Strain Fitness in Pseudomonas sp. DMC3 around GFF4051

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4050 and GFF4051 are separated by 2 nucleotidesGFF4051 and GFF4052 are separated by 46 nucleotides GFF4050 - Acetolactate synthase isozyme 3 large subunit, at 314,961 to 316,685 GFF4050 GFF4051 - Acetolactate synthase isozyme 3 small subunit, at 316,688 to 317,179 GFF4051 GFF4052 - Ketol-acid reductoisomerase (NADP(+)), at 317,226 to 318,242 GFF4052 Position (kb) 316 317 318Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 315.750 kb on + strand, within GFF4050at 315.750 kb on + strand, within GFF4050at 315.751 kb on - strand, within GFF4050at 315.751 kb on - strand, within GFF4050at 315.751 kb on - strand, within GFF4050at 315.751 kb on - strand, within GFF4050at 315.751 kb on - strand, within GFF4050at 315.752 kb on + strand, within GFF4050at 316.179 kb on + strand, within GFF4050at 316.179 kb on + strand, within GFF4050at 316.180 kb on - strand, within GFF4050at 316.182 kb on + strand, within GFF4050at 316.182 kb on + strand, within GFF4050at 316.182 kb on + strand, within GFF4050at 316.182 kb on + strand, within GFF4050at 316.183 kb on - strand, within GFF4050at 316.183 kb on - strand, within GFF4050at 316.183 kb on - strand, within GFF4050at 316.183 kb on - strand, within GFF4050at 316.316 kb on + strand, within GFF4050at 316.316 kb on + strand, within GFF4050at 316.356 kb on + strand, within GFF4050at 316.432 kb on - strand, within GFF4050at 316.455 kb on + strand, within GFF4050at 316.455 kb on + strand, within GFF4050at 316.497 kb on + strand, within GFF4050at 316.498 kb on - strand, within GFF4050at 316.655 kb on + strandat 316.656 kb on - strandat 316.656 kb on - strandat 316.679 kb on + strandat 316.680 kb on - strandat 316.680 kb on - strandat 316.680 kb on - strandat 316.683 kb on + strandat 316.684 kb on - strandat 316.684 kb on - strandat 316.684 kb on - strandat 316.684 kb on - strandat 316.699 kb on + strandat 316.699 kb on + strandat 316.700 kb on - strandat 316.700 kb on - strandat 316.700 kb on - strandat 316.769 kb on + strand, within GFF4051at 316.769 kb on + strand, within GFF4051at 316.769 kb on + strand, within GFF4051at 316.769 kb on + strand, within GFF4051at 316.769 kb on + strand, within GFF4051at 316.769 kb on + strand, within GFF4051at 316.770 kb on - strand, within GFF4051at 317.005 kb on + strand, within GFF4051at 317.005 kb on + strand, within GFF4051at 317.009 kb on + strand, within GFF4051at 317.009 kb on + strand, within GFF4051at 317.009 kb on + strand, within GFF4051at 317.009 kb on + strand, within GFF4051at 317.009 kb on + strand, within GFF4051at 317.009 kb on + strand, within GFF4051at 317.010 kb on - strand, within GFF4051at 317.010 kb on - strand, within GFF4051at 317.010 kb on - strand, within GFF4051at 317.010 kb on - strand, within GFF4051at 317.010 kb on - strand, within GFF4051at 317.045 kb on + strand, within GFF4051at 317.045 kb on + strand, within GFF4051at 317.045 kb on + strand, within GFF4051at 317.045 kb on + strand, within GFF4051at 317.045 kb on + strand, within GFF4051at 317.045 kb on + strand, within GFF4051at 317.045 kb on + strand, within GFF4051at 317.045 kb on + strand, within GFF4051at 317.046 