Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4078 and GFF4079 overlap by 4 nucleotides GFF4079 and GFF4080 are separated by 230 nucleotides GFF4080 and GFF4081 overlap by 4 nucleotides
GFF4078 - hypothetical protein, at 32,083 to 32,595
GFF4078
GFF4079 - hypothetical protein, at 32,592 to 33,215
GFF4079
GFF4080 - Sensory histidine kinase/phosphatase NtrB, at 33,446 to 34,531
GFF4080
GFF4081 - DNA-binding transcriptional regulator NtrC, at 34,528 to 35,964
GFF4081
Position (kb) 33
34
35 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 32.586 kb on + strand at 32.586 kb on + strand at 32.586 kb on + strand at 32.587 kb on - strand at 32.587 kb on - strand at 32.657 kb on + strand, within GFF4079 at 32.658 kb on - strand, within GFF4079 at 32.658 kb on - strand, within GFF4079 at 32.661 kb on + strand, within GFF4079 at 32.662 kb on - strand, within GFF4079 at 32.662 kb on - strand, within GFF4079 at 32.662 kb on - strand, within GFF4079 at 32.662 kb on - strand, within GFF4079 at 32.662 kb on - strand, within GFF4079 at 32.817 kb on + strand, within GFF4079 at 32.855 kb on + strand, within GFF4079 at 32.855 kb on + strand, within GFF4079 at 32.855 kb on + strand, within GFF4079 at 32.855 kb on + strand, within GFF4079 at 32.856 kb on - strand, within GFF4079 at 32.856 kb on - strand, within GFF4079 at 32.856 kb on - strand, within GFF4079 at 33.050 kb on + strand, within GFF4079 at 33.141 kb on + strand, within GFF4079 at 33.141 kb on + strand, within GFF4079 at 33.141 kb on + strand, within GFF4079 at 33.141 kb on + strand, within GFF4079 at 33.142 kb on - strand, within GFF4079 at 33.142 kb on - strand, within GFF4079 at 33.142 kb on - strand, within GFF4079 at 33.142 kb on - strand, within GFF4079 at 33.213 kb on + strand at 33.213 kb on + strand at 33.214 kb on - strand at 33.214 kb on - strand at 33.319 kb on + strand at 33.353 kb on - strand at 33.454 kb on - strand at 33.463 kb on + strand at 33.463 kb on + strand at 33.464 kb on - strand at 33.464 kb on - strand at 33.465 kb on + strand at 33.465 kb on + strand at 33.465 kb on + strand at 33.465 kb on + strand at 33.465 kb on + strand at 33.466 kb on - strand at 33.466 kb on - strand at 33.466 kb on - strand at 33.466 kb on - strand at 33.466 kb on - strand at 33.533 kb on + strand at 33.534 kb on - strand at 33.534 kb on - strand at 33.725 kb on + strand, within GFF4080 at 33.954 kb on - strand, within GFF4080 at 34.125 kb on - strand, within GFF4080 at 34.146 kb on + strand, within GFF4080 at 34.146 kb on + strand, within GFF4080 at 34.147 kb on - strand, within GFF4080 at 34.536 kb on + strand at 34.572 kb on + strand at 34.572 kb on + strand at 34.573 kb on - strand at 34.573 kb on - strand at 34.810 kb on + strand, within GFF4081 at 34.811 kb on - strand, within GFF4081 at 34.811 kb on - strand, within GFF4081 at 35.314 kb on + strand, within GFF4081 at 35.351 kb