Strain Fitness in Pseudomonas sp. DMC3 around GFF418

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF416 and GFF417 are separated by 12 nucleotidesGFF417 and GFF418 are separated by 168 nucleotidesGFF418 and GFF419 are separated by 57 nucleotides GFF416 - hypothetical protein, at 457,576 to 458,439 GFF416 GFF417 - Guanylate kinase, at 458,452 to 459,072 GFF417 GFF418 - DNA-directed RNA polymerase subunit omega, at 459,241 to 459,504 GFF418 GFF419 - Bifunctional (p)ppGpp synthase/hydrolase SpoT, at 459,562 to 461,667 GFF419 Position (kb) 459 460Strain fitness (log2 ratio) -2 -1 0 1 2at 458.430 kb on + strandat 458.430 kb on + strandat 458.437 kb on + strandat 459.105 kb on + strandat 459.106 kb on - strandat 459.216 kb on + strandat 459.217 kb on - strandat 459.269 kb on + strand, within GFF418at 459.269 kb on + strand, within GFF418at 459.309 kb on + strand, within GFF418at 459.309 kb on + strand, within GFF418at 459.421 kb on + strand, within GFF418at 459.422 kb on - strand, within GFF418at 459.422 kb on - strand, within GFF418at 459.508 kb on + strandat 459.523 kb on + strandat 459.523 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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458,430 + +0.6
458,430 + +0.3
458,437 + -1.3
459,105 + +2.0
459,106 - -0.4
459,216 + -1.4
459,217 - -1.2
459,269 + GFF418 0.11 -0.8
459,269 + GFF418 0.11 -1.8
459,309 + GFF418 0.26 -0.2
459,309 + GFF418 0.26 -1.2
459,421 + GFF418 0.68 +0.8
459,422 - GFF418 0.69 -0.2
459,422 - GFF418 0.69 -0.2
459,508 + -0.2
459,523 + +1.8
459,523 + +0.8

Or see this region's nucleotide sequence