Strain Fitness in Pseudomonas sp. DMC3 around GFF4098

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4096 and GFF4097 are separated by 103 nucleotidesGFF4097 and GFF4098 are separated by 0 nucleotidesGFF4098 and GFF4099 overlap by 1 nucleotidesGFF4099 and GFF4100 are separated by 270 nucleotides GFF4096 - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino] imidazole-4-carboxamide isomerase, at 51,961 to 52,698 GFF4096 GFF4097 - hypothetical protein, at 52,802 to 53,062 GFF4097 GFF4098 - Imidazole glycerol phosphate synthase subunit HisH, at 53,063 to 53,701 GFF4098 GFF4099 - Histidine biosynthesis bifunctional protein HisB, at 53,701 to 54,294 GFF4099 GFF4100 - hypothetical protein, at 54,565 to 56,229 GFF4100 Position (kb) 53 54Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 52.095 kb on + strand, within GFF4096at 52.159 kb on + strand, within GFF4096at 52.160 kb on - strand, within GFF4096at 52.400 kb on + strand, within GFF4096at 52.400 kb on + strand, within GFF4096at 52.421 kb on + strand, within GFF4096at 52.421 kb on + strand, within GFF4096at 52.422 kb on - strand, within GFF4096at 52.422 kb on - strand, within GFF4096at 52.422 kb on - strand, within GFF4096at 52.654 kb on + strandat 52.655 kb on - strandat 52.655 kb on - strandat 52.738 kb on + strandat 52.764 kb on - strandat 52.890 kb on + strand, within GFF4097at 52.890 kb on + strand, within GFF4097at 52.890 kb on + strand, within GFF4097at 52.890 kb on + strand, within GFF4097at 52.890 kb on + strand, within GFF4097at 52.890 kb on + strand, within GFF4097at 52.890 kb on + strand, within GFF4097at 52.891 kb on - strand, within GFF4097at 52.891 kb on - strand, within GFF4097at 52.891 kb on - strand, within GFF4097at 52.891 kb on - strand, within GFF4097at 52.893 kb on + strand, within GFF4097at 52.894 kb on - strand, within GFF4097at 52.894 kb on - strand, within GFF4097at 52.894 kb on - strand, within GFF4097at 53.064 kb on + strandat 53.065 kb on - strandat 53.065 kb on - strandat 53.191 kb on - strand, within GFF4098at 53.235 kb on + strand, within GFF4098at 53.235 kb on + strand, within GFF4098at 53.235 kb on + strand, within GFF4098at 53.235 kb on + strand, within GFF4098at 53.235 kb on + strand, within GFF4098at 53.235 kb on + strand, within GFF4098at 53.235 kb on + strand, within GFF4098at 53.236 kb on - strand, within GFF4098at 53.236 kb on - strand, within GFF4098at 53.236 kb on - strand, within GFF4098at 53.236 kb on - strand, within GFF4098at 53.236 kb on - strand, within GFF4098at 53.236 kb on - strand, within GFF4098at 53.236 kb on - strand, within GFF4098at 53.236 kb on - strand, within GFF4098at 53.238 kb on + strand, within GFF4098at 53.238 kb on + strand, within GFF4098at 53.238 kb on + strand, within GFF4098at 53.238 kb on + strand, within GFF4098at 53.239 kb on - strand, within GFF4098at 53.239 kb on - strand, within GFF4098at 53.239 kb on - strand, within GFF4098at 53.239 kb on - strand, within GFF4098at 53.239 kb on - strand, within GFF4098at 53.253 kb on + strand, within GFF4098at 53.254 kb on - strand, within GFF4098at 53.568 kb on - strand, within GFF4098at 53.568 kb on - strand, within GFF4098at 53.702 kb on + strandat 53.703 kb on - strandat 53.927 kb on + strand, within GFF4099at 54.005 kb on + strand, within GFF4099at 54.005 kb on + strand, within GFF4099at 54.005 kb on + strand, within GFF4099at 54.005 kb on + strand, within GFF4099at 54.005 kb on + strand, within GFF4099at 54.005 kb on + strand, within GFF4099at 54.006 kb on - strand, within GFF4099at 54.006 kb on - strand, within GFF4099at 54.006 kb on - strand, within GFF4099at 54.006 kb on - strand, within GFF4099at 54.006 kb on - strand, within GFF4099at 54.076 kb on - strand, within GFF4099at 54.093 kb on + strand, within GFF4099at 54.093 kb on + strand, within GFF4099at 54.093 kb on + strand, within GFF4099at 