Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3617 and GFF3618 are separated by 569 nucleotides GFF3618 and GFF3619 are separated by 157 nucleotides GFF3619 and GFF3620 are separated by 135 nucleotides
GFF3617 - Universal stress protein E, at 202,905 to 203,900
GFF3617
GFF3618 - hypothetical protein, at 204,470 to 204,709
GFF3618
GFF3619 - hypothetical protein, at 204,867 to 205,085
GFF3619
GFF3620 - hypothetical protein, at 205,221 to 206,006
GFF3620
Position (kb) 204
205
206 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 204.019 kb on + strand at 204.019 kb on + strand at 204.019 kb on + strand at 204.019 kb on + strand at 204.019 kb on + strand at 204.019 kb on + strand at 204.019 kb on + strand at 204.019 kb on + strand at 204.020 kb on - strand at 204.020 kb on - strand at 204.020 kb on - strand at 204.020 kb on - strand at 204.020 kb on - strand at 204.080 kb on + strand at 204.175 kb on + strand at 204.175 kb on + strand at 204.263 kb on + strand at 204.263 kb on + strand at 204.263 kb on + strand at 204.263 kb on + strand at 204.263 kb on + strand at 204.263 kb on + strand at 204.264 kb on - strand at 204.264 kb on - strand at 204.264 kb on - strand at 204.264 kb on - strand at 204.264 kb on - strand at 204.271 kb on + strand at 204.272 kb on - strand at 204.272 kb on - strand at 204.289 kb on + strand at 204.307 kb on + strand at 204.308 kb on - strand at 204.308 kb on - strand at 204.458 kb on + strand at 204.458 kb on + strand at 204.521 kb on - strand, within GFF3618 at 204.521 kb on - strand, within GFF3618 at 204.522 kb on + strand, within GFF3618 at 204.523 kb on - strand, within GFF3618 at 204.523 kb on - strand, within GFF3618 at 204.523 kb on - strand, within GFF3618 at 204.523 kb on - strand, within GFF3618 at 204.523 kb on - strand, within GFF3618 at 204.523 kb on - strand, within GFF3618 at 204.714 kb on - strand at 204.714 kb on - strand at 204.740 kb on + strand at 204.740 kb on + strand at 204.740 kb on + strand at 204.740 kb on + strand at 204.740 kb on + strand at 204.741 kb on - strand at 204.741 kb on - strand at 204.741 kb on - strand at 204.741 kb on - strand at 204.741 kb on - strand at 204.742 kb on + strand at 204.742 kb on + strand at 204.742 kb on + strand at 204.743 kb on - strand at 204.837 kb on + strand at 204.837 kb on + strand at 204.837 kb on + strand at 204.837 kb on + strand at 204.837 kb on + strand at 204.837 kb on + strand at 204.838 kb on - strand at 204.838 kb on - strand at 204.838 kb on - strand at 205.032 kb on + strand, within GFF3619 at 205.032 kb on + strand, within GFF3619 at 205.033 kb on - strand, within GFF3619 at 205.033 kb on - strand, within GFF3619 at 205.078 kb on + strand at 205.078 kb on + strand at 205.078 kb on + strand at 205.078 kb on + strand at 205.078 kb on + strand at 205.079 kb on - strand at 205.119 kb on + strand at 205.119 kb on + strand at 205.119 kb on + strand at 205.119 kb on + strand at 205.120 kb on - strand at 205.120 kb on - strand at 205.120 kb on - strand at 205.120 kb on - strand at 205.145 kb on + strand at 205.145 kb on + strand at 205.146 kb on - strand at 205.149 kb on + strand at 205.149 kb on + strand at 205.149 kb on + strand at 205.149 kb on + strand at 205.150 kb on - strand at 205.150 kb on - strand at 205.150 kb on - strand at 205.169 kb on - strand at 205.177 kb on - strand at 205.177 kb on - strand at 205.193 