Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF358 and GFF359 are separated by 469 nucleotides GFF359 and GFF360 are separated by 119 nucleotides GFF360 and GFF361 are separated by 123 nucleotides
GFF358 - Sensory transduction protein LytR, at 397,472 to 398,218
GFF358
GFF359 - Argininosuccinate lyase, at 398,688 to 400,082
GFF359
GFF360 - Glutathione S-transferase, at 400,202 to 400,861
GFF360
GFF361 - hypothetical protein, at 400,985 to 401,275
GFF361
Position (kb) 398
399
400
401 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 397.719 kb on + strand, within GFF358 at 397.719 kb on + strand, within GFF358 at 397.719 kb on + strand, within GFF358 at 397.719 kb on + strand, within GFF358 at 397.719 kb on + strand, within GFF358 at 397.720 kb on - strand, within GFF358 at 397.720 kb on - strand, within GFF358 at 397.720 kb on - strand, within GFF358 at 397.720 kb on - strand, within GFF358 at 397.740 kb on + strand, within GFF358 at 397.740 kb on + strand, within GFF358 at 397.740 kb on + strand, within GFF358 at 397.740 kb on + strand, within GFF358 at 397.740 kb on + strand, within GFF358 at 397.741 kb on - strand, within GFF358 at 397.741 kb on - strand, within GFF358 at 397.741 kb on - strand, within GFF358 at 397.741 kb on - strand, within GFF358 at 397.741 kb on - strand, within GFF358 at 397.923 kb on + strand, within GFF358 at 397.924 kb on - strand, within GFF358 at 397.924 kb on - strand, within GFF358 at 397.924 kb on - strand, within GFF358 at 397.924 kb on - strand, within GFF358 at 398.142 kb on + strand, within GFF358 at 398.142 kb on + strand, within GFF358 at 398.164 kb on + strand at 398.164 kb on + strand at 398.164 kb on + strand at 398.165 kb on - strand at 398.165 kb on - strand at 398.171 kb on + strand at 398.218 kb on + strand at 398.218 kb on + strand at 398.219 kb on - strand at 398.219 kb on - strand at 398.219 kb on - strand at 398.219 kb on - strand at 398.260 kb on + strand at 398.260 kb on + strand at 398.260 kb on + strand at 398.260 kb on + strand at 398.260 kb on + strand at 398.261 kb on - strand at 398.261 kb on - strand at 398.270 kb on + strand at 398.271 kb on - strand at 398.271 kb on - strand at 398.271 kb on - strand at 398.298 kb on + strand at 398.328 kb on + strand at 398.344 kb on - strand at 398.344 kb on - strand at 398.344 kb on - strand at 398.344 kb on - strand at 398.415 kb on + strand at 398.415 kb on + strand at 398.415 kb on + strand at 398.416 kb on - strand at 398.416 kb on - strand at 398.416 kb on - strand at 398.439 kb on + strand at 398.439 kb on + strand at 398.440 kb on - strand at 398.440 kb on - strand at 398.440 kb on - strand at 398.440 kb on - strand at 398.440 kb on - strand at 398.440 kb on - strand at 398.440 kb on - strand at 398.440 kb on - strand at 398.440 kb on - strand at 398.440 kb on - strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.488 kb on - strand at 398.488 kb on - strand at 398.488 kb on - strand at 398.488 kb on - strand at 398.488 kb on - strand at 398.488 kb on - strand at 398.499 kb on - strand at 398.499 kb on - strand at 398.518 kb on - strand at 398.545 kb on + strand at 398.597 kb on + strand at 398.598 kb on - strand at 398.598 kb on - strand at 398.634 kb on + strand at 398.634 kb on + strand at 398.634 kb on + strand at 398.635 