Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3689 and GFF3690 are separated by 151 nucleotides GFF3690 and GFF3691 are separated by 63 nucleotides GFF3691 and GFF3692 are separated by 292 nucleotides GFF3692 and GFF3693 overlap by 17 nucleotides GFF3693 and GFF3694 are separated by 67 nucleotides
GFF3689 - hypothetical protein, at 294,137 to 301,294
GFF3689
GFF3690 - hypothetical protein, at 301,446 to 301,664
GFF3690
GFF3691 - hypothetical protein, at 301,728 to 301,841
GFF3691
GFF3692 - Sulfite reductase [ferredoxin], at 302,134 to 303,792
GFF3692
GFF3693 - hypothetical protein, at 303,776 to 304,270
GFF3693
GFF3694 - putative protease SohB, at 304,338 to 305,369
GFF3694
Position (kb) 302
303
304 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 301.294 kb on + strand at 301.294 kb on + strand at 301.294 kb on + strand at 301.294 kb on + strand at 301.294 kb on + strand at 301.294 kb on + strand at 301.294 kb on + strand at 301.294 kb on + strand at 301.294 kb on + strand at 301.294 kb on + strand at 301.294 kb on + strand at 301.295 kb on - strand at 301.295 kb on - strand at 301.295 kb on - strand at 301.295 kb on - strand at 301.295 kb on - strand at 301.295 kb on - strand at 301.295 kb on - strand at 301.295 kb on - strand at 301.307 kb on + strand at 301.307 kb on + strand at 301.308 kb on - strand at 301.351 kb on + strand at 301.351 kb on + strand at 301.359 kb on + strand at 301.359 kb on + strand at 301.359 kb on + strand at 301.359 kb on + strand at 301.359 kb on + strand at 301.359 kb on + strand at 301.359 kb on + strand at 301.360 kb on - strand at 301.360 kb on - strand at 301.360 kb on - strand at 301.361 kb on + strand at 301.361 kb on + strand at 301.361 kb on + strand at 301.362 kb on - strand at 301.362 kb on - strand at 301.411 kb on + strand at 301.412 kb on - strand at 301.445 kb on + strand at 301.445 kb on + strand at 301.445 kb on + strand at 301.445 kb on + strand at 301.647 kb on + strand at 301.648 kb on - strand at 301.729 kb on + strand at 301.729 kb on + strand at 301.730 kb on - strand at 301.730 kb on - strand at 301.730 kb on - strand at 301.730 kb on - strand at 301.761 kb on + strand, within GFF3691 at 301.805 kb on + strand, within GFF3691 at 301.806 kb on - strand, within GFF3691 at 301.806 kb on - strand, within GFF3691 at 301.895 kb on + strand at 301.896 kb on - strand at 301.930 kb on - strand at 301.930 kb on - strand at 301.972 kb on + strand at 302.009 kb on + strand at 302.009 kb on + strand at 302.010 kb on - strand at 302.010 kb on - strand at 302.010 kb on - strand at 302.010 kb on - strand at 302.011 kb on + strand at 302.011 kb on + strand at 302.011 kb on + strand at 302.011 kb on + strand at 302.011 kb on + strand at 302.011 kb on + strand at 302.012 kb on - strand at 302.012 kb on - strand at 302.012 kb on - strand at 302.131 kb on + strand at 302.131 kb on + strand at 302.131 kb on + strand at 302.131 kb on + strand at 302.131 kb on + strand at 302.131 kb on + strand at 302.131 kb on + strand at 302.131 kb on + strand at 302.131 kb on + strand at 302.131 kb on + strand at 302.131 kb on + strand at 302.132 kb on - strand at 302.132 kb on - strand at 302.132 kb on - strand at 302.132 kb on - strand at 302.132 kb on - strand at 302.133 kb on + strand