 - GFF507 0.24 -1.9
562,208 + GFF507 0.24 -3.1
562,209 - GFF507 0.24 -2.3
562,427 + GFF507 0.39 -3.8
562,427 + GFF507 0.39 -1.9
562,428 - GFF507 0.39 -0.8
562,428 - GFF507 0.39 -1.4
562,517 + GFF507 0.46 -4.4
562,518 - GFF507 0.46 -3.8
562,518 - GFF507 0.46 -1.8

Or see this region's nucleotide sequence