Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3800 and GFF3801 are separated by 143 nucleotides GFF3801 and GFF3802 are separated by 101 nucleotides GFF3802 and GFF3803 are separated by 279 nucleotides
GFF3800 - hypothetical protein, at 45,827 to 46,495
GFF3800
GFF3801 - Streptothricin hydrolase, at 46,639 to 47,193
GFF3801
GFF3802 - HTH-type transcriptional activator RhaS, at 47,295 to 48,296
GFF3802
GFF3803 - hypothetical protein, at 48,576 to 49,685
GFF3803
Position (kb) 47
48
49 Strain fitness (log2 ratio) -2
-1
0
1 at 46.304 kb on + strand, within GFF3800 at 46.305 kb on - strand, within GFF3800 at 46.305 kb on - strand, within GFF3800 at 46.305 kb on - strand, within GFF3800 at 46.371 kb on + strand, within GFF3800 at 46.410 kb on + strand, within GFF3800 at 46.411 kb on - strand, within GFF3800 at 46.411 kb on - strand, within GFF3800 at 46.411 kb on - strand, within GFF3800 at 46.411 kb on - strand, within GFF3800 at 46.411 kb on - strand, within GFF3800 at 46.511 kb on - strand at 46.537 kb on + strand at 46.537 kb on + strand at 46.537 kb on + strand at 46.538 kb on - strand at 46.538 kb on - strand at 46.538 kb on - strand at 46.538 kb on - strand at 46.538 kb on - strand at 46.640 kb on + strand at 46.673 kb on - strand at 46.842 kb on + strand, within GFF3801 at 46.842 kb on + strand, within GFF3801 at 46.842 kb on + strand, within GFF3801 at 46.842 kb on + strand, within GFF3801 at 46.842 kb on + strand, within GFF3801 at 46.842 kb on + strand, within GFF3801 at 46.843 kb on - strand, within GFF3801 at 46.843 kb on - strand, within GFF3801 at 46.843 kb on - strand, within GFF3801 at 46.843 kb on - strand, within GFF3801 at 46.843 kb on - strand, within GFF3801 at 46.843 kb on - strand, within GFF3801 at 46.843 kb on - strand, within GFF3801 at 46.843 kb on - strand, within GFF3801 at 46.843 kb on - strand, within GFF3801 at 47.150 kb on + strand at 47.150 kb on + strand at 47.151 kb on - strand at 47.151 kb on - strand at 47.170 kb on + strand at 47.170 kb on + strand at 47.171 kb on - strand at 47.171 kb on - strand at 47.232 kb on + strand at 47.233 kb on - strand at 47.276 kb on - strand at 47.276 kb on - strand at 47.341 kb on - strand at 47.491 kb on - strand, within GFF3802 at 48.184 kb on - strand, within GFF3802 at 48.184 kb on - strand, within GFF3802 at 48.247 kb on - strand at 48.295 kb on - strand at 48.295 kb on - strand at 48.295 kb on - strand at 48.295 kb on - strand at 48.295 kb on - strand at 48.356 kb on + strand at 48.356 kb on + strand at 48.356 kb on + strand at 48.357 kb on - strand at 48.357 kb on - strand at 48.357 kb on - strand at 48.712 kb on - strand, within GFF3803 at 48.712 kb on - strand, within GFF3803 at 48.744 kb on + strand, within GFF3803 at 48.744 kb on + strand, within GFF3803 