kb on - strand at 398.635 kb on - strand at 399.315 kb on + strand, within GFF359 at 399.333 kb on + strand, within GFF359 at 399.333 kb on + strand, within GFF359 at 399.334 kb on - strand, within GFF359 at 399.334 kb on - strand, within GFF359 at 399.652 kb on - strand, within GFF359 at 399.652 kb on - strand, within GFF359 at 399.652 kb on - strand, within GFF359 at 399.820 kb on - strand, within GFF359 at 399.820 kb on - strand, within GFF359 at 399.820 kb on - strand, within GFF359 at 399.882 kb on + strand, within GFF359 at 399.883 kb on - strand, within GFF359 at 399.883 kb on - strand, within GFF359 at 400.081 kb on - strand at 400.081 kb on - strand at 400.383 kb on + strand, within GFF360 at 400.383 kb on + strand, within GFF360 at 400.384 kb on - strand, within GFF360 at 400.392 kb on + strand, within GFF360 at 400.392 kb on + strand, within GFF360 at 400.393 kb on - strand, within GFF360 at 400.393 kb on - strand, within GFF360 at 400.393 kb on - strand, within GFF360 at 400.393 kb on - strand, within GFF360 at 400.428 kb on + strand, within GFF360 at 400.539 kb on + strand, within GFF360 at 400.566 kb on + strand, within GFF360 at 400.566 kb on + strand, within GFF360 at 400.566 kb on + strand, within GFF360 at 400.566 kb on + strand, within GFF360 at 400.566 kb on + strand, within GFF360 at 400.566 kb on + strand, within GFF360 at 400.567 kb on - strand, within GFF360 at 400.567 kb on - strand, within GFF360 at 400.567 kb on - strand, within GFF360 at 400.567 kb on - strand, within GFF360 at 400.567 kb on - strand, within GFF360 at 400.567 kb on - strand, within GFF360 at 400.567 kb on - strand, within GFF360 at 400.567 kb on - strand, within GFF360 at 400.595 kb on + strand, within GFF360 at 400.596 kb on - strand, within GFF360 at 400.596 kb on - strand, within GFF360 at 400.688 kb on - strand, within GFF360 at 400.689 kb on + strand, within GFF360 at 400.689 kb on + strand, within GFF360 at 400.690 kb on - strand, within GFF360 at 400.824 kb on + strand at 400.824 kb on + strand at 400.824 kb on + strand at 400.824 kb on + strand at 400.824 kb on + strand at 400.824 kb on + strand at 400.825 kb on - strand at 400.825 kb on - strand at 400.825 kb on - strand at 400.825 kb on - strand at 400.825 kb on - strand at 400.825 kb on - strand at 400.825 kb on - strand at 400.825 kb on - strand at 400.825 kb on - strand at 400.825 kb on - strand at 400.827 kb on + strand at 400.827 kb on + strand at 400.827 kb on + strand at 400.828 kb on - strand at 400.828 kb on - strand at 400.828 kb on - strand at 400.828 kb on - strand at 400.828 kb on - strand at 400.902 kb on + strand at 400.902 kb on + strand at 400.903 kb on - strand at 400.903 kb on - strand at 400.903 kb on - strand at 400.903 kb on - strand at 400.904 kb on + strand at 400.904 kb on + strand at 400.904 kb on + strand at 400.904 kb on + strand at 400.905 kb on - strand at 401.003 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 397,719 + GFF358 0.33 +0.6 397,719 + GFF358 0.33 +0.2 397,719 + GFF358 0.33 -0.5 397,719 + GFF358 0.33 +0.2 397,719 + GFF358 0.33 +0.6 397,720 - GFF358 0.33 -0.2 397,720 - GFF358 0.33 +0.3 397,720 - GFF358 0.33 -1.7 397,720 - GFF358 0.33 +0.8 397,740 + GFF358 0.36 +0.4 397,740 + GFF358 0.36 +0.5 397,740 + GFF358 0.36 +0.0 397,740 + GFF358 0.36 +0.8 397,740 + GFF358 0.36 +1.1 397,741 - GFF358 0.36 +1.4 397,741 - GFF358 0.36 -0.2 397,741 - GFF358 0.36 +0.9 397,741 - GFF358 0.36 -0.0 397,741 - GFF358 0.36 +1.4 397,923 + GFF358 0.60 +0.6 397,924 - GFF358 0.61 -0.1 397,924 - GFF358 0.61 -1.0 397,924 - GFF358 0.61 -1.0 397,924 - GFF358 0.61 -1.0 398,142 + GFF358 0.90 +0.2 398,142 + GFF358 0.90 -0.4 398,164 + +0.9 398,164 + +1.3 398,164 + +0.3 398,165 - +0.0 398,165 - -0.2 398,171 + +0.3 398,218 + -0.8 398,218 + +0.2 398,219 - +0.1 398,219 - +1.3 398,219 - -0.8 398,219 - -1.6 398,260 + -0.0 398,260 + +0.8 398,260 + +0.5 398,260 + +0.6 398,260 + +0.1 398,261 - -1.4 398,261 - -0.6 398,270 + -0.5 398,271 - -0.1 398,271 - -2.5 398,271 - +1.3 398,298 + +1.0 398,328 + -0.1 398,344 - +0.3 398,344 - -0.9 398,344 - -0.2 398,344 - -0.4 398,415 + +0.3 398,415 + -0.5 398,415 + -0.1 398,416 - -2.4 398,416 - +0.3 398,416 - -1.9 398,439 + -0.0 398,439 + +0.8 398,440 - -1.4 398,440 - +0.7 398,440 - -0.4 398,440 - -1.1 398,440 - -0.7 398,440 - -1.6 398,440 - +1.0 398,440 - -2.0 398,440 - -2.0 398,440 - -0.6 398,487 + -0.2 398,487 + -0.4 398,487 + -0.2 398,487 + -0.1 398,487 + +0.2 398,487 + -1.9 398,487 + -0.3 398,487 + +0.3 398,488 - -0.0 398,488 - -1.0 398,488 - -1.3 398,488 - -0.0 398,488 - -0.8 398,488 - -0.6 398,499 - -0.0 398,499 - -0.4 398,518 - -0.1 398,545 + -0.8 398,597 + +0.1 398,598 - +0.8 398,598 - -1.7 398,634 + +1.2 398,634 + -0.3 398,634 + -0.7 398,635 - -1.1 398,635 - -1.0 399,315 + GFF359 0.45 -0.8 399,333 + GFF359 0.46 -2.6 399,333 + GFF359 0.46 -2.1 399,334 - GFF359 0.46 -1.6 399,334 - GFF359 0.46 -0.2 399,652 - GFF359 0.69 -2.8 399,652 - GFF359 0.69 -1.2 399,652 - GFF359 0.69 -2.5 399,820 - GFF359 0.81 -0.9 399,820 - GFF359 0.81 -4.2 399,820 - GFF359 0.81 -2.4 399,882 + GFF359 0.86 -4.2 399,883 - GFF359 0.86 -1.4 399,883 - GFF359 0.86 -2.0 400,081 - +0.4 400,081 - -2.3 400,383 + GFF360 0.27 +0.5 400,383 + GFF360 0.27 +0.8 400,384 - GFF360 0.28 -0.4 400,392 + GFF360 0.29 -0.8 400,392 + GFF360 0.29 -1.0 400,393 - GFF360 0.29 -0.2 400,393 - GFF360 0.29 -0.4 400,393 - GFF360 0.29 -0.3 400,393 - GFF360 0.29 -0.1 400,428 + GFF360 0.34 +0.0 400,539 + GFF360 0.51 -0.7 400,566 + GFF360 0.55 -0.0 400,566 + GFF360 0.55 +0.8 400,566 + GFF360 0.55 +0.5 400,566 + GFF360 0.55 +0.1 400,566 + GFF360 0.55 -0.1 400,566 + GFF360 0.55 +0.9 400,567 - GFF360 0.55 +0.2 400,567 - GFF360 0.55 +1.0 400,567 - GFF360 0.55 +0.7 400,567 - GFF360 0.55 -0.3 400,567 - GFF360 0.55 +0.0 400,567 - GFF360 0.55 +0.7 400,567 - GFF360 0.55 +0.8 400,567 - GFF360 0.55 +0.6 400,595 + GFF360 0.60 -0.7 400,596 - GFF360 0.60 +0.4 400,596 - GFF360 0.60 +1.3 400,688 - GFF360 0.74 +0.2 400,689 + GFF360 0.74 -0.3 400,689 + GFF360 0.74 -0.7 400,690 - GFF360 0.74 +0.3 400,824 + +0.0 400,824 + -0.7 400,824 + +0.2 400,824 + -0.9 400,824 + -0.0 400,824 + -0.3 400,825 - -0.0 400,825 - -1.1 400,825 - -1.0 400,825 - +0.6 400,825 - +0.8 400,825 - -0.2 400,825 - +0.2 400,825 - -1.8 400,825 - +0.6 400,825 - +0.1 400,827 + -0.7 400,827 + +1.1 400,827 + +0.1 400,828 - +0.1 400,828 - +1.3 400,828 - +0.1 400,828 - -0.2 400,828 - -0.8 400,902 + +0.5 400,902 + +1.0 400,903 - -0.1 400,903 - +0.3 400,903 - -0.2 400,903 - -0.7 400,904 + +0.6 400,904 + -0.5 400,904 + +0.5 400,904 + -0.7 400,905 - +0.6 401,003 - -0.6
Or see this region's nucleotide sequence