Strain Fitness in Pseudomonas sp. DMC3 around GFF4287

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4286 and GFF4287 are separated by 14 nucleotidesGFF4287 and GFF4288 are separated by 196 nucleotides GFF4286 - hypothetical protein, at 282,754 to 284,706 GFF4286 GFF4287 - hypothetical protein, at 284,721 to 285,413 GFF4287 GFF4288 - hypothetical protein, at 285,610 to 286,320 GFF4288 Position (kb) 284 285 286Strain fitness (log2 ratio) -3 -2 -1 0 1at 283.788 kb on - strand, within GFF4286at 283.788 kb on - strand, within GFF4286at 283.842 kb on + strand, within GFF4286at 283.904 kb on + strand, within GFF4286at 283.962 kb on - strand, within GFF4286at 283.962 kb on - strand, within GFF4286at 283.998 kb on - strand, within GFF4286at 284.171 kb on + strand, within GFF4286at 284.172 kb on - strand, within GFF4286at 284.172 kb on - strand, within GFF4286at 284.172 kb on - strand, within GFF4286at 284.172 kb on - strand, within GFF4286at 284.203 kb on + strand, within GFF4286at 284.204 kb on - strand, within GFF4286at 284.204 kb on - strand, within GFF4286at 284.204 kb on - strand, within GFF4286at 284.204 kb on - strand, within GFF4286at 284.484 kb on - strand, within GFF4286at 284.606 kb on + strandat 284.607 kb on - strandat 284.676 kb on + strandat 284.676 kb on + strandat 284.722 kb on + strandat 284.722 kb on + strandat 284.722 kb on + strandat 284.723 kb on - strandat 284.723 kb on - strandat 284.723 kb on - strandat 284.723 kb on - strandat 284.726 kb on + strandat 284.726 kb on + strandat 284.726 kb on + strandat 284.726 kb on + strandat 284.727 kb on - strandat 284.813 kb on + strand, within GFF4287at 284.836 kb on + strand, within GFF4287at 284.836 kb on + strand, within GFF4287at 284.836 kb on + strand, within GFF4287at 284.837 kb on - strand, within GFF4287at 284.861 kb on - strand, within GFF4287at 284.950 kb on + strand, within GFF4287at 284.950 kb on + strand, within GFF4287at 284.950 kb on + strand, within GFF4287at 284.950 kb on + strand, within GFF4287at 284.950 kb on + strand, within GFF4287at 284.951 kb on - strand, within GFF4287at 284.951 kb on - strand, within GFF4287at 284.951 kb on - strand, within GFF4287at 284.953 kb on + strand, within GFF4287at 284.953 kb on + strand, within GFF4287at 284.954 kb on - strand, within GFF4287at 284.954 kb on - strand, within GFF4287at 284.999 kb on - strand, within GFF4287at 285.049 kb on + strand, within GFF4287at 285.049 kb on + strand, within GFF4287at 285.049 kb on + strand, within GFF4287at 285.050 kb on - strand, within GFF4287at 285.050 kb on - strand, within GFF4287at 285.064 kb on + strand, within GFF4287at 285.119 kb on - strand, within GFF4287at 285.155 kb on - strand, within GFF4287at 285.155 kb on - strand, within GFF4287at 285.406 kb on - strandat 285.533 kb on + strandat 285.533 kb on + strandat 285.552 kb on + strandat 285.553 kb on - strandat 285.564 kb on + strandat 285.564 kb on + strandat 285.564 kb on + strandat 285.565 kb on - strandat 285.565 kb on - strandat 285.565 kb on - strandat 285.565 kb on - strandat 285.565 kb on - strandat 285.565 kb on - strandat 285.565 kb on - strandat 285.584 kb on + strandat 285.594 kb on + strandat 285.595 kb on - strandat 285.595 kb on - strandat 285.840 kb on + strand, within GFF4288at 285.895 kb on + strand, within