at 48.745 kb on - strand, within GFF3803 at 48.745 kb on - strand, within GFF3803 at 48.961 kb on + strand, within GFF3803 at 48.961 kb on + strand, within GFF3803 at 48.961 kb on + strand, within GFF3803 at 48.961 kb on + strand, within GFF3803 at 48.961 kb on + strand, within GFF3803 at 48.961 kb on + strand, within GFF3803 at 48.962 kb on - strand, within GFF3803 at 49.135 kb on + strand, within GFF3803 at 49.135 kb on + strand, within GFF3803 at 49.136 kb on - strand, within GFF3803 at 49.136 kb on - strand, within GFF3803 at 49.227 kb on + strand, within GFF3803 at 49.228 kb on - strand, within GFF3803 at 49.228 kb on - strand, within GFF3803 at 49.228 kb on - strand, within GFF3803 at 49.228 kb on - strand, within GFF3803 at 49.261 kb on - strand, within GFF3803
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 46,304 + GFF3800 0.71 -0.2 46,305 - GFF3800 0.71 -0.8 46,305 - GFF3800 0.71 -0.5 46,305 - GFF3800 0.71 -0.4 46,371 + GFF3800 0.81 -0.9 46,410 + GFF3800 0.87 +0.7 46,411 - GFF3800 0.87 +0.4 46,411 - GFF3800 0.87 +0.1 46,411 - GFF3800 0.87 +0.0 46,411 - GFF3800 0.87 -1.2 46,411 - GFF3800 0.87 +0.3 46,511 - -0.5 46,537 + -0.3 46,537 + +0.4 46,537 + -0.3 46,538 - +0.6 46,538 - +0.2 46,538 - -0.9 46,538 - +1.5 46,538 - +0.6 46,640 + +1.0 46,673 - +0.2 46,842 + GFF3801 0.37 -0.7 46,842 + GFF3801 0.37 -1.6 46,842 + GFF3801 0.37 +0.5 46,842 + GFF3801 0.37 -0.6 46,842 + GFF3801 0.37 +0.8 46,842 + GFF3801 0.37 -0.2 46,843 - GFF3801 0.37 -0.2 46,843 - GFF3801 0.37 -0.2 46,843 - GFF3801 0.37 -0.7 46,843 - GFF3801 0.37 -2.2 46,843 - GFF3801 0.37 +0.2 46,843 - GFF3801 0.37 +1.1 46,843 - GFF3801 0.37 -0.0 46,843 - GFF3801 0.37 +1.0 46,843 - GFF3801 0.37 +1.0 47,150 + +0.8 47,150 + -0.6 47,151 - +0.5 47,151 - -0.2 47,170 + -0.4 47,170 + +0.2 47,171 - +0.0 47,171 - -0.0 47,232 + -0.9 47,233 - +0.4 47,276 - +0.2 47,276 - +0.1 47,341 - +0.3 47,491 - GFF3802 0.20 -1.2 48,184 - GFF3802 0.89 -0.9 48,184 - GFF3802 0.89 -0.4 48,247 - +1.7 48,295 - +1.0 48,295 - +0.0 48,295 - -0.6 48,295 - -0.4 48,295 - +0.3 48,356 + -0.4 48,356 + +0.8 48,356 + -1.5 48,357 - -0.7 48,357 - -0.1 48,357 - +0.4 48,712 - GFF3803 0.12 -0.2 48,712 - GFF3803 0.12 +1.1 48,744 + GFF3803 0.15 -0.6 48,744 + GFF3803 0.15 +0.1 48,745 - GFF3803 0.15 -0.5 48,745 - GFF3803 0.15 -0.1 48,961 + GFF3803 0.35 +0.6 48,961 + GFF3803 0.35 +0.5 48,961 + GFF3803 0.35 +0.1 48,961 + GFF3803 0.35 -0.4 48,961 + GFF3803 0.35 -0.7 48,961 + GFF3803 0.35 +0.5 48,962 - GFF3803 0.35 +0.1 49,135 + GFF3803 0.50 -1.6 49,135 + GFF3803 0.50 +0.6 49,136 - GFF3803 0.50 -1.0 49,136 - GFF3803 0.50 +0.3 49,227 + GFF3803 0.59 +0.7 49,228 - GFF3803 0.59 +0.2 49,228 - GFF3803 0.59 +0.7 49,228 - GFF3803 0.59 +0.5 49,228 - GFF3803 0.59 +0.7 49,261 - GFF3803 0.62 +1.1
Or see this region's nucleotide sequence