Strain Fitness in Pseudomonas sp. DMC3 around GFF335

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF333 and GFF334 overlap by 14 nucleotidesGFF334 and GFF335 are separated by 198 nucleotidesGFF335 and GFF336 are separated by 171 nucleotides GFF333 - L-cystine transport system permease protein YecS, at 369,921 to 370,571 GFF333 GFF334 - Glutamine transport ATP-binding protein GlnQ, at 370,558 to 371,295 GFF334 GFF335 - Exopolyphosphatase, at 371,494 to 372,996 GFF335 GFF336 - Polyphosphate kinase, at 373,168 to 375,393 GFF336 Position (kb) 371 372 373Strain fitness (log2 ratio) -2 -1 0 1 2at 370.500 kb on + strand, within GFF333at 370.500 kb on + strand, within GFF333at 370.516 kb on - strandat 370.539 kb on + strandat 370.569 kb on + strandat 370.569 kb on + strandat 370.587 kb on + strandat 370.587 kb on + strandat 370.587 kb on + strandat 370.588 kb on - strandat 370.591 kb on + strandat 370.591 kb on + strandat 370.592 kb on - strandat 370.592 kb on - strandat 370.592 kb on - strandat 370.592 kb on - strandat 370.610 kb on + strandat 370.610 kb on + strandat 370.611 kb on - strandat 370.611 kb on - strandat 370.753 kb on + strand, within GFF334at 370.753 kb on + strand, within GFF334at 370.886 kb on + strand, within GFF334at 371.269 kb on - strandat 371.406 kb on + strandat 371.828 kb on + strand, within GFF335at 371.828 kb on + strand, within GFF335at 371.828 kb on + strand, within GFF335at 371.828 kb on + strand, within GFF335at 371.829 kb on - strand, within GFF335at 371.866 kb on + strand, within GFF335at 371.867 kb on - strand, within GFF335at 371.867 kb on - strand, within GFF335at 371.938 kb on - strand, within GFF335at 372.019 kb on + strand, within GFF335at 372.020 kb on - strand, within GFF335at 372.020 kb on - strand, within GFF335at 372.025 kb on - strand, within GFF335at 372.025 kb on - strand, within GFF335at 372.148 kb on - strand, within GFF335at 372.400 kb on + strand, within GFF335at 372.400 kb on + strand, within GFF335at 372.401 kb on - strand, within GFF335at 372.626 kb on - strand, within GFF335at 372.631 kb on + strand, within GFF335at 372.735 kb on + strand, within GFF335at 373.002 kb on - strandat 373.058 kb on + strandat 373.058 kb on + strandat 373.058 kb on + strandat 373.058 kb on + strandat 373.086 kb on - strandat 373.086 kb on - strandat 373.086 kb on - strandat 373.265 kb on + strandat 373.266 kb on - strandat 373.314 kb on - strandat 373.314 kb on - strandat 373.454 kb on + strand, within GFF336at 373.454 kb on + strand, within GFF336at 373.455 kb on - strand, within GFF336at 373.595 kb on + strand, within GFF336at 373.595 kb on + strand, within GFF336at 373.595 kb on + strand, within GFF336at 373.596 kb on - strand, within GFF336at 373.832 kb on + strand, within GFF336at 373.832 kb on + strand, within GFF336at 373.832 kb on + strand, within GFF336at 373.841 kb on + strand, within GFF336at 373.841 kb on + strand, within GFF336at 373.865 kb on + strand, within GFF336at 373.866 kb on - strand, within GFF336at 373.866 kb on - strand, within GFF336at 373.866 kb on - strand, within GFF336at 373.890 kb on - strand, within GFF336at 373.964 kb on + strand, within GFF336at 373.964 kb on + strand, within GFF336at 373.965 kb on - strand, within GFF336at 373.965 kb on - strand, within GFF336

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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370,500 + GFF333 0.89 -0.5
370,500 + GFF333 0.89 +1.2
370,516 - -0.5
370,539 + -0.9
370,569 + +0.1
370,569 + -0.5
370,587 + +0.6
370,587 + +0.5
370,587 + -0.0
370,588 - +0.8
370,591 + +0.0
370,591 + -0.7
370,592 - -0.6
370,592 - -1.1
370,592 - -1.0
370,592 - +2.4
370,610 + -0.1
370,610 + -0.4
370,611 - -0.3
370,611 - -0.3
370,753 + GFF334 0.26 +0.2
370,753 + GFF334 0.26 -0.3
370,886 + GFF334 0.44 -0.1
371,269 - +1.0
371,406 + -0.8
371,828 + GFF335 0.22 -1.2
371,828 + GFF335 0.22 -1.0
371,828 + GFF335 0.22 +0.8
371,828 + GFF335 0.22 +0.5
371,829 - GFF335 0.22 -1.5
371,866 + GFF335 0.25 -0.4
371,867 - GFF335 0.25 -0.1
371,867 - GFF335 0.25 -0.9
371,938 - GFF335 0.30 +0.4
372,019 + GFF335 0.35 -1.9
372,020 - GFF335 0.35 -2.1
372,020 - GFF335 0.35 -0.4
372,025 - GFF335 0.35 -1.3
372,025 - GFF335 0.35 -0.8
372,148 - GFF335 0.44 -1.1
372,400 + GFF335 0.60 +0.8
372,400 + GFF335 0.60 -1.0
372,401 - GFF335 0.60 -1.5
372,626 - GFF335 0.75 -1.5
372,631 + GFF335 0.76 -0.0
372,735 + GFF335 0.83 -0.2
373,002 - +1.4
373,058 + -0.3
373,058 + -0.7
373,058 + +0.0
373,058 + +0.4
373,086 - +1.4
373,086 - +1.4
373,086 - -1.0
373,265 + -0.7
373,266 - -1.0
373,314 - -0.2
373,314 - -1.9
373,454 + GFF336 0.13 -0.5
373,454 + GFF336 0.13 -0.4
373,455 - GFF336 0.13 -1.3
373,595 + GFF336 0.19 -0.5
373,595 + GFF336 0.19 -1.8
373,595 + GFF336 0.19 -1.8
373,596 - GFF336 0.19 -1.6
373,832 + GFF336 0.30 -0.2
373,832 + GFF336 0.30 -0.6
373,832 + GFF336 0.30 -1.2
373,841 + GFF336 0.30 +0.2
373,841 + GFF336 0.30 -0.9
373,865 + GFF336 0.31 -0.4
373,866 - GFF336 0.31 -1.0
373,866 - GFF336 0.31 -1.8
373,866 - GFF336 0.31 -2.5
373,890 - GFF336 0.32 -1.2
373,964 + GFF336 0.36 -0.9
373,964 + GFF336 0.36 -0.5
373,965 - GFF336 0.36 -0.2
373,965 - GFF336 0.36 -1.1

Or see this region's nucleotide sequence