Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4690 and GFF4691 are separated by 334 nucleotides GFF4691 and GFF4692 are separated by 12 nucleotides GFF4692 and GFF4693 are separated by 191 nucleotides
GFF4690 - hypothetical protein, at 186,509 to 187,450
GFF4690
GFF4691 - DNA-binding transcriptional regulator BolA, at 187,785 to 188,084
GFF4691
GFF4692 - hypothetical protein, at 188,097 to 188,612
GFF4692
GFF4693 - Fumarate hydratase class II, at 188,804 to 190,198
GFF4693
Position (kb) 187
188
189 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 186.852 kb on + strand, within GFF4690 at 186.853 kb on - strand, within GFF4690 at 186.853 kb on - strand, within GFF4690 at 186.853 kb on - strand, within GFF4690 at 186.853 kb on - strand, within GFF4690 at 186.882 kb on + strand, within GFF4690 at 186.882 kb on + strand, within GFF4690 at 186.882 kb on + strand, within GFF4690 at 186.882 kb on + strand, within GFF4690 at 186.969 kb on + strand, within GFF4690 at 186.970 kb on - strand, within GFF4690 at 186.970 kb on - strand, within GFF4690 at 187.041 kb on + strand, within GFF4690 at 187.041 kb on + strand, within GFF4690 at 187.042 kb on - strand, within GFF4690 at 187.113 kb on + strand, within GFF4690 at 187.113 kb on + strand, within GFF4690 at 187.113 kb on + strand, within GFF4690 at 187.114 kb on - strand, within GFF4690 at 187.194 kb on + strand, within GFF4690 at 187.194 kb on + strand, within GFF4690 at 187.195 kb on - strand, within GFF4690 at 187.195 kb on - strand, within GFF4690 at 187.215 kb on + strand, within GFF4690 at 187.395 kb on + strand at 187.396 kb on - strand at 187.419 kb on + strand at 187.454 kb on + strand at 187.454 kb on + strand at 187.454 kb on + strand at 187.454 kb on + strand at 187.455 kb on - strand at 187.455 kb on - strand at 187.455 kb on - strand at 187.537 kb on - strand at 187.537 kb on - strand at 187.537 kb on - strand at 187.563 kb on + strand at 187.564 kb on - strand at 187.564 kb on - strand at 187.564 kb on - strand at 187.607 kb on + strand at 187.608 kb on - strand at 187.634 kb on + strand at 187.635 kb on - strand at 187.684 kb on - strand at 187.684 kb on - strand at 187.710 kb on + strand at 187.711 kb on - strand at 187.747 kb on + strand at 187.747 kb on + strand at 187.748 kb on - strand at 187.748 kb on - strand at 187.748 kb on - strand at 187.751 kb on + strand at 187.797 kb on - strand at 187.858 kb on + strand, within GFF4691 at 187.859 kb on - strand, within GFF4691 at 187.859 kb on - strand, within GFF4691 at 187.859 kb on - strand, within GFF4691 at 187.912 kb on + strand, within GFF4691 at 187.979 kb on - strand, within GFF4691 at 188.043 kb on + strand, within GFF4691 at 188.044 kb on - strand, within GFF4691 at 188.098 kb on + strand at 188.099 kb on - strand at 188.266 kb on + strand, within GFF4692 at 188.266 kb on + strand, within GFF4692 at 188.267 kb