GFF4288at 285.896 kb on - strand, within GFF4288at 285.983 kb on - strand, within GFF4288at 285.983 kb on - strand, within GFF4288at 286.012 kb on + strand, within GFF4288at 286.012 kb on + strand, within GFF4288at 286.012 kb on + strand, within GFF4288at 286.012 kb on + strand, within GFF4288at 286.057 kb on + strand, within GFF4288at 286.058 kb on - strand, within GFF4288at 286.058 kb on - strand, within GFF4288at 286.058 kb on - strand, within GFF4288at 286.058 kb on - strand, within GFF4288at 286.215 kb on - strand, within GFF4288at 286.215 kb on - strand, within GFF4288at 286.321 kb on + strandat 286.321 kb on + strandat 286.322 kb on - strandat 286.328 kb on + strandat 286.328 kb on + strandat 286.329 kb on - strandat 286.346 kb on + strandat 286.346 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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283,788 - GFF4286 0.53 +0.1
283,788 - GFF4286 0.53 +0.3
283,842 + GFF4286 0.56 +1.1
283,904 + GFF4286 0.59 +0.1
283,962 - GFF4286 0.62 -0.6
283,962 - GFF4286 0.62 -0.4
283,998 - GFF4286 0.64 +0.1
284,171 + GFF4286 0.73 +0.4
284,172 - GFF4286 0.73 -0.3
284,172 - GFF4286 0.73 -0.7
284,172 - GFF4286 0.73 -0.1
284,172 - GFF4286 0.73 +0.3
284,203 + GFF4286 0.74 +0.0
284,204 - GFF4286 0.74 +0.9
284,204 - GFF4286 0.74 +0.3
284,204 - GFF4286 0.74 +1.4
284,204 - GFF4286 0.74 +0.1
284,484 - GFF4286 0.89 -0.9
284,606 + -0.5
284,607 - +0.0
284,676 + -1.3
284,676 + -0.3
284,722 + +0.3
284,722 + -1.0
284,722 + -0.5
284,723 - -0.3
284,723 - +0.9
284,723 - +0.7
284,723 - +1.4
284,726 + -1.3
284,726 + -1.3
284,726 + +0.5
284,726 + -0.3
284,727 - +0.5
284,813 + GFF4287 0.13 -1.7
284,836 + GFF4287 0.17 -1.4
284,836 + GFF4287 0.17 -3.0
284,836 + GFF4287 0.17 -1.5
284,837 - GFF4287 0.17 -3.0
284,861 - GFF4287 0.20 -1.1
284,950 + GFF4287 0.33 -3.0
284,950 + GFF4287 0.33 -3.2
284,950 + GFF4287 0.33 -0.7
284,950 + GFF4287 0.33 -0.1
284,950 + GFF4287 0.33 -2.4
284,951 - GFF4287 0.33 -2.0
284,951 - GFF4287 0.33 -0.9
284,951 - GFF4287 0.33 -2.4
284,953 + GFF4287 0.33 -2.4
284,953 + GFF4287 0.33 -1.7
284,954 - GFF4287 0.34 -1.0
284,954 - GFF4287 0.34 -2.0
284,999 - GFF4287 0.40 -0.4
285,049 + GFF4287 0.47 -0.3
285,049 + GFF4287 0.47 -2.0
285,049 + GFF4287 0.47 +1.2
285,050 - GFF4287 0.47 -0.6
285,050 - GFF4287 0.47 -2.4
285,064 + GFF4287 0.49 -2.1
285,119 - GFF4287 0.57 -3.4
285,155 - GFF4287 0.63 -2.7
285,155 - GFF4287 0.63 -1.9
285,406 - +0.8
285,533 + -0.3
285,533 + -0.1
285,552 + -0.5
285,553 - +0.1
285,564 + +0.1
285,564 + -1.1
285,564 + +1.1
285,565 - -0.4
285,565 - -0.4
285,565 - +0.5
285,565 - -2.2
285,565 - -0.9
285,565 - -1.5
285,565 - -2.0
285,584 + -0.5
285,594 + +1.0
285,595 - +0.4
285,595 - +1.1
285,840 + GFF4288 0.32 +0.6
285,895 + GFF4288 0.40 -1.4
285,896 - GFF4288 0.40 -0.4
285,983 - GFF4288 0.52 +1.3
285,983 - GFF4288 0.52 -0.9
286,012 + GFF4288 0.57 -3.4
286,012 + GFF4288 0.57 -0.3
286,012 + GFF4288 0.57 -1.7
286,012 + GFF4288 0.57 -0.0
286,057 + GFF4288 0.63 -1.4
286,058 - GFF4288 0.63 -1.1
286,058 - GFF4288 0.63 -0.3
286,058 - GFF4288 0.63 +1.1
286,058 - GFF4288 0.63 +0.7
286,215 - GFF4288 0.85 -0.0
286,215 - GFF4288 0.85 +0.4
286,321 + -2.4
286,321 + +0.4
286,322 - -0.8
286,328 + -0.1
286,328 + +0.2
286,329 - -0.8
286,346 + -0.1
286,346 + -0.8

Or see this region's nucleotide sequence