at 302.133 kb on + strand at 302.133 kb on + strand at 302.133 kb on + strand at 302.133 kb on + strand at 302.133 kb on + strand at 302.133 kb on + strand at 302.133 kb on + strand at 302.133 kb on + strand at 302.133 kb on + strand at 302.133 kb on + strand at 302.133 kb on + strand at 302.133 kb on + strand at 302.133 kb on + strand at 302.133 kb on + strand at 302.134 kb on - strand at 302.134 kb on - strand at 302.134 kb on - strand at 302.134 kb on - strand at 302.134 kb on - strand at 302.134 kb on - strand at 302.134 kb on - strand at 302.134 kb on - strand at 302.134 kb on - strand at 302.134 kb on - strand at 302.134 kb on - strand at 302.134 kb on - strand at 302.134 kb on - strand at 302.134 kb on - strand at 302.134 kb on - strand at 302.134 kb on - strand at 302.134 kb on - strand at 302.134 kb on - strand at 302.137 kb on + strand at 302.137 kb on + strand at 302.137 kb on + strand at 302.137 kb on + strand at 302.137 kb on + strand at 302.137 kb on + strand at 302.137 kb on + strand at 302.137 kb on + strand at 302.137 kb on + strand at 302.137 kb on + strand at 302.137 kb on + strand at 302.138 kb on - strand at 302.138 kb on - strand at 302.138 kb on - strand at 302.138 kb on - strand at 302.138 kb on - strand at 302.138 kb on - strand at 302.138 kb on - strand at 302.138 kb on - strand at 302.138 kb on - strand at 302.138 kb on - strand at 302.141 kb on + strand at 302.141 kb on + strand at 302.141 kb on + strand at 302.141 kb on + strand at 302.141 kb on + strand at 302.141 kb on + strand at 302.142 kb on - strand at 302.142 kb on - strand at 302.142 kb on - strand at 302.142 kb on - strand at 302.142 kb on - strand at 302.142 kb on - strand at 302.142 kb on - strand at 302.153 kb on - strand at 302.209 kb on + strand at 302.269 kb on + strand at 302.269 kb on + strand at 302.269 kb on + strand at 302.269 kb on + strand at 302.269 kb on + strand at 302.270 kb on - strand at 302.270 kb on - strand at 302.270 kb on - strand at 302.270 kb on - strand at 302.270 kb on - strand at 302.312 kb on - strand, within GFF3692 at 302.365 kb on + strand, within GFF3692 at 302.378 kb on - strand, within GFF3692 at 302.615 kb on - strand, within GFF3692 at 302.705 kb on - strand, within GFF3692 at 302.705 kb on - strand, within GFF3692 at 302.818 kb on + strand, within GFF3692 at 302.818 kb on + strand, within GFF3692 at 302.818 kb on + strand, within GFF3692 at 302.819 kb on - strand, within GFF3692 at 302.819 kb on - strand, within GFF3692 at 302.842 kb on + strand, within GFF3692 at 302.842 kb on + strand, within GFF3692 at 302.842 kb on + strand, within GFF3692 at 302.842 kb on + strand, within GFF3692 at 302.843 kb on - strand, within GFF3692 at 302.843 kb on - strand, within GFF3692 at 302.843 kb on - strand, within GFF3692 at 302.843 kb on - strand, within GFF3692 at 302.872 kb on + strand, within GFF3692 at 302.872 kb on + strand, within GFF3692 at 302.872 kb on + strand, within GFF3692 at 302.872 kb on + strand, within GFF3692 at 302.873 kb on - strand, within GFF3692 at 302.873 kb on - strand, within GFF3692 at 303.134 kb on - strand, within GFF3692 at 303.134 kb on - strand, within GFF3692 at 303.464 kb on - strand, within GFF3692 at 303.580 kb on + strand, within GFF3692 at 303.581 kb on - strand, within