Strain Fitness in Pseudomonas sp. DMC3 around GFF4617

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4615 and GFF4616 are separated by 2 nucleotidesGFF4616 and GFF4617 are separated by 9 nucleotidesGFF4617 and GFF4618 are separated by 113 nucleotidesGFF4618 and GFF4619 are separated by 97 nucleotides GFF4615 - hypothetical protein, at 101,700 to 102,116 GFF4615 GFF4616 - hypothetical protein, at 102,119 to 102,601 GFF4616 GFF4617 - HTH-type transcriptional regulator CysB, at 102,611 to 103,585 GFF4617 GFF4618 - hypothetical protein, at 103,699 to 104,202 GFF4618 GFF4619 - hypothetical protein, at 104,300 to 105,205 GFF4619 Position (kb) 102 103 104Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 101.613 kb on + strandat 101.614 kb on - strandat 101.614 kb on - strandat 101.834 kb on + strand, within GFF4615at 101.835 kb on - strand, within GFF4615at 101.835 kb on - strand, within GFF4615at 101.835 kb on - strand, within GFF4615at 101.955 kb on + strand, within GFF4615at 101.955 kb on + strand, within GFF4615at 102.245 kb on + strand, within GFF4616at 102.246 kb on - strand, within GFF4616at 102.246 kb on - strand, within GFF4616at 102.246 kb on - strand, within GFF4616at 102.272 kb on + strand, within GFF4616at 102.273 kb on - strand, within GFF4616at 102.273 kb on - strand, within GFF4616at 102.273 kb on - strand, within GFF4616at 102.353 kb on + strand, within GFF4616at 102.354 kb on - strand, within GFF4616at 102.354 kb on - strand, within GFF4616at 102.354 kb on - strand, within GFF4616at 102.354 kb on - strand, within GFF4616at 102.612 kb on + strandat 102.613 kb on - strandat 102.812 kb on + strand, within GFF4617at 102.812 kb on + strand, within GFF4617at 102.813 kb on - strand, within GFF4617at 102.813 kb on - strand, within GFF4617at 102.853 kb on + strand, within GFF4617at 102.866 kb on + strand, within GFF4617at 102.888 kb on + strand, within GFF4617at 102.889 kb on - strand, within GFF4617at 102.889 kb on - strand, within GFF4617at 102.996 kb on + strand, within GFF4617at 102.996 kb on + strand, within GFF4617at 102.996 kb on + strand, within GFF4617at 102.996 kb on + strand, within GFF4617at 102.996 kb on + strand, within GFF4617at 102.996 kb on + strand, within GFF4617at 102.997 kb on - strand, within GFF4617at 102.997 kb on - strand, within GFF4617at 102.997 kb on - strand, within GFF4617at 102.997 kb on - strand, within GFF4617at 102.997 kb on - strand, within GFF4617at 102.997 kb on - strand, within GFF4617at 102.997 kb on - strand, within GFF4617at 102.997 kb on - strand, within GFF4617at 103.000 kb on + strand, within GFF4617at 103.000 kb on + strand, within GFF4617at 103.001 kb on - strand, within GFF4617at 103.001 kb on - strand, within GFF4617at 103.001 kb on - strand, within GFF4617at 103.483 kb on + strand, within GFF4617at 103.484 kb on - strand, within GFF4617at 103.484 kb on - strand, within GFF4617at 103.484 kb on - strand, within GFF4617at 103.484 kb on - strand, within GFF4617at 103.506 kb on + strandat 103.506 kb on + strandat 103.506 kb on + strandat 103.506 kb on + strandat 103.506 kb on + strandat 103.506 kb on + strandat 103.507 kb on - strandat 103.563 kb on + strandat 