Strain Fitness in Pseudomonas sp. DMC3 around GFF4332

Experiment: D-Glucose and D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4331 and GFF4332 are separated by 463 nucleotidesGFF4332 and GFF4333 are separated by 178 nucleotidesGFF4333 and GFF4334 overlap by 13 nucleotides GFF4331 - hypothetical protein, at 45,454 to 46,275 GFF4331 GFF4332 - 2-isopropylmalate synthase, at 46,739 to 48,418 GFF4332 GFF4333 - Omega-amidase YafV, at 48,597 to 49,388 GFF4333 GFF4334 - Methionine aminotransferase, at 49,376 to 50,524 GFF4334 Position (kb) 46 47 48 49Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 45.746 kb on - strand, within GFF4331at 45.957 kb on + strand, within GFF4331at 45.957 kb on + strand, within GFF4331at 45.958 kb on - strand, within GFF4331at 45.958 kb on - strand, within GFF4331at 45.958 kb on - strand, within GFF4331at 46.045 kb on + strand, within GFF4331at 46.045 kb on + strand, within GFF4331at 46.045 kb on + strand, within GFF4331at 46.045 kb on + strand, within GFF4331at 46.046 kb on - strand, within GFF4331at 46.092 kb on + strand, within GFF4331at 46.092 kb on + strand, within GFF4331at 46.110 kb on + strand, within GFF4331at 46.111 kb on - strand, within GFF4331at 46.111 kb on - strand, within GFF4331at 46.203 kb on + strandat 46.277 kb on + strandat 46.277 kb on + strandat 46.277 kb on + strandat 46.277 kb on + strandat 46.277 kb on + strandat 46.277 kb on + strandat 46.277 kb on + strandat 46.278 kb on - strandat 46.278 kb on - strandat 46.278 kb on - strandat 46.278 kb on - strandat 46.278 kb on - strandat 46.332 kb on + strandat 46.333 kb on - strandat 46.385 kb on + strandat 46.385 kb on + strandat 46.385 kb on + strandat 46.472 kb on + strandat 46.770 kb on - strandat 47.126 kb on + strand, within GFF4332at 47.126 kb on + strand, within GFF4332at 47.126 kb on + strand, within GFF4332at 47.126 kb on + strand, within GFF4332at 47.126 kb on + strand, within GFF4332at 47.126 kb on + strand, within GFF4332at 47.126 kb on + strand, within GFF4332at 47.126 kb on + strand, within GFF4332at 47.126 kb on + strand, within GFF4332at 47.225 kb on + strand, within GFF4332at 47.615 kb on + strand, within GFF4332at 47.615 kb on + strand, within GFF4332at 47.615 kb on + strand, within GFF4332at 47.615 kb on + strand, within GFF4332at 47.616 kb on - strand, within GFF4332at 47.616 kb on - strand, within GFF4332at 47.616 kb on - strand, within GFF4332at 47.616 kb on - strand, within GFF4332at 47.616 kb on - strand, within GFF4332at 47.616 kb on - strand, within GFF4332at 47.718 kb on - strand, within GFF4332at 47.906 kb on + strand, within GFF4332at 47.907 kb on - strand, within GFF4332at 47.907 kb on - strand, within GFF4332at 47.925 kb on - strand, within GFF4332at 48.044 kb on + strand, within GFF4332at 48.044 kb on + strand, within GFF4332at 48.044 kb on + strand, within GFF4332at 48.044 kb on + strand, within GFF4332at 48.045 kb on - strand, within GFF4332at 48.066 kb on - strand, within GFF4332at 48.126 kb on + strand, within GFF4332at 48.233 kb on + strand, within GFF4332at 48.281 kb on + strandat 48.282 kb on - strandat 48.282 kb on - strandat 48.649 kb on + strandat 48.755 kb on + strand, within GFF4333at 48.755 kb on + strand, within GFF4333at 48.757 kb on + strand, within GFF4333at 48.805 kb on + strand, within GFF4333at 48.805 kb on + strand, within GFF4333at 48.805 kb on + strand, within GFF4333at 48.806 kb on - strand, within GFF4333at 48.883 kb on + strand, within GFF4333at 48.884 kb on - strand, within GFF4333at 48.884 kb on - strand, within GFF4333at 48.941 kb on - strand, within GFF4333at 49.007 kb on - strand, within GFF4333at 49.051 kb on + strand, within GFF4333at 49.138 kb on - strand, within GFF4333at 49.138 kb on - strand, within GFF4333at 49.388 kb on + strandat 49.388 kb on + strandat 49.388 kb on + strandat 49.389 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
remove
45,746 - GFF4331 0.36 +0.8
45,957 + GFF4331 0.61 +0.8
45,957 + GFF4331 0.61 +0.8
45,958 - GFF4331 0.61 -0.1
45,958 - GFF4331 0.61 +0.8
45,958 - GFF4331 0.61 +0.2
46,045 + GFF4331 0.72 -0.1
46,045 + GFF4331 0.72 -1.2
46,045 + GFF4331 0.72 +0.2
46,045 + GFF4331 0.72 +0.1
46,046 - GFF4331 0.72 -1.0
46,092 + GFF4331 0.78 +0.5
46,092 + GFF4331 0.78 +1.1
46,110 + GFF4331 0.80 +0.1
46,111 - GFF4331 0.80 -0.6
46,111 - GFF4331 0.80 +0.0
46,203 + -0.5
46,277 + -0.2
46,277 + +1.1
46,277 + +0.2
46,277 + -0.2
46,277 + -0.5
46,277 + +1.2
46,277 + +0.2
46,278 - -0.4
46,278 - -0.2
46,278 - -0.3
46,278 - +0.3
46,278 - -2.0
46,332 + +0.6
46,333 - +0.1
46,385 + -0.3
46,385 + +0.4
46,385 + +0.1
46,472 + -0.5
46,770 - -0.3
47,126 + GFF4332 0.23 -0.3
47,126 + GFF4332 0.23 -1.2
47,126 + GFF4332 0.23 -1.2
47,126 + GFF4332 0.23 -2.8
47,126 + GFF4332 0.23 -4.3
47,126 + GFF4332 0.23 -2.7
47,126 + GFF4332 0.23 -3.5
47,126 + GFF4332 0.23 -3.3
47,126 + GFF4332 0.23 -2.5
47,225 + GFF4332 0.29 -2.8
47,615 + GFF4332 0.52 -3.2
47,615 + GFF4332 0.52 -4.2
47,615 + GFF4332 0.52 -2.2
47,615 + GFF4332 0.52 -3.6
47,616 - GFF4332 0.52 -3.9
47,616 - GFF4332 0.52 -1.3
47,616 - GFF4332 0.52 -2.4
47,616 - GFF4332 0.52 -2.3
47,616 - GFF4332 0.52 -2.0
47,616 - GFF4332 0.52 -1.6
47,718 - GFF4332 0.58 -3.1
47,906 + GFF4332 0.69 -2.6
47,907 - GFF4332 0.70 -0.9
47,907 - GFF4332 0.70 -2.7
47,925 - GFF4332 0.71 -3.0
48,044 + GFF4332 0.78 +0.1
48,044 + GFF4332 0.78 -0.7
48,044 + GFF4332 0.78 -1.0
48,044 + GFF4332 0.78 -2.4
48,045 - GFF4332 0.78 -1.6
48,066 - GFF4332 0.79 -0.6
48,126 + GFF4332 0.83 -0.0
48,233 + GFF4332 0.89 +0.3
48,281 + -1.8
48,282 - -2.9
48,282 - -2.8
48,649 + -0.7
48,755 + GFF4333 0.20 -0.6
48,755 + GFF4333 0.20 -2.5
48,757 + GFF4333 0.20 -0.7
48,805 + GFF4333 0.26 -1.5
48,805 + GFF4333 0.26 -0.7
48,805 + GFF4333 0.26 -0.1
48,806 - GFF4333 0.26 -0.7
48,883 + GFF4333 0.36 -0.6
48,884 - GFF4333 0.36 -0.2
48,884 - GFF4333 0.36 +1.4
48,941 - GFF4333 0.43 -0.3
49,007 - GFF4333 0.52 -1.4
49,051 + GFF4333 0.57 -1.2
49,138 - GFF4333 0.68 -2.2
49,138 - GFF4333 0.68 -1.4
49,388 + -1.1
49,388 + +0.3
49,388 + -1.1
49,389 - -1.1

Or see this region's nucleotide sequence