Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4505 and GFF4506 are separated by 73 nucleotides GFF4506 and GFF4507 are separated by 73 nucleotides GFF4507 and GFF4508 are separated by 175 nucleotides
GFF4505 - Glutathione hydrolase proenzyme, at 221,508 to 223,340
GFF4505
GFF4506 - Threonine efflux protein, at 223,414 to 224,046
GFF4506
GFF4507 - hypothetical protein, at 224,120 to 224,719
GFF4507
GFF4508 - Biofilm dispersion protein BdlA, at 224,895 to 226,211
GFF4508
Position (kb) 224
225 Strain fitness (log2 ratio) -2
-1
0
1
2 at 223.342 kb on + strand at 223.345 kb on + strand at 223.345 kb on + strand at 223.346 kb on - strand at 223.377 kb on + strand at 223.400 kb on - strand at 223.451 kb on + strand at 223.451 kb on + strand at 223.451 kb on + strand at 223.451 kb on + strand at 223.451 kb on + strand at 223.452 kb on - strand at 223.452 kb on - strand at 223.452 kb on - strand at 223.452 kb on - strand at 223.452 kb on - strand at 223.452 kb on - strand at 223.452 kb on - strand at 223.496 kb on + strand, within GFF4506 at 223.497 kb on - strand, within GFF4506 at 223.497 kb on - strand, within GFF4506 at 223.501 kb on - strand, within GFF4506 at 223.544 kb on + strand, within GFF4506 at 223.595 kb on - strand, within GFF4506 at 223.662 kb on + strand, within GFF4506 at 223.663 kb on - strand, within GFF4506 at 223.703 kb on + strand, within GFF4506 at 223.703 kb on + strand, within GFF4506 at 223.704 kb on - strand, within GFF4506 at 223.775 kb on + strand, within GFF4506 at 223.775 kb on + strand, within GFF4506 at 223.776 kb on - strand, within GFF4506 at 223.776 kb on - strand, within GFF4506 at 223.784 kb on + strand, within GFF4506 at 223.784 kb on + strand, within GFF4506 at 223.785 kb on - strand, within GFF4506 at 223.785 kb on - strand, within GFF4506 at 223.785 kb on - strand, within GFF4506 at 223.814 kb on + strand, within GFF4506 at 223.814 kb on + strand, within GFF4506 at 223.815 kb on - strand, within GFF4506 at 224.088 kb on + strand at 224.088 kb on + strand at 224.088 kb on + strand at 224.089 kb on - strand at 224.089 kb on - strand at 224.089 kb on - strand at 224.089 kb on - strand at 224.089 kb on - strand at 224.089 kb on - strand at 224.121 kb on + strand at 224.289 kb on + strand, within GFF4507 at 224.289 kb on + strand, within GFF4507 at 224.290 kb on - strand, within GFF4507 at 224.397 kb on + strand, within GFF4507 at 224.398 kb on - strand, within GFF4507 at 224.753 kb on + strand at 225.021 kb on - strand at 225.397 kb on + strand, within GFF4508 at 225.398 kb on - strand, within GFF4508 at 225.398 kb on - strand, within GFF4508 at 225.450 kb on - strand, within GFF4508 at 225.478 kb on + strand, within GFF4508 at 225.478 kb on + strand, within GFF4508 at 225.479 kb on - strand, within GFF4508 at 225.479 kb on - strand, within GFF4508 at 225.512 kb on - strand, within GFF4508 at 225.534 kb on - strand, within GFF4508 at 225.551 kb on + strand, within GFF4508 at 225.625 kb on + strand, within GFF4508 at 225.625 kb on + strand, within GFF4508 at 225.625 kb on + strand, within GFF4508 at 225.626 kb on - strand, within GFF4508 at 225.626 kb on - strand, within GFF4508 at 225.626 kb on - strand, within GFF4508 at 225.626 kb on - strand, within GFF4508 at 225.682 kb on + strand, within GFF4508
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 223,342 + +0.7 223,345 + -0.9 223,345 + +0.7 223,346 - -0.8 223,377 + -0.7 223,400 - +2.2 223,451 + +0.0 223,451 + +0.2 223,451 + +0.5 223,451 + +0.2 223,451 + -0.3 223,452 - +0.4 223,452 - +0.7 223,452 - -0.9 223,452 - +0.3 223,452 - -0.3 223,452 - +0.1 223,452 - -0.6 223,496 + GFF4506 0.13 -0.1 223,497 - GFF4506 0.13 -1.3 223,497 - GFF4506 0.13 +0.2 223,501 - GFF4506 0.14 -0.9 223,544 + GFF4506 0.21 +1.7 223,595 - GFF4506 0.29 +1.7 223,662 + GFF4506 0.39 +0.8 223,663 - GFF4506 0.39 +0.7 223,703 + GFF4506 0.46 +0.7 223,703 + GFF4506 0.46 -0.2 223,704 - GFF4506 0.46 -0.1 223,775 + GFF4506 0.57 -0.2 223,775 + GFF4506 0.57 -1.5 223,776 - GFF4506 0.57 -1.0 223,776 - GFF4506 0.57 +1.2 223,784 + GFF4506 0.58 +0.6 223,784 + GFF4506 0.58 -0.4 223,785 - GFF4506 0.59 +0.9 223,785 - GFF4506 0.59 -0.4 223,785 - GFF4506 0.59 -1.2 223,814 + GFF4506 0.63 +0.4 223,814 + GFF4506 0.63 -0.4 223,815 - GFF4506 0.63 +0.5 224,088 + -0.9 224,088 + -0.4 224,088 + -0.1 224,089 - +0.7 224,089 - -0.6 224,089 - -1.3 224,089 - -1.5 224,089 - -0.1 224,089 - +0.6 224,121 + +0.3 224,289 + GFF4507 0.28 -1.2 224,289 + GFF4507 0.28 -0.7 224,290 - GFF4507 0.28 -1.4 224,397 + GFF4507 0.46 -2.3 224,398 - GFF4507 0.46 -0.0 224,753 + +1.1 225,021 - -2.2 225,397 + GFF4508 0.38 -0.3 225,398 - GFF4508 0.38 -0.5 225,398 - GFF4508 0.38 -0.5 225,450 - GFF4508 0.42 +0.0 225,478 + GFF4508 0.44 -0.7 225,478 + GFF4508 0.44 +0.4 225,479 - GFF4508 0.44 +0.1 225,479 - GFF4508 0.44 +0.1 225,512 - GFF4508 0.47 -0.9 225,534 - GFF4508 0.49 -0.1 225,551 + GFF4508 0.50 -0.3 225,625 + GFF4508 0.55 -0.1 225,625 + GFF4508 0.55 +0.9 225,625 + GFF4508 0.55 +0.1 225,626 - GFF4508 0.56 -0.9 225,626 - GFF4508 0.56 -0.3 225,626 - GFF4508 0.56 -0.3 225,626 - GFF4508 0.56 +1.0 225,682 + GFF4508 0.60 -0.7
Or see this region's nucleotide sequence