103.563 kb on + strandat 103.563 kb on + strandat 103.585 kb on + strandat 103.585 kb on + strandat 103.585 kb on + strandat 103.586 kb on - strandat 103.586 kb on - strandat 103.586 kb on - strandat 103.586 kb on - strandat 103.605 kb on + strandat 103.605 kb on + strandat 103.631 kb on - strandat 103.632 kb on + strandat 103.634 kb on + strandat 103.634 kb on + strandat 103.634 kb on + strandat 103.635 kb on - strandat 103.635 kb on - strandat 103.635 kb on - strandat 103.640 kb on + strandat 103.689 kb on + strandat 103.690 kb on - strandat 103.742 kb on + strandat 103.743 kb on - strandat 103.984 kb on - strand, within GFF4618at 104.045 kb on + strand, within GFF4618at 104.046 kb on - strand, within GFF4618at 104.046 kb on - strand, within GFF4618at 104.046 kb on - strand, within GFF4618at 104.095 kb on + strand, within GFF4618at 104.095 kb on + strand, within GFF4618at 104.096 kb on - strand, within GFF4618at 104.096 kb on - strand, within GFF4618at 104.096 kb on - strand, within GFF4618at 104.096 kb on - strand, within GFF4618at 104.098 kb on + strand, within GFF4618at 104.098 kb on + strand, within GFF4618at 104.098 kb on + strand, within GFF4618at 104.098 kb on + strand, within GFF4618at 104.098 kb on + strand, within GFF4618at 104.098 kb on + strand, within GFF4618at 104.098 kb on + strand, within GFF4618at 104.099 kb on - strand, within GFF4618at 104.099 kb on - strand, within GFF4618at 104.099 kb on - strand, within GFF4618at 104.099 kb on - strand, within GFF4618at 104.099 kb on - strand, within GFF4618at 104.099 kb on - strand, within GFF4618at 104.099 kb on - strand, within GFF4618at 104.099 kb on - strand, within GFF4618at 104.099 kb on - strand, within GFF4618at 104.102 kb on + strand, within GFF4618at 104.102 kb on + strand, within GFF4618at 104.102 kb on + strand, within GFF4618at 104.102 kb on + strand, within GFF4618at 104.102 kb on + strand, within GFF4618at 104.102 kb on + strand, within GFF4618at 104.102 kb on + strand, within GFF4618at 104.103 kb on - strand, within GFF4618at 104.103 kb on - strand, within GFF4618at 104.103 kb on - strand, within GFF4618at 104.103 kb on - strand, within GFF4618at 104.162 kb on + strandat 104.162 kb on + strandat 104.162 kb on + strandat 104.183 kb on + strandat 104.183 kb on + strandat 104.183 kb on + strandat 104.183 kb on + strandat 104.184 kb on - strandat 104.184 kb on - strandat 104.184 kb on - strandat 104.246 kb on + strandat 104.246 kb on + strandat 104.246 kb on + strandat 104.247 kb on - strandat 104.247 kb on - strandat 104.247 kb on - strandat 104.265 kb on - strandat 104.302 kb on - strandat 104.302 kb on - strandat 104.470 kb on + strand, within GFF4619at 104.471 kb on - strand, within GFF4619at 104.471 kb on - strand, within GFF4619

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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101,613 + +0.8
101,614 - -0.0
101,614 - -0.0
101,834 + GFF4615 0.32 -0.5
101,835 - GFF4615 0.32 -0.6
101,835 - GFF4615 0.32 -1.1
101,835 - GFF4615 0.32 +1.0
101,955 + GFF4615 0.61 -0.2
101,955 + GFF4615 0.61 -0.6
102,245 + GFF4616 0.26 +0.9
102,246 - GFF4616 0.26 -0.8
102,246 - GFF4616 0.26 +0.9
102,246 - GFF4616 0.26 -0.8