54.093 kb on + strand, within GFF4099at 54.094 kb on - strand, within GFF4099at 54.094 kb on - strand, within GFF4099at 54.094 kb on - strand, within GFF4099at 54.190 kb on + strand, within GFF4099at 54.190 kb on + strand, within GFF4099at 54.190 kb on + strand, within GFF4099at 54.191 kb on - strand, within GFF4099at 54.283 kb on - strandat 54.283 kb on - strandat 54.283 kb on - strandat 54.337 kb on + strandat 54.337 kb on + strandat 54.337 kb on + strandat 54.337 kb on + strandat 54.337 kb on + strandat 54.338 kb on - strandat 54.338 kb on - strandat 54.338 kb on - strandat 54.387 kb on + strandat 54.421 kb on + strandat 54.421 kb on + strandat 54.421 kb on + strandat 54.421 kb on + strandat 54.422 kb on - strandat 54.422 kb on - strandat 54.422 kb on - strandat 54.422 kb on - strandat 54.422 kb on - strandat 54.422 kb on - strandat 54.556 kb on + strandat 54.556 kb on + strandat 54.556 kb on + strandat 54.556 kb on + strandat 54.566 kb on + strandat 54.577 kb on + strandat 54.578 kb on - strandat 54.625 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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52,095 + GFF4096 0.18 -2.5
52,159 + GFF4096 0.27 -1.7
52,160 - GFF4096 0.27 -0.3
52,400 + GFF4096 0.59 -2.5
52,400 + GFF4096 0.59 -0.9
52,421 + GFF4096 0.62 -2.7
52,421 + GFF4096 0.62 -4.2
52,422 - GFF4096 0.62 -2.0
52,422 - GFF4096 0.62 -1.9
52,422 - GFF4096 0.62 -3.3
52,654 + -3.0
52,655 - -3.1
52,655 - -0.9
52,738 + -2.9
52,764 - +0.7
52,890 + GFF4097 0.34 -2.0
52,890 + GFF4097 0.34 -2.3
52,890 + GFF4097 0.34 -2.7
52,890 + GFF4097 0.34 -2.5
52,890 + GFF4097 0.34 -2.4
52,890 + GFF4097 0.34 -1.4
52,890 + GFF4097 0.34 -0.7
52,891 - GFF4097 0.34 +0.9
52,891 - GFF4097 0.34 +0.5
52,891 - GFF4097 0.34 +0.1
52,891 - GFF4097 0.34 -0.1
52,893 + GFF4097 0.35 -1.6
52,894 - GFF4097 0.35 -0.4
52,894 - GFF4097 0.35 +0.9
52,894 - GFF4097 0.35 -0.9
53,064 + -0.3
53,065 - +1.4
53,065 - -0.0
53,191 - GFF4098 0.20 -0.9
53,235 + GFF4098 0.27 -3.8
53,235 + GFF4098 0.27 -3.0
53,235 + GFF4098 0.27 -3.4
53,235 + GFF4098 0.27 -2.9
53,235 + GFF4098 0.27 -2.9
53,235 + GFF4098 0.27 -3.4
53,235 + GFF4098 0.27 -1.7
53,236 - GFF4098 0.27 -4.2
53,236 - GFF4098 0.27 -0.6
53,236 - GFF4098 0.27 -1.6
53,236 - GFF4098 0.27 -3.4
53,236 - GFF4098 0.27 -1.1
53,236 - GFF4098 0.27 -1.1
53,236 - GFF4098 0.27 -0.3
53,236 - GFF4098 0.27 -2.9
53,238 + GFF4098 0.27 -3.1
53,238 + GFF4098 0.27 -2.5
53,238 + GFF4098 0.27 -1.1
53,238 + GFF4098 0.27 -2.4
53,239 - GFF4098 0.28 -0.9
53,239 - GFF4098 0.28 -2.2
53,239 - GFF4098 0.28 -2.5
53,239 - GFF4098 0.28 -3.4
53,239 - GFF4098 0.28 -2.2
53,253 + GFF4098 0.30 -3.2
53,254 - GFF4098 0.30 -2.0
53,568 - GFF4098 0.79 -0.5
53,568 - GFF4098 0.79 -2.8
53,702 + -1.6
53,703 - -0.9
53,927 + GFF4099 0.38 -3.1
54,005 + GFF4099 0.51 -3.6
54,005 + GFF4099 0.51 -3.7
54,005 + GFF4099 0.51 -3.2
54,005 + GFF4099 0.51 -2.4
54,005 + GFF4099 0.51 -2.4
54,005 + GFF4099 0.51 -2.4
54,006 - GFF4099 0.51 -0.9
54,006 - GFF4099 0.51 -3.7
54,006 - GFF4099 0.51 -2.0
54,006 - GFF4099 0.51 -2.1
54,006 - GFF4099 0.51 -2.7
54,076 - GFF4099 0.63 -3.0
54,093 + GFF4099 0.66 -0.9
54,093 + GFF4099 0.66 -2.4
54,093 + GFF4099 0.66 -3.1
54,093 + GFF4099 0.66 -1.5
54,094 - GFF4099 0.66 -3.6
54,094 - GFF4099 0.66 -3.4
54,094 - GFF4099 0.66 -2.9
54,190 + GFF4099 0.82 -2.1
54,190 + GFF4099 0.82 -3.7
54,190 + GFF4099 0.82 -3.7
54,191 - GFF4099 0.82 -3.2
54,283 - -1.3
54,283 - -0.6
54,283 - -3.1
54,337 + -0.5
54,337 + -0.8
54,337 + -1.3
54,337 + -0.0
54,337 + -0.0
54,338 - +0.3
54,338 - -0.0
54,338 - -0.4
54,387 + -0.4
54,421 + +0.1
54,421 + +0.6
54,421 + -0.2
54,421 + -0.9
54,422 - +1.1
54,422 - +0.0
54,422 - +0.5
54,422 - -0.4
54,422 - -0.9
54,422 - -0.3
54,556 + -1.4
54,556 + +0.4
54,556 + +1.2
54,556 + +0.7
54,566 + +0.2
54,577 + -0.3
54,578 - -0.6
54,625 - -0.1

Or see this region's nucleotide sequence