kb on - strand, within GFF4051at 317.046 kb on - strand, within GFF4051at 317.046 kb on - strand, within GFF4051at 317.046 kb on - strand, within GFF4051at 317.046 kb on - strand, within GFF4051at 317.047 kb on + strand, within GFF4051at 317.047 kb on + strand, within GFF4051at 317.048 kb on - strand, within GFF4051at 317.048 kb on - strand, within GFF4051at 317.048 kb on - strand, within GFF4051at 317.166 kb on + strandat 317.167 kb on - strandat 317.187 kb on + strandat 317.187 kb on + strandat 317.187 kb on + strandat 317.188 kb on - strandat 317.211 kb on + strandat 317.211 kb on + strandat 317.212 kb on - strandat 317.212 kb on - strandat 317.213 kb on + strandat 317.213 kb on + strandat 317.213 kb on + strandat 317.214 kb on - strandat 317.214 kb on - strandat 317.214 kb on - strandat 317.214 kb on - strandat 317.238 kb on + strandat 317.239 kb on - strandat 317.290 kb on + strandat 317.290 kb on + strandat 317.290 kb on + strandat 317.290 kb on + strandat 317.290 kb on + strandat 317.290 kb on + strandat 317.290 kb on + strandat 317.290 kb on + strandat 317.291 kb on - strandat 317.291 kb on - strandat 317.291 kb on - strandat 317.291 kb on - strandat 317.291 kb on - strandat 317.291 kb on - strandat 317.291 kb on - strandat 317.291 kb on - strandat 317.291 kb on - strandat 317.291 kb on - strandat 317.367 kb on - strand, within GFF4052at 317.367 kb on - strand, within GFF4052at 317.490 kb on + strand, within GFF4052at 317.491 kb on - strand, within GFF4052at 317.562 kb on + strand, within GFF4052at 317.563 kb on - strand, within GFF4052at 317.563 kb on - strand, within GFF4052at 317.682 kb on + strand, within GFF4052at 317.683 kb on - strand, within GFF4052at 317.896 kb on - strand, within GFF4052at 317.940 kb on + strand, within GFF4052at 317.940 kb on + strand, within GFF4052at 317.940 kb on + strand, within GFF4052at 317.941 kb on - strand, within GFF4052at 317.941 kb on - strand, within GFF4052at 317.941 kb on - strand, within GFF4052at 317.941 kb on - strand, within GFF4052at 317.941 kb on - strand, within GFF4052at 317.941 kb on - strand, within GFF4052at 317.941 kb on - strand, within GFF4052at 317.967 kb on + strand, within GFF4052at 317.967 kb on + strand, within GFF4052at 317.967 kb on + strand, within GFF4052at 317.968 kb on - strand, within GFF4052at 317.968 kb on - strand, within GFF4052at 317.968 kb on - strand, within GFF4052at 318.000 kb on + strand, within GFF4052at 318.001 kb on - strand, within GFF4052at 318.065 kb on + strand, within GFF4052at 318.066 kb on - strand, within GFF4052at 318.066 kb on - strand, within GFF4052at 318.066 kb on - strand, within GFF4052at 318.081 kb on + strand, within GFF4052at 318.143 kb on + strandat 318.144 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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315,750 + GFF4050 0.46 -1.1
315,750 + GFF4050 0.46 -1.8
315,751 - GFF4050 0.46 -0.6
315,751 - GFF4050 0.46 -1.3
315,751 - GFF4050 0.46 -0.3
315,751 - GFF4050 0.46 -1.5
315,751 - GFF4050 0.46 -1.5
315,752 + GFF4050 0.46 -0.9
316,179 + GFF4050 0.71 -0.6
316,179 + GFF4050 0.71 -0.6
316,180 - GFF4050 0.71 -1.3
316,182 + GFF4050 0.71 -1.1
316,182 + GFF4050 0.71 -0.3
316,182 + GFF4050 0.71 -1.2