on + strand, within GFF4081 at 35.351 kb on + strand, within GFF4081 at 35.351 kb on + strand, within GFF4081 at 35.351 kb on + strand, within GFF4081 at 35.351 kb on + strand, within GFF4081 at 35.351 kb on + strand, within GFF4081 at 35.351 kb on + strand, within GFF4081 at 35.351 kb on + strand, within GFF4081 at 35.351 kb on + strand, within GFF4081 at 35.351 kb on + strand, within GFF4081 at 35.351 kb on + strand, within GFF4081 at 35.351 kb on + strand, within GFF4081 at 35.351 kb on + strand, within GFF4081 at 35.352 kb on - strand, within GFF4081 at 35.352 kb on - strand, within GFF4081 at 35.352 kb on - strand, within GFF4081 at 35.352 kb on - strand, within GFF4081 at 35.352 kb on - strand, within GFF4081 at 35.352 kb on - strand, within GFF4081 at 35.352 kb on - strand, within GFF4081
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 32,586 + +0.5 32,586 + -0.6 32,586 + -0.3 32,587 - -1.0 32,587 - +0.1 32,657 + GFF4079 0.10 +0.1 32,658 - GFF4079 0.11 -0.4 32,658 - GFF4079 0.11 -0.4 32,661 + GFF4079 0.11 +0.4 32,662 - GFF4079 0.11 -0.4 32,662 - GFF4079 0.11 -1.4 32,662 - GFF4079 0.11 -0.4 32,662 - GFF4079 0.11 -0.8 32,662 - GFF4079 0.11 +0.1 32,817 + GFF4079 0.36 +0.9 32,855 + GFF4079 0.42 +1.2 32,855 + GFF4079 0.42 -0.4 32,855 + GFF4079 0.42 +1.9 32,855 + GFF4079 0.42 -0.1 32,856 - GFF4079 0.42 -0.9 32,856 - GFF4079 0.42 -0.4 32,856 - GFF4079 0.42 +0.6 33,050 + GFF4079 0.73 -0.3 33,141 + GFF4079 0.88 -0.6 33,141 + GFF4079 0.88 -0.1 33,141 + GFF4079 0.88 +0.1 33,141 + GFF4079 0.88 +2.1 33,142 - GFF4079 0.88 -1.0 33,142 - GFF4079 0.88 +0.6 33,142 - GFF4079 0.88 -0.5 33,142 - GFF4079 0.88 -1.4 33,213 + +1.3 33,213 + +0.1 33,214 - -0.0 33,214 - -0.8 33,319 + -0.4 33,353 - -0.8 33,454 - -3.0 33,463 + -0.3 33,463 + -0.6 33,464 - -2.5 33,464 - -1.7 33,465 + -2.9 33,465 + -1.6 33,465 + -2.8 33,465 + -3.0 33,465 + -3.1 33,466 - -1.6 33,466 - +0.1 33,466 - -3.5 33,466 - -4.1 33,466 - -2.9 33,533 + -2.4 33,534 - -2.1 33,534 - -2.5 33,725 + GFF4080 0.26 -1.6 33,954 - GFF4080 0.47 -1.4 34,125 - GFF4080 0.63 -1.7 34,146 + GFF4080 0.64 -1.3 34,146 + GFF4080 0.64 -3.2 34,147 - GFF4080 0.65 -2.4 34,536 + -3.2 34,572 + -1.1 34,572 + -0.3 34,573 - -1.3 34,573 - -3.4 34,810 + GFF4081 0.20 -1.4 34,811 - GFF4081 0.20 -2.4 34,811 - GFF4081 0.20 -3.1 35,314 + GFF4081 0.55 -1.7 35,351 + GFF4081 0.57 -2.9 35,351 + GFF4081 0.57 -2.0 35,351 + GFF4081 0.57 -3.9 35,351 + GFF4081 0.57 -4.2 35,351 + GFF4081 0.57 -1.1 35,351 + GFF4081 0.57 -2.6 35,351 + GFF4081 0.57 -3.2 35,351 + GFF4081 0.57 -1.1 35,351 + GFF4081 0.57 -2.5 35,351 + GFF4081 0.57 -1.0 35,351 + GFF4081 0.57 -3.4 35,351 + GFF4081 0.57 -1.1 35,351 + GFF4081 0.57 -3.8 35,352 - GFF4081 0.57 -3.2 35,352 - GFF4081 0.57 -2.0 35,352 - GFF4081 0.57 -2.5 35,352 - GFF4081 0.57 -1.9 35,352 - GFF4081 0.57 -1.6 35,352 - GFF4081 0.57 -2.7 35,352 - GFF4081 0.57 -1.1
Or see this region's nucleotide sequence