GFF3692 at 303.581 kb on - strand, within GFF3692 at 303.694 kb on + strand at 303.694 kb on + strand at 303.694 kb on + strand at 303.695 kb on - strand at 303.695 kb on - strand at 303.695 kb on - strand at 303.695 kb on - strand at 303.736 kb on + strand at 303.736 kb on + strand at 303.736 kb on + strand at 303.737 kb on - strand at 303.737 kb on - strand at 303.737 kb on - strand at 303.745 kb on - strand at 303.745 kb on - strand at 303.745 kb on - strand at 303.745 kb on - strand at 303.775 kb on + strand at 303.775 kb on + strand at 303.776 kb on - strand at 303.776 kb on - strand at 303.790 kb on + strand at 303.790 kb on + strand at 303.791 kb on - strand at 304.040 kb on - strand, within GFF3693 at 304.043 kb on + strand, within GFF3693 at 304.044 kb on - strand, within GFF3693 at 304.044 kb on - strand, within GFF3693 at 304.110 kb on + strand, within GFF3693 at 304.111 kb on - strand, within GFF3693 at 304.130 kb on + strand, within GFF3693 at 304.130 kb on + strand, within GFF3693 at 304.131 kb on - strand, within GFF3693 at 304.131 kb on - strand, within GFF3693 at 304.185 kb on - strand, within GFF3693 at 304.224 kb on - strand at 304.224 kb on - strand at 304.326 kb on + strand at 304.327 kb on - strand at 304.447 kb on + strand, within GFF3694 at 304.459 kb on + strand, within GFF3694 at 304.460 kb on - strand, within GFF3694 at 304.460 kb on - strand, within GFF3694 at 304.460 kb on - strand, within GFF3694 at 304.492 kb on + strand, within GFF3694 at 304.492 kb on + strand, within GFF3694 at 304.493 kb on - strand, within GFF3694 at 304.493 kb on - strand, within GFF3694 at 304.632 kb on - strand, within GFF3694 at 304.705 kb on + strand, within GFF3694 at 304.705 kb on + strand, within GFF3694 at 304.706 kb on - strand, within GFF3694 at 304.706 kb on - strand, within GFF3694
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 301,294 + -0.3 301,294 + -0.3 301,294 + -2.3 301,294 + -0.5 301,294 + -1.7 301,294 + -1.3 301,294 + +0.5 301,294 + -0.6 301,294 + -0.2 301,294 + -1.7 301,294 + +0.6 301,295 - -1.0 301,295 - +0.5 301,295 - -0.1 301,295 - -0.6 301,295 - -0.3 301,295 - -1.3 301,295 - +0.1 301,295 - +0.3 301,307 + +0.3 301,307 + +0.1 301,308 - +0.3 301,351 + +0.5 301,351 + -0.1 301,359 + -0.6 301,359 + -0.6 301,359 + -0.4 301,359 + +0.5 301,359 + -1.0 301,359 + -1.0 301,359 + -1.5 301,360 - -0.3 301,360 - -1.2 301,360 - -1.1 301,361 + -0.0 301,361 + +0.1 301,361 + +2.2 301,362 - +0.7 301,362 - +0.2 301,411 + -0.0 301,412 - -0.0 301,445 + +0.7 301,445 + +0.5 301,445 + -0.4 301,445 + +0.3 301,647 + -0.6 301,648 - -0.4 301,729 + -0.5 301,729 + +2.3 301,730 - -0.4 301,730 - -1.5 301,730 - +0.5 301,730 - +0.3 301,761 + GFF3691 0.29 +0.9 301,805 + GFF3691 0.68 +0.2 301,806 - GFF3691 0.68 +1.5 301,806 - GFF3691 0.68 -0.7 301,895 + +0.9 301,896 - -0.5 301,930 - +0.2 301,930 - +0.0 301,972 + -0.4 302,009 + -0.7 302,009 + -1.0 302,010 - -2.9 302,010 - -1.7 302,010 - -3.5 302,010 - -2.6 302,011 + -1.2 302,011 + -0.2 302,011 + -0.3 302,011 + +0.9 302,011 + -0.9 302,011 + +0.6 302,012 - -3.4 302,012 - -3.0 302,012 - -2.3 302,131 + -2.3 302,131 + -2.5 302,131 + -1.7 302,131 + -3.1 302,131 + -1.0 302,131 + -1.0 302,131 + -3.2 302,131 + -2.2 302,131 + -3.6 302,131 + -1.5 302,131 + -1.3 302,132 - -2.4 