kb on - strand at 205.215 kb on - strand at 205.238 kb on - strand at 205.251 kb on + strand at 205.251 kb on + strand at 205.251 kb on + strand at 205.251 kb on + strand at 205.251 kb on + strand at 205.251 kb on + strand at 205.251 kb on + strand at 205.252 kb on - strand at 205.252 kb on - strand at 205.252 kb on - strand at 205.252 kb on - strand at 205.257 kb on + strand at 205.258 kb on - strand at 205.258 kb on - strand at 205.258 kb on - strand at 205.258 kb on - strand at 205.258 kb on - strand at 205.259 kb on + strand at 205.259 kb on + strand at 205.260 kb on - strand at 205.266 kb on + strand at 205.266 kb on + strand at 205.266 kb on + strand at 205.266 kb on + strand at 205.266 kb on + strand at 205.267 kb on - strand at 205.267 kb on - strand at 205.267 kb on - strand at 205.267 kb on - strand at 205.267 kb on - strand at 205.280 kb on - strand at 205.280 kb on - strand at 205.341 kb on - strand, within GFF3620 at 205.341 kb on - strand, within GFF3620 at 205.359 kb on + strand, within GFF3620 at 205.359 kb on + strand, within GFF3620 at 205.383 kb on + strand, within GFF3620 at 205.384 kb on - strand, within GFF3620 at 205.396 kb on + strand, within GFF3620 at 205.396 kb on + strand, within GFF3620 at 205.396 kb on + strand, within GFF3620 at 205.396 kb on + strand, within GFF3620 at 205.397 kb on - strand, within GFF3620 at 205.436 kb on + strand, within GFF3620 at 205.437 kb on - strand, within GFF3620 at 205.456 kb on + strand, within GFF3620 at 205.456 kb on + strand, within GFF3620 at 205.456 kb on + strand, within GFF3620 at 205.522 kb on + strand, within GFF3620 at 205.532 kb on + strand, within GFF3620 at 205.532 kb on + strand, within GFF3620 at 205.544 kb on - strand, within GFF3620 at 205.630 kb on + strand, within GFF3620 at 205.630 kb on + strand, within GFF3620 at 205.631 kb on - strand, within GFF3620 at 205.631 kb on - strand, within GFF3620 at 205.698 kb on + strand, within GFF3620 at 205.698 kb on + strand, within GFF3620 at 205.698 kb on + strand, within GFF3620 at 205.698 kb on + strand, within GFF3620 at 205.698 kb on + strand, within GFF3620 at 205.699 kb on - strand, within GFF3620 at 205.717 kb on + strand, within GFF3620 at 205.734 kb on - strand, within GFF3620 at 205.734 kb on - strand, within GFF3620 at 205.734 kb on - strand, within GFF3620 at 205.734 kb on - strand, within GFF3620 at 205.736 kb on + strand, within GFF3620 at 205.737 kb on - strand, within GFF3620 at 205.788 kb on - strand, within GFF3620 at 205.788 kb on - strand, within GFF3620 at 205.841 kb on - strand, within GFF3620 at 205.847 kb on + strand, within GFF3620 at 205.847 kb on + strand, within GFF3620 at 205.847 kb on + strand, within GFF3620 at 205.847 kb on + strand, within GFF3620 at 205.848 kb on - strand, within GFF3620 at 205.848 kb on - strand, within GFF3620 at 205.848 kb on - strand, within GFF3620 at 205.848 kb on - strand, within GFF3620 at 205.848 kb on - strand, within GFF3620 at 205.862 kb on - strand, within GFF3620 at 206.076 kb on + strand at 206.077 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 204,019 + +0.3 204,019 + +0.1 204,019 + +0.3 204,019 + -1.3 204,019 + -0.3 204,019 + -0.1 204,019 + +1.5 204,019 + -0.5 204,020 - -0.1 204,020 - -0.3 204,020 - -0.8 204,020 - +0.4 204,020 - -1.5 204,080 + +1.0 204,175 + -0.3 204,175 + -0.5 204,263 + +0.9 204,263 + -0.1 204,263 + +1.1 204,263 + -2.0 204,263 + -0.7 204,263 + +0.1 204,264 - +0.4 204,264 - +0.2 204,264 - -0.3 204,264 - -0.9 204,264 - +0.6 204,271 + +0.7 204,272 - -0.2 204,272 - -0.6 204,289 + -0.3 204,307 + -0.0 204,308 - +0.3 204,308 - +0.3 204,458 + -0.3 204,458 + -2.8 204,521 - GFF3618 0.21 +0.7 204,521 - GFF3618 0.21 -0.7 204,522 + GFF3618 0.22 +1.0 204,523 - GFF3618 0.22 -0.4 204,523 - GFF3618 0.22 -1.2 204,523 - GFF3618 0.22 -0.2 204,523 - GFF3618 0.22 -0.7 204,523 - GFF3618 0.22 -0.5 204,523 - GFF3618 0.22 -0.4 204,714 - -0.7 204,714 - +0.5 204,740 + -0.9 204,740 + +0.7 204,740 + -0.3 204,740 + -0.4 204,740 + +0.4 204,741 - -0.9 204,741 - +0.4 204,741 - -0.5 204,741 - -0.4 204,741 - +0.3 204,742 + -0.8 204,742 + -1.0 204,742 + -1.3 204,743 - +2.0 204,837 + -0.3 204,837 + +0.3 204,837 + +1.9 204,837 + -0.5 204,837 + +0.0 204,837 + -1.8 204,838 - +0.2 204,838 - -0.6 204,838 - +0.3 205,032 + GFF3619 0.75 -1.5 205,032 + GFF3619 0.75 -0.7 205,033 - GFF3619 0.76 -0.7 205,033 - GFF3619 0.76 -0.5 205,078 + +0.2 205,078 + +0.5 205,078 + -0.7 205,078 + -0.8 205,078 + +0.1 205,079 - -0.3 205,119 + +1.6 205,119 + -0.1 205,119 + +0.4 205,119 + -1.1 205,120 - -0.3 205,120 - -0.5 205,120 - +0.3 205,120 - -0.4 205,145 + -0.5 205,145 + -1.2 205,146 - +0.6 205,149 + -0.9 205,149 + +1.0 205,149 + -0.7 205,149 + +1.1 205,150 - +0.2 205,150 - -0.6 205,150 - -1.0 205,169 - -0.0 205,177 - -0.1 205,177 - +0.3 205,193 - -0.4 205,215 - -0.7 205,238 - -1.1 205,251 + -0.0 205,251 + +1.6 205,251 + -0.3 205,251 + +0.1 205,251 + -0.2 205,251 + +0.3 205,251 + -0.7 205,252 - -0.9 205,252 - +0.4 205,252 - +0.0 205,252 - -0.7 205,257 + -0.6 205,258 - +0.7 205,258 - -1.3 205,258 - +0.2 205,258 - -0.3 205,258 - -0.3 205,259 + +0.1 205,259 + -0.6 205,260 - -0.3 205,266 + +0.2 205,266 + +0.4 205,266 + -0.0 205,266 + +0.5 205,266 + +1.9 205,267 - -0.1 205,267 - -2.5 205,267 - -0.5 205,267 - +0.2 205,267 - -0.4 205,280 - -0.5 205,280 - -0.4 205,341 - GFF3620 0.15 -0.6 205,341 - GFF3620 0.15 -0.6 205,359 + GFF3620 0.18 -0.6 205,359 + GFF3620 0.18 -1.3 205,383 + GFF3620 0.21 -1.1 205,384 - GFF3620 0.21 -0.4 205,396 + GFF3620 0.22 -0.7 205,396 + GFF3620 0.22 +0.6 205,396 + GFF3620 0.22 -0.7 205,396 + GFF3620 0.22 +0.8 205,397 - GFF3620 0.22 -1.7 205,436 + GFF3620 0.27 -0.7 205,437 - GFF3620 0.27 -0.3 205,456 + GFF3620 0.30 +0.3 205,456 + GFF3620 0.30 +0.3 205,456 + GFF3620 0.30 -0.8 205,522 + GFF3620 0.38 +0.6 205,532 + GFF3620 0.40 -0.5 205,532 + GFF3620 0.40 +0.3 205,544 - GFF3620 0.41 +0.8 205,630 + GFF3620 0.52 -0.6 205,630 + GFF3620 0.52 -0.3 205,631 - GFF3620 0.52 +0.2 205,631 - GFF3620 0.52 -1.0 205,698 + GFF3620 0.61 -0.3 205,698 + GFF3620 0.61 +1.0 205,698 + GFF3620 0.61 -0.3 205,698 + GFF3620 0.61 -0.6 205,698 + GFF3620 0.61 +0.4 205,699 - GFF3620 0.61 -0.6 205,717 + GFF3620 0.63 -0.4 205,734 - GFF3620 0.65 -0.1 205,734 - GFF3620 0.65 -0.5 205,734 - GFF3620 0.65 -0.5 205,734 - GFF3620 0.65 -0.5 205,736 + GFF3620 0.66 +2.1 205,737 - GFF3620 0.66 -0.2 205,788 - GFF3620 0.72 +0.7 205,788 - GFF3620 0.72 -1.4 205,841 - GFF3620 0.79 -0.0 205,847 + GFF3620 0.80 +0.1 205,847 + GFF3620 0.80 -0.5 205,847 + GFF3620 0.80 +1.3 205,847 + GFF3620 0.80 +0.1 205,848 - GFF3620 0.80 +0.7 205,848 - GFF3620 0.80 -1.5 205,848 - GFF3620 0.80 -0.7 205,848 - GFF3620 0.80 +0.6 205,848 - GFF3620 0.80 +1.3 205,862 - GFF3620 0.82 -0.1 206,076 + +0.6 206,077 - +0.4
Or see this region's nucleotide sequence