Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF372 and GFF373 are separated by 101 nucleotides GFF373 and GFF374 are separated by 215 nucleotides GFF374 and GFF375 are separated by 37 nucleotides GFF375 and GFF376 are separated by 394 nucleotides
GFF372 - Transcriptional regulator SutA, at 411,093 to 411,419
GFF372
GFF373 - hypothetical protein, at 411,521 to 411,946
GFF373
GFF374 - Ammonia channel, at 412,162 to 413,499
GFF374
GFF375 - Nitrogen regulatory protein P-II 2, at 413,537 to 413,875
GFF375
GFF376 - Ubiquinone biosynthesis accessory factor UbiK, at 414,270 to 414,530
GFF376
Position (kb) 412
413
414 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 411.424 kb on + strand at 411.424 kb on + strand at 411.424 kb on + strand at 411.424 kb on + strand at 411.424 kb on + strand at 411.425 kb on - strand at 411.425 kb on - strand at 411.425 kb on - strand at 411.450 kb on + strand at 411.450 kb on + strand at 411.451 kb on - strand at 411.454 kb on + strand at 411.454 kb on + strand at 411.454 kb on + strand at 411.455 kb on - strand at 411.455 kb on - strand at 411.455 kb on - strand at 411.456 kb on + strand at 411.456 kb on + strand at 411.456 kb on + strand at 411.456 kb on + strand at 411.456 kb on + strand at 411.457 kb on - strand at 411.457 kb on - strand at 411.457 kb on - strand at 411.457 kb on - strand at 411.457 kb on - strand at 411.457 kb on - strand at 411.591 kb on + strand, within GFF373 at 411.591 kb on + strand, within GFF373 at 411.591 kb on + strand, within GFF373 at 411.592 kb on - strand, within GFF373 at 411.592 kb on - strand, within GFF373 at 411.715 kb on - strand, within GFF373 at 411.715 kb on - strand, within GFF373 at 411.946 kb on + strand at 411.946 kb on + strand at 411.946 kb on + strand at 411.946 kb on + strand at 411.946 kb on + strand at 411.946 kb on + strand at 411.946 kb on + strand at 411.946 kb on + strand at 411.946 kb on + strand at 411.947 kb on - strand at 411.947 kb on - strand at 411.947 kb on - strand at 411.947 kb on - strand at 411.947 kb on - strand at 411.976 kb on + strand at 411.976 kb on + strand at 411.977 kb on - strand at 411.977 kb on - strand at 412.006 kb on - strand at 412.008 kb on + strand at 412.008 kb on + strand at 412.008 kb on + strand at 412.008 kb on + strand at 412.008 kb on + strand at 412.008 kb on + strand at 412.008 kb on + strand at 412.008 kb on + strand at 412.009 kb on - strand at 412.009 kb on - strand at 412.009 kb on - strand at 412.024 kb on + strand at 412.024 kb on + strand at 412.025 kb on - strand at 412.025 kb on - strand at 412.025 kb on - strand at 412.159 kb on + strand at 412.160 kb on - strand at 412.160 kb on - strand at 412.160 kb on - strand at 412.160 kb on - strand at 412.163 kb on + strand at 412.163 kb on + strand at 412.163 kb on + strand at 412.163 kb on + strand at 412.163 kb on + strand at 412.163 kb on + strand at 412.163 kb on + strand at 412.164 kb on - strand at 412.164 kb on - strand at 412.164 kb on - strand at 412.172 kb on + strand at 412.173 kb on - strand at 412.185 kb on + strand at 412.185 kb on + strand at 412.185 kb on + strand at 412.185 kb on + strand at 412.186 kb on - strand at 412.186 kb on - strand at 412.186 kb on - strand at 412.186 kb on - strand at 412.186 kb on - strand at 412.289 kb on + strand at 412.289 kb on + strand at 412.289 kb on + strand at 412.289 kb on + strand at 412.964 kb on + strand, within GFF374 at 412.965 kb on - strand, within GFF374 at 413.234 kb on + strand, within GFF374 at 413.234 kb on + strand, within GFF374 at 413.234 kb on + strand, within GFF374 at 413.234 kb on + strand, within GFF374 at 413.234 kb on + strand, within GFF374 at 413.234 kb on + strand, within GFF374 at 413.234 kb on + strand, within GFF374 at 413.235 kb on - strand, within GFF374 at 413.235 kb on - strand, within GFF374 at 413.235 kb on - strand, within GFF374 at 413.235 kb on - strand, within