Strain Fitness in Pseudomonas sp. DMC3 around GFF4912

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4912 and GFF4913 overlap by 4 nucleotides GFF4912 - RecBCD enzyme subunit RecC, at 160 to 3,612 GFF4912 GFF4913 - RecBCD enzyme subunit RecB, at 3,609 to 7,295 GFF4913 Position (kb) 0 1 2 3 4Strain fitness (log2 ratio) -2 -1 0 1 2at 0.070 kb on + strandat 0.070 kb on + strandat 0.119 kb on - strandat 0.119 kb on - strandat 0.119 kb on - strandat 0.119 kb on - strandat 0.119 kb on - strandat 0.119 kb on - strandat 0.119 kb on - strandat 0.159 kb on + strandat 0.159 kb on + strandat 0.160 kb on - strandat 0.160 kb on - strandat 0.160 kb on - strandat 0.160 kb on - strandat 0.160 kb on - strandat 0.425 kb on - strandat 0.518 kb on + strand, within GFF4912at 0.559 kb on - strand, within GFF4912at 0.701 kb on + strand, within GFF4912at 0.953 kb on + strand, within GFF4912at 0.954 kb on - strand, within GFF4912at 1.018 kb on + strand, within GFF4912at 1.018 kb on + strand, within GFF4912at 1.018 kb on + strand, within GFF4912at 1.018 kb on + strand, within GFF4912at 1.018 kb on + strand, within GFF4912at 1.018 kb on + strand, within GFF4912at 1.018 kb on + strand, within GFF4912at 1.018 kb on + strand, within GFF4912at 1.018 kb on + strand, within GFF4912at 1.019 kb on - strand, within GFF4912at 1.019 kb on - strand, within GFF4912at 1.056 kb on - strand, within GFF4912at 1.127 kb on - strand, within GFF4912at 1.127 kb on - strand, within GFF4912at 1.127 kb on - strand, within GFF4912at 1.128 kb on + strand, within GFF4912at 1.128 kb on + strand, within GFF4912at 1.129 kb on - strand, within GFF4912at 1.147 kb on + strand, within GFF4912at 1.147 kb on + strand, within GFF4912at 1.147 kb on + strand, within GFF4912at 1.147 kb on + strand, within GFF4912at 1.148 kb on - strand, within GFF4912at 1.165 kb on + strand, within GFF4912at 1.454 kb on - strand, within GFF4912at 1.454 kb on - strand, within GFF4912at 2.029 kb on + strand, within GFF4912at 2.030 kb on - strand, within GFF4912at 2.234 kb on + strand, within GFF4912at 2.234 kb on + strand, within GFF4912at 2.234 kb on + strand, within GFF4912at 2.234 kb on + strand, within GFF4912at 2.350 kb on + strand, within GFF4912at 2.392 kb on + strand, within GFF4912at 2.392 kb on + strand, within GFF4912at 2.393 kb on - strand, within GFF4912at 2.393 kb on - strand, within GFF4912at 2.393 kb on - strand, within GFF4912at 2.393 kb on - strand, within GFF4912at 2.394 kb on + strand, within GFF4912at 2.394 kb on + strand, within GFF4912at 2.563 kb on + strand, within GFF4912at 2.615 kb on + strand, within GFF4912at 2.616 kb on - strand, within GFF4912at 2.616 kb on - strand, within GFF4912at 2.662 kb on + strand, within GFF4912at 2.662 kb on + strand, within GFF4912at 2.663 kb on - strand, within GFF4912at 2.810 kb on + strand, within GFF4912at 3.011 kb on + strand, within GFF4912at 3.030 kb on + strand, within GFF4912at 3.430 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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70 + +1.1
70 + -0.6
119 - -0.6
119 - -0.6
119 - +0.4
119 - +1.1
119 - +0.2
119 - +0.1
119 - -2.1
159 + -0.7
159 + -0.0
160 - -1.7
160 - +2.0
160 - +1.1
160 - -0.9
160 - +0.2
425 - +0.1
518 + GFF4912 0.10 +0.7
559 - GFF4912 0.12 -0.3
701 + GFF4912 0.16 -1.5
953 + GFF4912 0.23 +0.1
954 - GFF4912 0.23 -0.3
1,018 + GFF4912 0.25 -0.9
1,018 + GFF4912 0.25 +1.3
1,018 + GFF4912 0.25 -1.6
1,018 + GFF4912 0.25 -2.0
1,018 + GFF4912 0.25 -1.9
1,018 + GFF4912 0.25 +1.1
1,018 + GFF4912 0.25 +0.5
1,018 + GFF4912 0.25 -0.3
1,018 + GFF4912 0.25 -0.2
1,019 - GFF4912 0.25 -0.3
1,019 - GFF4912 0.25 -0.1
1,056 - GFF4912 0.26 -0.3
1,127 - GFF4912 0.28 -0.6
1,127 - GFF4912 0.28 -0.3
1,127 - GFF4912 0.28 -0.9
1,128 + GFF4912 0.28 -1.1
1,128 + GFF4912 0.28 -0.3
1,129 - GFF4912 0.28 -0.3
1,147 + GFF4912 0.29 +1.4
1,147 + GFF4912 0.29 +0.9
1,147 + GFF4912 0.29 -1.1
1,147 + GFF4912 0.29 -0.1
1,148 - GFF4912 0.29 -1.6
1,165 + GFF4912 0.29 -0.6
1,454 - GFF4912 0.37 +0.3
1,454 - GFF4912 0.37 -0.6
2,029 + GFF4912 0.54 -1.5
2,030 - GFF4912 0.54 -1.3
2,234 + GFF4912 0.60 -0.3
2,234 + GFF4912 0.60 -1.1
2,234 + GFF4912 0.60 -0.3
2,234 + GFF4912 0.60 -0.6
2,350 + GFF4912 0.63 -0.3
2,392 + GFF4912 0.65 -1.3
2,392 + GFF4912 0.65 -1.1
2,393 - GFF4912 0.65 +0.4
2,393 - GFF4912 0.65 -0.6
2,393 - GFF4912 0.65 -0.3
2,393 - GFF4912 0.65 -1.9
2,394 + GFF4912 0.65 -0.9
2,394 + GFF4912 0.65 -0.6
2,563 + GFF4912 0.70 -0.9
2,615 + GFF4912 0.71 +0.4
2,616 - GFF4912 0.71 -0.6
2,616 - GFF4912 0.71 +0.4
2,662 + GFF4912 0.72 -1.3
2,662 + GFF4912 0.72 -0.3
2,663 - GFF4912 0.72 -0.6
2,810 + GFF4912 0.77 -0.3
3,011 + GFF4912 0.83 -0.9
3,030 + GFF4912 0.83 +0.7
3,430 + -1.1

Or see this region's nucleotide sequence