Strain Fitness in Pseudomonas sp. DMC3 around GFF4512

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4511 and GFF4512 are separated by 172 nucleotidesGFF4512 and GFF4513 are separated by 9 nucleotidesGFF4513 and GFF4514 are separated by 140 nucleotides GFF4511 - hypothetical protein, at 229,557 to 230,729 GFF4511 GFF4512 - hypothetical protein, at 230,902 to 231,426 GFF4512 GFF4513 - Carbonic anhydrase 2, at 231,436 to 232,080 GFF4513 GFF4514 - hypothetical protein, at 232,221 to 232,628 GFF4514 Position (kb) 230 231 232Strain fitness (log2 ratio) -2 -1 0 1at 229.923 kb on + strand, within GFF4511at 229.923 kb on + strand, within GFF4511at 229.923 kb on + strand, within GFF4511at 229.924 kb on - strand, within GFF4511at 229.924 kb on - strand, within GFF4511at 229.925 kb on + strand, within GFF4511at 229.925 kb on + strand, within GFF4511at 229.925 kb on + strand, within GFF4511at 229.925 kb on + strand, within GFF4511at 229.925 kb on + strand, within GFF4511at 229.925 kb on + strand, within GFF4511at 229.926 kb on - strand, within GFF4511at 229.926 kb on - strand, within GFF4511at 229.926 kb on - strand, within GFF4511at 229.926 kb on - strand, within GFF4511at 229.926 kb on - strand, within GFF4511at 229.926 kb on - strand, within GFF4511at 230.005 kb on - strand, within GFF4511at 230.028 kb on + strand, within GFF4511at 230.028 kb on + strand, within GFF4511at 230.028 kb on + strand, within GFF4511at 230.029 kb on - strand, within GFF4511at 230.176 kb on - strand, within GFF4511at 230.193 kb on + strand, within GFF4511at 230.194 kb on - strand, within GFF4511at 230.295 kb on + strand, within GFF4511at 230.296 kb on - strand, within GFF4511at 230.314 kb on + strand, within GFF4511at 230.385 kb on + strand, within GFF4511at 230.385 kb on + strand, within GFF4511at 230.385 kb on + strand, within GFF4511at 230.385 kb on + strand, within GFF4511at 230.385 kb on + strand, within GFF4511at 230.385 kb on + strand, within GFF4511at 230.385 kb on + strand, within GFF4511at 230.385 kb on + strand, within GFF4511at 230.386 kb on - strand, within GFF4511at 230.415 kb on + strand, within GFF4511at 230.415 kb on + strand, within GFF4511at 230.415 kb on + strand, within GFF4511at 230.415 kb on + strand, within GFF4511at 230.416 kb on - strand, within GFF4511at 230.416 kb on - strand, within GFF4511at 230.418 kb on - strand, within GFF4511at 230.601 kb on + strand, within GFF4511at 230.602 kb on - strand, within GFF4511at 230.602 kb on - strand, within GFF4511at 230.602 kb on - strand, within GFF4511at 230.728 kb on - strandat 230.801 kb on + strandat 230.801 kb on + strandat 230.801 kb on + strandat 230.802 kb on - strandat 230.802 kb on - strandat 230.809 kb on + strandat 230.953 kb on + strandat 231.246 kb on + strand, within GFF4512at 231.302 kb on + strand, within GFF4512at 231.358 kb on + strand, within GFF4512at 231.465 kb on - strandat 231.536 kb on + strand, within GFF4513at 231.536 kb on + strand, within GFF4513at 231.536 kb on + strand, within GFF4513at 231.536 kb on + strand, within GFF4513at 231.536 kb on + strand, within GFF4513at 231.536 kb on + strand, within GFF4513at 231.537 kb on - strand, within GFF4513at 231.537 kb on - strand, within GFF4513at 231.537 kb on - strand, within GFF4513at 231.698 kb on + strand, within GFF4513at 231.701 kb on + strand, within GFF4513at 231.701 kb on + strand, within GFF4513at 231.701 kb on + strand, within GFF4513at 231.701 kb on + strand, within GFF4513at 231.702 kb on - strand, within GFF4513at 231.702 kb on - strand, within GFF4513at 231.702 kb on - strand, within GFF4513at 231.786 kb on - strand, within GFF4513at 231.967 kb on + strand, within GFF4513at 231.967 kb on + strand, within GFF4513at 231.967 kb on + strand, within GFF4513at 231.967 kb on + strand, within GFF4513at 231.967 kb on + strand, within GFF4513at 231.967 kb on + strand, within GFF4513at 231.968 kb on - strand, within GFF4513at 231.968 kb on - strand, within GFF4513at 231.968 kb on - strand, within GFF4513at 231.968 kb on - strand, within GFF4513at 231.968 kb on - strand, within GFF4513at 231.968 kb on - strand, within GFF4513at 231.971 kb on + strand, within GFF4513at 231.972 kb on - strand, within GFF4513at 231.972 kb on - strand, within GFF4513at 231.972 kb on - strand, within GFF4513at 231.972 kb on - strand, within GFF4513at 231.972 kb on - strand, within GFF4513at 232.054 kb on - strandat 232.069 kb on + strandat 232.070 kb on - strandat 232.070 kb on - strandat 232.070 kb on - strandat 232.084 kb on + strandat 232.084 kb on + strandat 232.115 kb on - strandat 232.195 kb on + strandat 232.195 kb on + strandat 232.207 kb on + strandat 232.208 kb on - strandat 232.208 kb on - strandat 232.208 kb on - strandat 232.208 kb on - strandat 232.208 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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229,923 + GFF4511 0.31 -0.9
229,923 + GFF4511 0.31 -0.8
229,923 + GFF4511 0.31 +0.5
229,924 - GFF4511 0.31 +0.7
229,924 - GFF4511 0.31 -1.9
229,925 + GFF4511 0.31 +0.3
229,925 + GFF4511 0.31 +0.1
229,925 + GFF4511 0.31 -0.1
229,925 + GFF4511 0.31 +0.3
229,925 + GFF4511 0.31 -0.2
229,925 + GFF4511 0.31 +1.1
229,926 - GFF4511 0.31 +0.4
229,926 - GFF4511 0.31 +0.0
229,926 - GFF4511 0.31 -1.1
229,926 - GFF4511 0.31 +0.5
229,926 - GFF4511 0.31 +0.7
229,926 - GFF4511 0.31 -1.0
230,005 - GFF4511 0.38 -1.2
230,028 + GFF4511 0.40 +0.9
230,028 + GFF4511 0.40 +1.0
230,028 + GFF4511 0.40 +0.6
230,029 - GFF4511 0.40 -0.4
230,176 - GFF4511 0.53 -0.7
230,193 + GFF4511 0.54 -0.9
230,194 - GFF4511 0.54 -1.2
230,295 + GFF4511 0.63 -0.7
230,296 - GFF4511 0.63 -1.9
230,314 + GFF4511 0.65 -0.3
230,385 + GFF4511 0.71 -0.2
230,385 + GFF4511 0.71 +0.1
230,385 + GFF4511 0.71 +0.1
230,385 + GFF4511 0.71 +1.3
230,385 + GFF4511 0.71 -1.3
230,385 + GFF4511 0.71 +0.3
230,385 + GFF4511 0.71 -0.4
230,385 + GFF4511 0.71 -1.2
230,386 - GFF4511 0.71 -0.3
230,415 + GFF4511 0.73 -1.6
230,415 + GFF4511 0.73 -0.8
230,415 + GFF4511 0.73 +0.1
230,415 + GFF4511 0.73 +1.0
230,416 - GFF4511 0.73 +0.9
230,416 - GFF4511 0.73 -0.6
230,418 - GFF4511 0.73 -0.3
230,601 + GFF4511 0.89 +0.4
230,602 - GFF4511 0.89 +0.3
230,602 - GFF4511 0.89 +0.8
230,602 - GFF4511 0.89 -0.5
230,728 - -0.9
230,801 + +0.7
230,801 + -0.5
230,801 + -0.7
230,802 - -0.2
230,802 - +0.1
230,809 + +0.3
230,953 + -0.1
231,246 + GFF4512 0.66 -1.0
231,302 + GFF4512 0.76 -2.7
231,358 + GFF4512 0.87 +0.3
231,465 - +0.1
231,536 + GFF4513 0.16 -0.7
231,536 + GFF4513 0.16 -1.7
231,536 + GFF4513 0.16 -1.3
231,536 + GFF4513 0.16 -0.6
231,536 + GFF4513 0.16 +0.7
231,536 + GFF4513 0.16 -0.1
231,537 - GFF4513 0.16 -1.0
231,537 - GFF4513 0.16 -2.0
231,537 - GFF4513 0.16 -0.4
231,698 + GFF4513 0.41 +0.1
231,701 + GFF4513 0.41 +0.8
231,701 + GFF4513 0.41 -0.0
231,701 + GFF4513 0.41 -0.1
231,701 + GFF4513 0.41 -0.4
231,702 - GFF4513 0.41 +0.0
231,702 - GFF4513 0.41 -1.3
231,702 - GFF4513 0.41 -0.0
231,786 - GFF4513 0.54 -2.0
231,967 + GFF4513 0.82 +0.7
231,967 + GFF4513 0.82 +0.3
231,967 + GFF4513 0.82 -0.5
231,967 + GFF4513 0.82 +0.8
231,967 + GFF4513 0.82 -0.7
231,967 + GFF4513 0.82 +0.3
231,968 - GFF4513 0.82 -0.2
231,968 - GFF4513 0.82 -0.1
231,968 - GFF4513 0.82 +1.1
231,968 - GFF4513 0.82 +1.0
231,968 - GFF4513 0.82 +0.9
231,968 - GFF4513 0.82 +1.0
231,971 + GFF4513 0.83 -0.7
231,972 - GFF4513 0.83 +0.3
231,972 - GFF4513 0.83 -0.7
231,972 - GFF4513 0.83 +1.3
231,972 - GFF4513 0.83 +1.4
231,972 - GFF4513 0.83 +0.4
232,054 - -0.3
232,069 + +0.9
232,070 - -0.7
232,070 - -0.3
232,070 - +0.3
232,084 + -0.2
232,084 + +0.7
232,115 - -1.9
232,195 + +0.3
232,195 + -1.0
232,207 + -0.6
232,208 - -0.8
232,208 - -0.3
232,208 - -0.6
232,208 - -2.1
232,208 - +1.0

Or see this region's nucleotide sequence