Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4029 and GFF4030 are separated by 733 nucleotides GFF4030 and GFF4031 are separated by 22 nucleotides
GFF4029 - Poly(A) polymerase I, at 292,428 to 293,828
GFF4029
GFF4030 - Transcriptional regulatory protein ZraR, at 294,562 to 295,998
GFF4030
GFF4031 - Adaptive-response sensory-kinase SasA, at 296,021 to 298,975
GFF4031
Position (kb) 294
295
296 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 293.659 kb on + strand, within GFF4029 at 293.659 kb on + strand, within GFF4029 at 293.659 kb on + strand, within GFF4029 at 293.659 kb on + strand, within GFF4029 at 293.660 kb on - strand, within GFF4029 at 293.660 kb on - strand, within GFF4029 at 293.784 kb on - strand at 293.861 kb on - strand at 293.896 kb on - strand at 293.896 kb on - strand at 293.896 kb on - strand at 293.896 kb on - strand at 293.902 kb on + strand at 293.932 kb on + strand at 293.933 kb on - strand at 293.933 kb on - strand at 293.954 kb on - strand at 293.954 kb on - strand at 294.002 kb on + strand at 294.002 kb on + strand at 294.003 kb on - strand at 294.003 kb on - strand at 294.003 kb on - strand at 294.003 kb on - strand at 294.031 kb on + strand at 294.032 kb on - strand at 294.032 kb on - strand at 294.049 kb on - strand at 294.051 kb on + strand at 294.186 kb on - strand at 294.199 kb on + strand at 294.200 kb on - strand at 294.200 kb on - strand at 294.247 kb on + strand at 294.247 kb on + strand at 294.248 kb on - strand at 294.248 kb on - strand at 294.268 kb on + strand at 294.300 kb on + strand at 294.301 kb on - strand at 294.325 kb on - strand at 294.331 kb on - strand at 294.331 kb on - strand at 294.331 kb on - strand at 294.331 kb on - strand at 294.352 kb on + strand at 294.353 kb on - strand at 294.353 kb on - strand at 294.372 kb on + strand at 294.372 kb on + strand at 294.372 kb on + strand at 294.375 kb on - strand at 294.422 kb on - strand at 294.431 kb on + strand at 294.493 kb on - strand at 294.710 kb on + strand, within GFF4030 at 294.710 kb on + strand, within GFF4030 at 294.710 kb on + strand, within GFF4030 at 294.711 kb on - strand, within GFF4030 at 294.924 kb on - strand, within GFF4030 at 294.924 kb on - strand, within GFF4030 at 295.082 kb on + strand, within GFF4030 at 295.082 kb on + strand, within GFF4030 at 295.082 kb on + strand, within GFF4030 at 295.083 kb on - strand, within GFF4030 at 295.083 kb on - strand, within GFF4030 at 295.083 kb on - strand, within GFF4030 at 295.183 kb on + strand, within GFF4030 at 295.184 kb on - strand, within GFF4030 at 295.523 kb on + strand, within GFF4030 at 295.523 kb on + strand, within GFF4030 at 295.523 kb on + strand, within GFF4030 at 295.523 kb on + strand, within GFF4030 at 295.524 kb on - strand, within GFF4030 at 295.623 kb on + strand, within GFF4030 at 295.715 kb on + strand, within GFF4030 at 295.715 kb on + strand, within GFF4030 at 295.715 kb on + strand, within GFF4030 at 295.715 kb on + strand, within GFF4030 at 295.715 kb on + strand, within GFF4030 at 295.716 kb on - strand, within GFF4030 at 295.716 kb on - strand, within GFF4030 at 295.716 kb on - strand, within GFF4030 at 295.866 kb on + strand at 295.867 kb on - strand at 295.867 kb on - strand at 295.922 kb on + strand at 296.093 kb on + strand at 296.093 kb on + strand at 296.093 kb on + strand at 296.093 kb on + strand at 296.094 kb on - strand at 296.094 kb on - strand at 296.094 kb on - strand at 296.128 kb on - strand at 296.148 kb on + strand at 296.149 kb on - strand at 296.149 kb on - strand at 296.149 kb on - strand at 296.415 kb on + strand, within GFF4031 at 296.415 kb on + strand, within GFF4031 at 296.415 kb on + strand, within GFF4031 at 296.415 kb on + strand, within GFF4031 at 296.415 kb on + strand, within GFF4031 at 296.416 kb on - strand, within GFF4031 at 296.416 kb on - strand, within GFF4031 at 296.705 kb on + strand, within GFF4031 at 296.706 kb on - strand, within GFF4031 at 296.706 kb on - strand, within GFF4031 at 296.777 kb on + strand, within GFF4031 at 296.777 kb on + strand, within GFF4031 at 296.903 kb on - strand, within GFF4031
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 293,659 + GFF4029 0.88 +0.7 293,659 + GFF4029 0.88 -0.9 293,659 + GFF4029 0.88 +0.4 293,659 + GFF4029 0.88 -0.3 293,660 - GFF4029 0.88 +0.1 293,660 - GFF4029 0.88 -1.1 293,784 - -1.3 293,861 - -0.6 293,896 - +1.8 293,896 - +0.7 293,896 - -0.1 293,896 - +0.4 293,902 + +1.1 293,932 + -0.0 293,933 - +0.6 293,933 - +0.0 293,954 - +0.9 293,954 - -0.3 294,002 + +0.8 294,002 + +0.3 294,003 - +0.3 294,003 - -0.1 294,003 - +0.3 294,003 - -0.5 294,031 + -0.6 294,032 - +0.0 294,032 - -0.9 294,049 - -0.5 294,051 + -0.2 294,186 - -0.6 294,199 + -0.6 294,200 - -2.9 294,200 - -1.1 294,247 + -1.0 294,247 + -1.8 294,248 - -0.9 294,248 - -0.5 294,268 + +0.6 294,300 + -0.8 294,301 - -0.6 294,325 - -2.6 294,331 - +0.7 294,331 - -0.1 294,331 - -1.6 294,331 - -0.5 294,352 + +0.1 294,353 - -0.3 294,353 - +1.4 294,372 + -0.0 294,372 + -0.5 294,372 + -0.3 294,375 - +1.7 294,422 - -1.1 294,431 + +0.7 294,493 - -1.9 294,710 + GFF4030 0.10 -0.6 294,710 + GFF4030 0.10 -1.3 294,710 + GFF4030 0.10 -0.3 294,711 - GFF4030 0.10 -1.1 294,924 - GFF4030 0.25 -0.3 294,924 - GFF4030 0.25 +1.7 295,082 + GFF4030 0.36 -1.1 295,082 + GFF4030 0.36 -0.3 295,082 + GFF4030 0.36 -1.7 295,083 - GFF4030 0.36 -0.3 295,083 - GFF4030 0.36 -1.6 295,083 - GFF4030 0.36 -1.8 295,183 + GFF4030 0.43 -1.1 295,184 - GFF4030 0.43 -1.4 295,523 + GFF4030 0.67 +0.7 295,523 + GFF4030 0.67 -0.3 295,523 + GFF4030 0.67 +0.4 295,523 + GFF4030 0.67 -0.3 295,524 - GFF4030 0.67 -1.3 295,623 + GFF4030 0.74 -2.2 295,715 + GFF4030 0.80 -1.1 295,715 + GFF4030 0.80 -1.3 295,715 + GFF4030 0.80 -0.9 295,715 + GFF4030 0.80 -1.6 295,715 + GFF4030 0.80 -0.6 295,716 - GFF4030 0.80 -1.8 295,716 - GFF4030 0.80 -1.5 295,716 - GFF4030 0.80 -1.6 295,866 + -1.3 295,867 - -1.3 295,867 - -1.1 295,922 + -0.9 296,093 + -1.1 296,093 + -2.6 296,093 + -2.1 296,093 + -0.3 296,094 - +0.1 296,094 - -0.9 296,094 - -0.8 296,128 - -1.1 296,148 + -0.3 296,149 - -0.3 296,149 - +0.1 296,149 - +0.2 296,415 + GFF4031 0.13 -0.3 296,415 + GFF4031 0.13 -0.6 296,415 + GFF4031 0.13 -1.1 296,415 + GFF4031 0.13 -0.4 296,415 + GFF4031 0.13 -0.3 296,416 - GFF4031 0.13 -1.2 296,416 - GFF4031 0.13 +1.4 296,705 + GFF4031 0.23 -0.8 296,706 - GFF4031 0.23 -0.6 296,706 - GFF4031 0.23 -0.2 296,777 + GFF4031 0.26 -2.5 296,777 + GFF4031 0.26 -2.1 296,903 - GFF4031 0.30 -1.6
Or see this region's nucleotide sequence