on - strand, within GFF4692 at 188.267 kb on - strand, within GFF4692 at 188.267 kb on - strand, within GFF4692 at 188.314 kb on + strand, within GFF4692 at 188.315 kb on - strand, within GFF4692 at 188.470 kb on + strand, within GFF4692 at 188.470 kb on + strand, within GFF4692 at 188.470 kb on + strand, within GFF4692 at 188.471 kb on - strand, within GFF4692 at 188.471 kb on - strand, within GFF4692 at 188.471 kb on - strand, within GFF4692 at 188.471 kb on - strand, within GFF4692 at 188.471 kb on - strand, within GFF4692 at 188.624 kb on + strand at 188.624 kb on + strand at 188.624 kb on + strand at 188.625 kb on - strand at 188.667 kb on + strand at 188.668 kb on - strand at 188.668 kb on - strand at 188.668 kb on - strand at 188.668 kb on - strand at 188.770 kb on - strand at 188.859 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 186,852 + GFF4690 0.36 -1.6 186,853 - GFF4690 0.37 -0.2 186,853 - GFF4690 0.37 +0.0 186,853 - GFF4690 0.37 -0.6 186,853 - GFF4690 0.37 -0.4 186,882 + GFF4690 0.40 +2.0 186,882 + GFF4690 0.40 +0.2 186,882 + GFF4690 0.40 -1.0 186,882 + GFF4690 0.40 +0.3 186,969 + GFF4690 0.49 +0.2 186,970 - GFF4690 0.49 +0.1 186,970 - GFF4690 0.49 +0.4 187,041 + GFF4690 0.56 +0.1 187,041 + GFF4690 0.56 -0.8 187,042 - GFF4690 0.57 -1.6 187,113 + GFF4690 0.64 -0.4 187,113 + GFF4690 0.64 -0.2 187,113 + GFF4690 0.64 +0.7 187,114 - GFF4690 0.64 +0.8 187,194 + GFF4690 0.73 +0.1 187,194 + GFF4690 0.73 -0.2 187,195 - GFF4690 0.73 +0.0 187,195 - GFF4690 0.73 -0.9 187,215 + GFF4690 0.75 -0.8 187,395 + -0.6 187,396 - +0.4 187,419 + +1.1 187,454 + -0.2 187,454 + -0.1 187,454 + -2.0 187,454 + +0.4 187,455 - +0.4 187,455 - +1.6 187,455 - -0.7 187,537 - +0.0 187,537 - -0.8 187,537 - -0.1 187,563 + +0.3 187,564 - +0.2 187,564 - -0.2 187,564 - +0.0 187,607 + -0.2 187,608 - +0.6 187,634 + -0.2 187,635 - -0.4 187,684 - -0.7 187,684 - -0.4 187,710 + +1.9 187,711 - +0.3 187,747 + +0.6 187,747 + -0.0 187,748 - +0.8 187,748 - +0.1 187,748 - -0.9 187,751 + -2.1 187,797 - -0.1 187,858 + GFF4691 0.24 -0.8 187,859 - GFF4691 0.25 -1.0 187,859 - GFF4691 0.25 -1.2 187,859 - GFF4691 0.25 -3.1 187,912 + GFF4691 0.42 +0.2 187,979 - GFF4691 0.65 -0.5 188,043 + GFF4691 0.86 -0.6 188,044 - GFF4691 0.86 -2.3 188,098 + -1.1 188,099 - -0.4 188,266 + GFF4692 0.33 -1.0 188,266 + GFF4692 0.33 +0.7 188,267 - GFF4692 0.33 -0.4 188,267 - GFF4692 0.33 -0.1 188,267 - GFF4692 0.33 -0.6 188,314 + GFF4692 0.42 +0.4 188,315 - GFF4692 0.42 -0.8 188,470 + GFF4692 0.72 -0.9 188,470 + GFF4692 0.72 -0.2 188,470 + GFF4692 0.72 +1.9 188,471 - GFF4692 0.72 +0.0 188,471 - GFF4692 0.72 -0.1 188,471 - GFF4692 0.72 +0.3 188,471 - GFF4692 0.72 -0.4 188,471 - GFF4692 0.72 +0.7 188,624 + +0.1 188,624 + +0.0 188,624 + -0.2 188,625 - -0.7 188,667 + +1.2 188,668 - -0.1 188,668 - -0.0 188,668 - +0.9 188,668 - -1.0 188,770 - -0.9 188,859 - +0.7
Or see this region's nucleotide sequence