GFF374 at 413.324 kb on + strand, within GFF374 at 413.325 kb on - strand, within GFF374 at 413.325 kb on - strand, within GFF374 at 413.452 kb on + strand at 413.452 kb on + strand at 413.499 kb on + strand at 413.499 kb on + strand at 413.499 kb on + strand at 413.499 kb on + strand at 413.499 kb on + strand at 413.500 kb on - strand at 413.538 kb on + strand at 413.538 kb on + strand at 413.538 kb on + strand at 413.539 kb on - strand at 413.539 kb on - strand at 413.539 kb on - strand at 413.932 kb on + strand at 413.933 kb on - strand at 413.933 kb on - strand at 413.953 kb on + strand at 413.974 kb on + strand at 414.059 kb on + strand at 414.221 kb on - strand at 414.221 kb on - strand at 414.222 kb on + strand at 414.222 kb on + strand at 414.222 kb on + strand at 414.222 kb on + strand at 414.222 kb on + strand at 414.222 kb on + strand at 414.223 kb on - strand at 414.223 kb on - strand at 414.223 kb on - strand at 414.223 kb on - strand at 414.223 kb on - strand at 414.223 kb on - strand at 414.223 kb on - strand at 414.223 kb on - strand at 414.223 kb on - strand at 414.236 kb on + strand at 414.237 kb on - strand at 414.432 kb on - strand, within GFF376
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 411,424 + -0.6 411,424 + +1.3 411,424 + -1.2 411,424 + -0.7 411,424 + -1.9 411,425 - -0.8 411,425 - -0.4 411,425 - +0.5 411,450 + -0.9 411,450 + +1.0 411,451 - +0.8 411,454 + -0.5 411,454 + -2.6 411,454 + -0.4 411,455 - +2.6 411,455 - -0.1 411,455 - +0.5 411,456 + -1.1 411,456 + -0.1 411,456 + -0.5 411,456 + -0.2 411,456 + -0.3 411,457 - -0.9 411,457 - -0.4 411,457 - +0.4 411,457 - -0.2 411,457 - +0.9 411,457 - +0.2 411,591 + GFF373 0.16 -3.9 411,591 + GFF373 0.16 -0.8 411,591 + GFF373 0.16 -2.3 411,592 - GFF373 0.17 +0.0 411,592 - GFF373 0.17 +0.3 411,715 - GFF373 0.46 +0.2 411,715 - GFF373 0.46 +0.5 411,946 + -0.7 411,946 + +0.0 411,946 + -0.7 411,946 + -2.2 411,946 + -1.1 411,946 + -0.4 411,946 + -0.9 411,946 + +0.5 411,946 + -0.1 411,947 - -0.2 411,947 - -0.1 411,947 - -0.1 411,947 - +0.8 411,947 - +0.2 411,976 + -0.1 411,976 + -0.8 411,977 - -0.3 411,977 - +0.3 412,006 - -1.0 412,008 + +0.6 412,008 + +1.8 412,008 + -0.5 412,008 + -0.4 412,008 + -0.4 412,008 + -0.7 412,008 + +0.8 412,008 + -0.1 412,009 - +0.3 412,009 - +0.0 412,009 - +0.9 412,024 + +0.4 412,024 + -1.2 412,025 - +1.4 412,025 - +0.5 412,025 - -0.1 412,159 + -1.5 412,160 - -0.2 412,160 - +0.1 412,160 - +0.6 412,160 - +0.0 412,163 + -0.1 412,163 + -0.2 412,163 + +0.3 412,163 + +1.8 412,163 + -0.1 412,163 + +1.1 412,163 + +0.6 412,164 - -0.0 412,164 - -0.6 412,164 - +0.4 412,172 + -1.0 412,173 - -0.6 412,185 + +0.2 412,185 + -0.3 412,185 + -0.7 412,185 + -0.1 412,186 - +0.9 412,186 - +0.3 412,186 - +0.1 412,186 - +0.4 412,186 - +1.2 412,289 + -0.6 412,289 + -0.8 412,289 + -1.1 412,289 + +0.2 412,964 + GFF374 0.60 -0.7 412,965 - GFF374 0.60 -0.6 413,234 + GFF374 0.80 -0.5 413,234 + GFF374 0.80 +0.9 413,234 + GFF374 0.80 -0.2 413,234 + GFF374 0.80 -0.5 413,234 + GFF374 0.80 -1.3 413,234 + GFF374 0.80 -1.1 413,234 + GFF374 0.80 -0.3 413,235 - GFF374 0.80 -1.3 413,235 - GFF374 0.80 -0.9 413,235 - GFF374 0.80 +1.0 413,235 - GFF374 0.80 -0.5 413,324 + GFF374 0.87 -1.4 413,325 - GFF374 0.87 -0.3 413,325 - GFF374 0.87 -1.3 413,452 + -0.7 413,452 + -1.5 413,499 + -0.9 413,499 + -0.8 413,499 + -1.2 413,499 + -1.6 413,499 + -0.5 413,500 - -1.4 413,538 + -1.0 413,538 + -1.3 413,538 + -0.8 413,539 - -0.5 413,539 - -0.4 413,539 - -0.8 413,932 + -2.5 413,933 - -1.1 413,933 - +0.1 413,953 + -2.5 413,974 + -3.7 414,059 + -0.9 414,221 - +0.1 414,221 - -0.4 414,222 + +0.2 414,222 + +0.9 414,222 + +0.4 414,222 + -0.2 414,222 + -0.2 414,222 + -0.7 414,223 - -0.6 414,223 - -0.4 414,223 - -0.8 414,223 - -0.9 414,223 - -0.8 414,223 - +0.4 414,223 - +0.5 414,223 - -0.7 414,223 - -0.1 414,236 + +0.6 414,237 - +0.4 414,432 - GFF376 0.62 -0.5
Or see this region's nucleotide sequence