Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4080 and GFF4081 overlap by 4 nucleotides GFF4081 and GFF4082 are separated by 619 nucleotides
GFF4080 - Sensory histidine kinase/phosphatase NtrB, at 33,446 to 34,531
GFF4080
GFF4081 - DNA-binding transcriptional regulator NtrC, at 34,528 to 35,964
GFF4081
GFF4082 - hypothetical protein, at 36,584 to 39,055
GFF4082
Position (kb) 34
35
36 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 33.533 kb on + strand at 33.534 kb on - strand at 33.534 kb on - strand at 33.725 kb on + strand, within GFF4080 at 33.954 kb on - strand, within GFF4080 at 34.125 kb on - strand, within GFF4080 at 34.146 kb on + strand, within GFF4080 at 34.146 kb on + strand, within GFF4080 at 34.147 kb on - strand, within GFF4080 at 34.536 kb on + strand at 34.572 kb on + strand at 34.572 kb on + strand at 34.573 kb on - strand at 34.573 kb on - strand at 34.810 kb on + strand, within GFF4081 at 34.811 kb on - strand, within GFF4081 at 34.811 kb on - strand, within GFF4081 at 35.314 kb on + strand, within GFF4081 at 35.351 kb on + strand, within GFF4081 at 35.351 kb on + strand, within GFF4081 at 35.351 kb on + strand, within GFF4081 at 35.351 kb on + strand, within GFF4081 at 35.351 kb on + strand, within GFF4081 at 35.351 kb on + strand, within GFF4081 at 35.351 kb on + strand, within GFF4081 at 35.351 kb on + strand, within GFF4081 at 35.351 kb on + strand, within GFF4081 at 35.351 kb on + strand, within GFF4081 at 35.351 kb on + strand, within GFF4081 at 35.351 kb on + strand, within GFF4081 at 35.351 kb on + strand, within GFF4081 at 35.352 kb on - strand, within GFF4081 at 35.352 kb on - strand, within GFF4081 at 35.352 kb on - strand, within GFF4081 at 35.352 kb on - strand, within GFF4081 at 35.352 kb on - strand, within GFF4081 at 35.352 kb on - strand, within GFF4081 at 35.352 kb on - strand, within GFF4081 at 35.569 kb on + strand, within GFF4081 at 35.983 kb on + strand at 36.079 kb on + strand at 36.080 kb on - strand at 36.080 kb on - strand at 36.080 kb on - strand at 36.094 kb on + strand at 36.336 kb on + strand at 36.337 kb on - strand at 36.337 kb on - strand at 36.340 kb on + strand at 36.341 kb on - strand at 36.410 kb on + strand at 36.410 kb on + strand at 36.410 kb on + strand at 36.410 kb on + strand at 36.411 kb on - strand at 36.411 kb on - strand at 36.461 kb on + strand at 36.487 kb on + strand at 36.487 kb on + strand at 36.488 kb on - strand at 36.536 kb on + strand at 36.564 kb on - strand at 36.564 kb on - strand at 36.564 kb on - strand at 36.653 kb on + strand at 36.653 kb on + strand at 36.653 kb on + strand at 36.653 kb on + strand at 36.654 kb on - strand at 36.654 kb on - strand at 36.654 kb on - strand at 36.654 kb on - strand at 36.654 kb on - strand at 36.709 kb on + strand at 36.709 kb on + strand at 36.710 kb on - strand at 36.710 kb on - strand at 36.710 kb on - strand at 36.735 kb on + strand at 36.814 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 33,533 + -2.4 33,534 - -2.1 33,534 - -2.5 33,725 + GFF4080 0.26 -1.6 33,954 - GFF4080 0.47 -1.4 34,125 - GFF4080 0.63 -1.7 34,146 + GFF4080 0.64 -1.3 34,146 + GFF4080 0.64 -3.2 34,147 - GFF4080 0.65 -2.4 34,536 + -3.2 34,572 + -1.1 34,572 + -0.3 34,573 - -1.3 34,573 - -3.4 34,810 + GFF4081 0.20 -1.4 34,811 - GFF4081 0.20 -2.4 34,811 - GFF4081 0.20 -3.1 35,314 + GFF4081 0.55 -1.7 35,351 + GFF4081 0.57 -2.9 35,351 + GFF4081 0.57 -2.0 35,351 + GFF4081 0.57 -3.9 35,351 + GFF4081 0.57 -4.2 35,351 + GFF4081 0.57 -1.1 35,351 + GFF4081 0.57 -2.6 35,351 + GFF4081 0.57 -3.2 35,351 + GFF4081 0.57 -1.1 35,351 + GFF4081 0.57 -2.5 35,351 + GFF4081 0.57 -1.0 35,351 + GFF4081 0.57 -3.4 35,351 + GFF4081 0.57 -1.1 35,351 + GFF4081 0.57 -3.8 35,352 - GFF4081 0.57 -3.2 35,352 - GFF4081 0.57 -2.0 35,352 - GFF4081 0.57 -2.5 35,352 - GFF4081 0.57 -1.9 35,352 - GFF4081 0.57 -1.6 35,352 - GFF4081 0.57 -2.7 35,352 - GFF4081 0.57 -1.1 35,569 + GFF4081 0.72 -2.8 35,983 + -0.2 36,079 + -0.1 36,080 - +2.1 36,080 - +0.1 36,080 - -0.1 36,094 + +0.1 36,336 + +1.0 36,337 - +1.0 36,337 - -0.5 36,340 + -0.3 36,341 - -0.1 36,410 + -1.2 36,410 + +1.7 36,410 + +0.5 36,410 + -2.2 36,411 - -0.4 36,411 - +0.3 36,461 + -0.7 36,487 + -0.3 36,487 + -2.4 36,488 - +1.3 36,536 + -0.5 36,564 - -0.8 36,564 - +0.3 36,564 - -0.7 36,653 + +0.3 36,653 + -0.3 36,653 + -0.1 36,653 + -0.1 36,654 - +0.2 36,654 - +0.3 36,654 - +0.2 36,654 - -0.2 36,654 - -0.9 36,709 + +2.3 36,709 + -0.1 36,710 - -0.3 36,710 - -0.3 36,710 - -0.3 36,735 + -1.1 36,814 + -0.8
Or see this region's nucleotide sequence