316,182 + GFF4050 0.71 -2.9
316,183 - GFF4050 0.71 -1.3
316,183 - GFF4050 0.71 -0.9
316,183 - GFF4050 0.71 -1.8
316,183 - GFF4050 0.71 -1.3
316,316 + GFF4050 0.79 -1.1
316,316 + GFF4050 0.79 -1.3
316,356 + GFF4050 0.81 -2.0
316,432 - GFF4050 0.85 -0.9
316,455 + GFF4050 0.87 -1.8
316,455 + GFF4050 0.87 -2.6
316,497 + GFF4050 0.89 -0.6
316,498 - GFF4050 0.89 -0.6
316,655 + -2.2
316,656 - -1.1
316,656 - -2.6
316,679 + -2.2
316,680 - -1.6
316,680 - -2.3
316,680 - -0.9
316,683 + -2.8
316,684 - -2.2
316,684 - -1.6
316,684 - -1.9
316,684 - -1.1
316,699 + -3.1
316,699 + -2.5
316,700 - -1.8
316,700 - -1.1
316,700 - -1.5
316,769 + GFF4051 0.16 -3.1
316,769 + GFF4051 0.16 -2.1
316,769 + GFF4051 0.16 -1.1
316,769 + GFF4051 0.16 -0.3
316,769 + GFF4051 0.16 -2.6
316,769 + GFF4051 0.16 +0.7
316,770 - GFF4051 0.17 -0.6
317,005 + GFF4051 0.64 +0.5
317,005 + GFF4051 0.64 -1.1
317,009 + GFF4051 0.65 -1.3
317,009 + GFF4051 0.65 -2.4
317,009 + GFF4051 0.65 +0.4
317,009 + GFF4051 0.65 -0.8
317,009 + GFF4051 0.65 -1.5
317,009 + GFF4051 0.65 +0.8
317,010 - GFF4051 0.65 -2.2
317,010 - GFF4051 0.65 -1.3
317,010 - GFF4051 0.65 -1.6
317,010 - GFF4051 0.65 -1.5
317,010 - GFF4051 0.65 +0.5
317,045 + GFF4051 0.73 -0.1
317,045 + GFF4051 0.73 -1.2
317,045 + GFF4051 0.73 -2.4
317,045 + GFF4051 0.73 -0.9
317,045 + GFF4051 0.73 -2.0
317,045 + GFF4051 0.73 -2.0
317,045 + GFF4051 0.73 -1.9
317,045 + GFF4051 0.73 -3.4
317,046 - GFF4051 0.73 -1.5
317,046 - GFF4051 0.73 -2.1
317,046 - GFF4051 0.73 -0.1
317,046 - GFF4051 0.73 -1.1
317,046 - GFF4051 0.73 -2.0
317,047 + GFF4051 0.73 -2.9
317,047 + GFF4051 0.73 -1.3
317,048 - GFF4051 0.73 -2.4
317,048 - GFF4051 0.73 -1.6
317,048 - GFF4051 0.73 -1.1
317,166 + +0.4
317,167 - -0.3
317,187 + +0.5
317,187 + +0.6
317,187 + -2.0
317,188 - -3.4
317,211 + +0.2
317,211 + -0.3
317,212 - -2.4
317,212 - -2.6
317,213 + +0.4
317,213 + +0.7
317,213 + +0.5
317,214 - -2.1
317,214 - -2.6
317,214 - -4.1
317,214 - -2.2
317,238 + -2.5
317,239 - -0.6
317,290 + -3.0
317,290 + -3.1
317,290 + -3.1
317,290 + -2.1
317,290 + -2.2
317,290 + -2.3
317,290 + -3.4
317,290 + -2.8
317,291 - -3.7
317,291 - -0.3
317,291 - -0.3
317,291 - -2.9
317,291 - -3.5
317,291 - -1.9
317,291 - -3.4
317,291 - -1.8
317,291 - -2.6
317,291 - -2.7
317,367 - GFF4052 0.14 -2.9
317,367 - GFF4052 0.14 -1.3
317,490 + GFF4052 0.26 -0.3
317,491 - GFF4052 0.26 -2.8
317,562 + GFF4052 0.33 -2.6
317,563 - GFF4052 0.33 -1.1
317,563 - GFF4052 0.33 -4.4
317,682 + GFF4052 0.45 -1.9
317,683 - GFF4052 0.45 -2.2
317,896 - GFF4052 0.66 -3.6
317,940 + GFF4052 0.70 -2.9
317,940 + GFF4052 0.70 -1.6
317,940 + GFF4052 0.70 -3.1
317,941 - GFF4052 0.70 -3.0
317,941 - GFF4052 0.70 -2.2
317,941 - GFF4052 0.70 -1.5
317,941 - GFF4052 0.70 -3.8
317,941 - GFF4052 0.70 -3.8
317,941 - GFF4052 0.70 -1.6
317,941 - GFF4052 0.70 -2.2
317,967 + GFF4052 0.73 -3.2
317,967 + GFF4052 0.73 -2.9
317,967 + GFF4052 0.73 -0.6
317,968 - GFF4052 0.73 -1.1
317,968 - GFF4052 0.73 -1.6
317,968 - GFF4052 0.73 -3.2
318,000 + GFF4052 0.76 -2.5
318,001 - GFF4052 0.76 -3.1
318,065 + GFF4052 0.82 -1.6
318,066 - GFF4052 0.83 -3.7
318,066 - GFF4052 0.83 -2.4
318,066 - GFF4052 0.83 -1.8
318,081 + GFF4052 0.84 -1.5
318,143 + -3.1
318,144 - -4.1

Or see this region's nucleotide sequence