302,132 - -2.8 302,132 - -1.0 302,132 - -1.9 302,132 - -1.5 302,133 + -1.0 302,133 + -1.5 302,133 + -1.7 302,133 + -2.2 302,133 + -1.3 302,133 + -2.4 302,133 + -0.3 302,133 + -1.6 302,133 + -1.4 302,133 + -1.5 302,133 + -1.7 302,133 + -3.2 302,133 + -2.0 302,133 + -3.0 302,133 + -2.9 302,134 - -3.0 302,134 - -2.2 302,134 - -1.9 302,134 - -2.3 302,134 - -2.5 302,134 - -1.7 302,134 - -3.0 302,134 - -2.3 302,134 - -1.4 302,134 - -1.9 302,134 - -1.5 302,134 - -2.3 302,134 - -3.5 302,134 - -1.9 302,134 - -3.0 302,134 - -3.3 302,134 - -2.0 302,134 - -2.5 302,137 + -3.7 302,137 + -3.3 302,137 + -1.7 302,137 + -1.7 302,137 + -3.4 302,137 + -2.5 302,137 + -2.5 302,137 + -1.9 302,137 + -1.9 302,137 + -2.2 302,137 + -2.9 302,138 - -2.3 302,138 - -2.5 302,138 - -2.4 302,138 - -3.7 302,138 - -1.9 302,138 - -3.4 302,138 - -2.5 302,138 - -2.5 302,138 - -1.9 302,138 - -2.8 302,141 + -4.4 302,141 + -3.1 302,141 + -0.0 302,141 + -1.6 302,141 + -1.9 302,141 + -2.5 302,142 - -1.8 302,142 - -3.6 302,142 - -1.3 302,142 - -2.3 302,142 - -3.2 302,142 - -0.0 302,142 - -0.6 302,153 - -1.5 302,209 + -3.0 302,269 + -0.7 302,269 + -1.8 302,269 + -3.0 302,269 + -1.0 302,269 + -3.2 302,270 - -2.9 302,270 - -4.6 302,270 - -3.7 302,270 - -1.8 302,270 - -2.2 302,312 - GFF3692 0.11 -0.6 302,365 + GFF3692 0.14 -2.2 302,378 - GFF3692 0.15 -1.5 302,615 - GFF3692 0.29 -3.0 302,705 - GFF3692 0.34 -1.7 302,705 - GFF3692 0.34 -2.5 302,818 + GFF3692 0.41 -4.0 302,818 + GFF3692 0.41 -1.0 302,818 + GFF3692 0.41 -3.2 302,819 - GFF3692 0.41 -2.9 302,819 - GFF3692 0.41 -1.0 302,842 + GFF3692 0.43 -2.3 302,842 + GFF3692 0.43 -1.8 302,842 + GFF3692 0.43 -2.5 302,842 + GFF3692 0.43 -1.2 302,843 - GFF3692 0.43 -2.2 302,843 - GFF3692 0.43 -1.5 302,843 - GFF3692 0.43 -2.3 302,843 - GFF3692 0.43 -3.3 302,872 + GFF3692 0.44 -2.6 302,872 + GFF3692 0.44 -3.1 302,872 + GFF3692 0.44 -4.5 302,872 + GFF3692 0.44 -2.3 302,873 - GFF3692 0.45 -1.5 302,873 - GFF3692 0.45 -1.5 303,134 - GFF3692 0.60 -3.8 303,134 - GFF3692 0.60 -1.6 303,464 - GFF3692 0.80 -3.5 303,580 + GFF3692 0.87 -1.3 303,581 - GFF3692 0.87 -1.0 303,581 - GFF3692 0.87 -0.7 303,694 + -2.4 303,694 + -2.0 303,694 + -3.9 303,695 - -2.9 303,695 - -0.7 303,695 - -1.3 303,695 - -1.7 303,736 + -3.0 303,736 + -2.7 303,736 + -2.0 303,737 - -2.0 303,737 - -3.3 303,737 - -2.3 303,745 - -2.2 303,745 - -2.0 303,745 - -3.0 303,745 - -2.3 303,775 + -0.6 303,775 + -0.7 303,776 - -0.7 303,776 - -1.0 303,790 + -2.6 303,790 + -3.7 303,791 - -0.7 304,040 - GFF3693 0.53 -2.0 304,043 + GFF3693 0.54 -4.2 304,044 - GFF3693 0.54 -3.2 304,044 - GFF3693 0.54 -3.5 304,110 + GFF3693 0.67 -2.0 304,111 - GFF3693 0.68 -1.5 304,130 + GFF3693 0.72 -2.8 304,130 + GFF3693 0.72 -2.4 304,131 - GFF3693 0.72 -4.1 304,131 - GFF3693 0.72 -3.5 304,185 - GFF3693 0.83 -3.8 304,224 - -1.6 304,224 - -1.3 304,326 + +0.1 304,327 - -0.0 304,447 + GFF3694 0.11 -0.1 304,459 + GFF3694 0.12 +0.2 304,460 - GFF3694 0.12 +0.9 304,460 - GFF3694 0.12 +1.0 304,460 - GFF3694 0.12 -1.2 304,492 + GFF3694 0.15 +0.3 304,492 + GFF3694 0.15 +0.2 304,493 - GFF3694 0.15 -0.7 304,493 - GFF3694 0.15 -0.0 304,632 - GFF3694 0.28 -0.2 304,705 + GFF3694 0.36 +0.3 304,705 + GFF3694 0.36 +0.3 304,706 - GFF3694 0.36 -0.4 304,706 - GFF3694 0.36 +0.1
Or see this region's nucleotide sequence