102,272 + GFF4616 0.32 -1.2
102,273 - GFF4616 0.32 +2.6
102,273 - GFF4616 0.32 -0.6
102,273 - GFF4616 0.32 -0.2
102,353 + GFF4616 0.48 -0.7
102,354 - GFF4616 0.49 +0.6
102,354 - GFF4616 0.49 -0.4
102,354 - GFF4616 0.49 +0.3
102,354 - GFF4616 0.49 -0.5
102,612 + +0.4
102,613 - +0.6
102,812 + GFF4617 0.21 -3.4
102,812 + GFF4617 0.21 -2.3
102,813 - GFF4617 0.21 -1.6
102,813 - GFF4617 0.21 -0.9
102,853 + GFF4617 0.25 -1.1
102,866 + GFF4617 0.26 -0.4
102,888 + GFF4617 0.28 -1.4
102,889 - GFF4617 0.29 -0.4
102,889 - GFF4617 0.29 -0.4
102,996 + GFF4617 0.39 -0.9
102,996 + GFF4617 0.39 -0.9
102,996 + GFF4617 0.39 +0.0
102,996 + GFF4617 0.39 -0.8
102,996 + GFF4617 0.39 -0.7
102,996 + GFF4617 0.39 -2.1
102,997 - GFF4617 0.40 -1.8
102,997 - GFF4617 0.40 -0.8
102,997 - GFF4617 0.40 -1.8
102,997 - GFF4617 0.40 -2.1
102,997 - GFF4617 0.40 -0.8
102,997 - GFF4617 0.40 -3.3
102,997 - GFF4617 0.40 -1.4
102,997 - GFF4617 0.40 -0.5
103,000 + GFF4617 0.40 -3.0
103,000 + GFF4617 0.40 -0.7
103,001 - GFF4617 0.40 -1.8
103,001 - GFF4617 0.40 -2.4
103,001 - GFF4617 0.40 -2.1
103,483 + GFF4617 0.89 -1.7
103,484 - GFF4617 0.90 -0.3
103,484 - GFF4617 0.90 -1.6
103,484 - GFF4617 0.90 -1.6
103,484 - GFF4617 0.90 -2.6
103,506 + -2.7
103,506 + +0.6
103,506 + -1.0
103,506 + -2.5
103,506 + -1.2
103,506 + -2.7
103,507 - -0.4
103,563 + -2.2
103,563 + -3.0
103,563 + -2.5
103,585 + -3.5
103,585 + -2.2
103,585 + -0.4
103,586 - +0.2
103,586 - -3.2
103,586 - -1.2
103,586 - -1.6
103,605 + +0.5
103,605 + +0.3
103,631 - -1.4
103,632 + -0.4
103,634 + +0.2
103,634 + +0.3
103,634 + +1.9
103,635 - -0.1
103,635 - -1.2
103,635 - +0.3
103,640 + +0.0
103,689 + +0.0
103,690 - +0.7
103,742 + +0.2
103,743 - +0.1
103,984 - GFF4618 0.57 +0.8
104,045 + GFF4618 0.69 +0.6
104,046 - GFF4618 0.69 +1.0
104,046 - GFF4618 0.69 -0.8
104,046 - GFF4618 0.69 +0.8
104,095 + GFF4618 0.79 +0.1
104,095 + GFF4618 0.79 -0.2
104,096 - GFF4618 0.79 -0.4
104,096 - GFF4618 0.79 -0.8
104,096 - GFF4618 0.79 -1.2
104,096 - GFF4618 0.79 -0.7
104,098 + GFF4618 0.79 -0.2
104,098 + GFF4618 0.79 +1.2
104,098 + GFF4618 0.79 +0.5
104,098 + GFF4618 0.79 +0.0
104,098 + GFF4618 0.79 -0.0
104,098 + GFF4618 0.79 +0.6
104,098 + GFF4618 0.79 +0.4
104,099 - GFF4618 0.79 +0.4
104,099 - GFF4618 0.79 -1.4
104,099 - GFF4618 0.79 -0.8
104,099 - GFF4618 0.79 -0.7
104,099 - GFF4618 0.79 -1.1
104,099 - GFF4618 0.79 -0.0
104,099 - GFF4618 0.79 -0.9
104,099 - GFF4618 0.79 +0.0
104,099 - GFF4618 0.79 -0.3
104,102 + GFF4618 0.80 -0.5
104,102 + GFF4618 0.80 +0.3
104,102 + GFF4618 0.80 -1.2
104,102 + GFF4618 0.80 -0.5
104,102 + GFF4618 0.80 -1.1
104,102 + GFF4618 0.80 -0.0
104,102 + GFF4618 0.80 +0.0
104,103 - GFF4618 0.80 +0.5
104,103 - GFF4618 0.80 -0.4
104,103 - GFF4618 0.80 +0.4
104,103 - GFF4618 0.80 -0.5
104,162 + +0.6
104,162 + -0.6
104,162 + +0.7
104,183 + +0.6
104,183 + +0.4
104,183 + +0.4
104,183 + +0.3
104,184 - +0.3
104,184 - -0.3
104,184 - -0.9
104,246 + -2.0
104,246 + +0.0
104,246 + -0.6
104,247 - +0.8
104,247 - +1.4
104,247 - -1.1
104,265 - -0.3
104,302 - -0.6
104,302 - +0.0
104,470 + GFF4619 0.19 +0.3
104,471 - GFF4619 0.19 -0.4
104,471 - GFF4619 0.19 +0.9

Or see this region's nucleotide sequence