Strain Fitness in Pseudomonas sp. DMC3 around GFF3693

Experiment: D-Glucose and D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3692 and GFF3693 overlap by 17 nucleotidesGFF3693 and GFF3694 are separated by 67 nucleotides GFF3692 - Sulfite reductase [ferredoxin], at 302,134 to 303,792 GFF3692 GFF3693 - hypothetical protein, at 303,776 to 304,270 GFF3693 GFF3694 - putative protease SohB, at 304,338 to 305,369 GFF3694 Position (kb) 303 304 305Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 302.818 kb on + strand, within GFF3692at 302.818 kb on + strand, within GFF3692at 302.818 kb on + strand, within GFF3692at 302.819 kb on - strand, within GFF3692at 302.819 kb on - strand, within GFF3692at 302.842 kb on + strand, within GFF3692at 302.842 kb on + strand, within GFF3692at 302.842 kb on + strand, within GFF3692at 302.842 kb on + strand, within GFF3692at 302.843 kb on - strand, within GFF3692at 302.843 kb on - strand, within GFF3692at 302.843 kb on - strand, within GFF3692at 302.843 kb on - strand, within GFF3692at 302.872 kb on + strand, within GFF3692at 302.872 kb on + strand, within GFF3692at 302.872 kb on + strand, within GFF3692at 302.872 kb on + strand, within GFF3692at 302.873 kb on - strand, within GFF3692at 302.873 kb on - strand, within GFF3692at 303.134 kb on - strand, within GFF3692at 303.134 kb on - strand, within GFF3692at 303.464 kb on - strand, within GFF3692at 303.580 kb on + strand, within GFF3692at 303.581 kb on - strand, within GFF3692at 303.581 kb on - strand, within GFF3692at 303.694 kb on + strandat 303.694 kb on + strandat 303.694 kb on + strandat 303.695 kb on - strandat 303.695 kb on - strandat 303.695 kb on - strandat 303.695 kb on - strandat 303.736 kb on + strandat 303.736 kb on + strandat 303.736 kb on + strandat 303.737 kb on - strandat 303.737 kb on - strandat 303.737 kb on - strandat 303.745 kb on - strandat 303.745 kb on - strandat 303.745 kb on - strandat 303.745 kb on - strandat 303.775 kb on + strandat 303.775 kb on + strandat 303.776 kb on - strandat 303.776 kb on - strandat 303.790 kb on + strandat 303.790 kb on + strandat 303.791 kb on - strandat 304.040 kb on - strand, within GFF3693at 304.043 kb on + strand, within GFF3693at 304.044 kb on - strand, within GFF3693at 304.044 kb on - strand, within GFF3693at 304.110 kb on + strand, within GFF3693at 304.111 kb on - strand, within GFF3693at 304.130 kb on + strand, within GFF3693at 304.130 kb on + strand, within GFF3693at 304.131 kb on - strand, within GFF3693at 304.131 kb on - strand, within GFF3693at 304.185 kb on - strand, within GFF3693at 304.224 kb on - strandat 304.224 kb on - strandat 304.326 kb on + strandat 304.327 kb on - strandat 304.447 kb on + strand, within GFF3694at 304.459 kb on + strand, within GFF3694at 304.460 kb on - strand, within GFF3694at 304.460 kb on - strand, within GFF3694at 304.460 kb on - strand, within GFF3694at 304.492 kb on + strand, within GFF3694at 304.492 kb on + strand, within GFF3694at 304.493 kb on - strand, within GFF3694at 304.493 kb on - strand, within GFF3694at 304.632 kb on - strand, within GFF3694at 304.705 kb on + strand, within GFF3694at 304.705 kb on + strand, within GFF3694at 304.706 kb on - strand, within GFF3694at 304.706 kb on - strand, within GFF3694at 304.850 kb on - strand, within GFF3694at 304.850 kb on - strand, within GFF3694at 304.939 kb on + strand, within GFF3694at 305.058 kb on - strand, within GFF3694at 305.215 kb on + strand, within GFF3694at 305.216 kb on - strand, within GFF3694

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
remove
302,818 + GFF3692 0.41 -4.0
302,818 + GFF3692 0.41 -1.0
302,818 + GFF3692 0.41 -3.2
302,819 - GFF3692 0.41 -2.9
302,819 - GFF3692 0.41 -1.0
302,842 + GFF3692 0.43 -2.3
302,842 + GFF3692 0.43 -1.8
302,842 + GFF3692 0.43 -2.5
302,842 + GFF3692 0.43 -1.2
302,843 - GFF3692 0.43 -2.2
302,843 - GFF3692 0.43 -1.5
302,843 - GFF3692 0.43 -2.3
302,843 - GFF3692 0.43 -3.3
302,872 + GFF3692 0.44 -2.6
302,872 + GFF3692 0.44 -3.1
302,872 + GFF3692 0.44 -4.5
302,872 + GFF3692 0.44 -2.3
302,873 - GFF3692 0.45 -1.5
302,873 - GFF3692 0.45 -1.5
303,134 - GFF3692 0.60 -3.8
303,134 - GFF3692 0.60 -1.6
303,464 - GFF3692 0.80 -3.5
303,580 + GFF3692 0.87 -1.3
303,581 - GFF3692 0.87 -1.0
303,581 - GFF3692 0.87 -0.7
303,694 + -2.4
303,694 + -2.0
303,694 + -3.9
303,695 - -2.9
303,695 - -0.7
303,695 - -1.3
303,695 - -1.7
303,736 + -3.0
303,736 + -2.7
303,736 + -2.0
303,737 - -2.0
303,737 - -3.3
303,737 - -2.3
303,745 - -2.2
303,745 - -2.0
303,745 - -3.0
303,745 - -2.3
303,775 + -0.6
303,775 + -0.7
303,776 - -0.7
303,776 - -1.0
303,790 + -2.6
303,790 + -3.7
303,791 - -0.7
304,040 - GFF3693 0.53 -2.0
304,043 + GFF3693 0.54 -4.2
304,044 - GFF3693 0.54 -3.2
304,044 - GFF3693 0.54 -3.5
304,110 + GFF3693 0.67 -2.0
304,111 - GFF3693 0.68 -1.5
304,130 + GFF3693 0.72 -2.8
304,130 + GFF3693 0.72 -2.4
304,131 - GFF3693 0.72 -4.1
304,131 - GFF3693 0.72 -3.5
304,185 - GFF3693 0.83 -3.8
304,224 - -1.6
304,224 - -1.3
304,326 + +0.1
304,327 - -0.0
304,447 + GFF3694 0.11 -0.1
304,459 + GFF3694 0.12 +0.2
304,460 - GFF3694 0.12 +0.9
304,460 - GFF3694 0.12 +1.0
304,460 - GFF3694 0.12 -1.2
304,492 + GFF3694 0.15 +0.3
304,492 + GFF3694 0.15 +0.2
304,493 - GFF3694 0.15 -0.7
304,493 - GFF3694 0.15 -0.0
304,632 - GFF3694 0.28 -0.2
304,705 + GFF3694 0.36 +0.3
304,705 + GFF3694 0.36 +0.3
304,706 - GFF3694 0.36 -0.4
304,706 - GFF3694 0.36 +0.1
304,850 - GFF3694 0.50 -1.4
304,850 - GFF3694 0.50 -1.5
304,939 + GFF3694 0.58 +1.4
305,058 - GFF3694 0.70 -0.7
305,215 + GFF3694 0.85 -0.6
305,216 - GFF3694 0.85 -0.1

Or see this region's nucleotide sequence