Strain Fitness in Pseudomonas sp. DMC3 around GFF3306

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3304 and GFF3305 are separated by 77 nucleotidesGFF3305 and GFF3306 are separated by 62 nucleotidesGFF3306 and GFF3307 are separated by 24 nucleotides GFF3304 - hypothetical protein, at 295,353 to 302,459 GFF3304 GFF3305 - hypothetical protein, at 302,537 to 303,133 GFF3305 GFF3306 - Sensor histidine kinase RcsC, at 303,196 to 306,048 GFF3306 GFF3307 - Phosphoribosylamine--glycine ligase, at 306,073 to 307,368 GFF3307 Position (kb) 303 304 305 306 307Strain fitness (log2 ratio) -3 -2 -1 0 1at 302.332 kb on + strandat 302.333 kb on - strandat 302.363 kb on + strandat 302.363 kb on + strandat 302.363 kb on + strandat 302.364 kb on - strandat 302.364 kb on - strandat 302.364 kb on - strandat 302.364 kb on - strandat 302.364 kb on - strandat 302.499 kb on - strandat 302.551 kb on - strandat 302.566 kb on + strandat 302.670 kb on + strand, within GFF3305at 302.670 kb on + strand, within GFF3305at 302.670 kb on + strand, within GFF3305at 302.671 kb on - strand, within GFF3305at 302.707 kb on + strand, within GFF3305at 302.967 kb on + strand, within GFF3305at 302.967 kb on + strand, within GFF3305at 302.968 kb on - strand, within GFF3305at 302.968 kb on - strand, within GFF3305at 303.003 kb on - strand, within GFF3305at 303.059 kb on - strand, within GFF3305at 303.059 kb on - strand, within GFF3305at 303.088 kb on - strandat 303.088 kb on - strandat 303.171 kb on - strandat 303.171 kb on - strandat 303.198 kb on - strandat 303.373 kb on - strandat 303.682 kb on + strand, within GFF3306at 303.711 kb on + strand, within GFF3306at 303.711 kb on + strand, within GFF3306at 303.711 kb on + strand, within GFF3306at 303.711 kb on + strand, within GFF3306at 303.711 kb on + strand, within GFF3306at 303.712 kb on - strand, within GFF3306at 303.713 kb on + strand, within GFF3306at 303.908 kb on + strand, within GFF3306at 304.301 kb on - strand, within GFF3306at 304.670 kb on + strand, within GFF3306at 304.671 kb on - strand, within GFF3306at 304.671 kb on - strand, within GFF3306at 305.045 kb on + strand, within GFF3306at 305.045 kb on + strand, within GFF3306at 305.045 kb on + strand, within GFF3306at 305.046 kb on - strand, within GFF3306at 305.046 kb on - strand, within GFF3306at 305.046 kb on - strand, within GFF3306at 305.093 kb on + strand, within GFF3306at 305.093 kb on + strand, within GFF3306at 305.093 kb on + strand, within GFF3306at 305.093 kb on + strand, within GFF3306at 305.093 kb on + strand, within GFF3306at 305.093 kb on + strand, within GFF3306at 305.094 kb on - strand, within GFF3306at 305.094 kb on - strand, within GFF3306at 305.094 kb on - strand, within GFF3306at 305.394 kb on - strand, within GFF3306at 305.399 kb on + strand, within GFF3306at 305.542 kb on + strand, within GFF3306at 305.542 kb on + strand, within GFF3306at 305.542 kb on + strand, within GFF3306at 305.542 kb on + strand, within GFF3306at 305.542 kb on + strand, within GFF3306at 305.542 kb on + strand, within GFF3306at 305.543 kb on - strand, within GFF3306at 305.543 kb on - strand, within GFF3306at 305.543 kb on - strand, within GFF3306at 305.543 kb on - strand, within GFF3306at 305.543 kb on - strand, within GFF3306at 305.543 kb on - strand, within GFF3306at 305.543 kb on - strand, within GFF3306at 305.546 kb on + strand, within GFF3306at 305.547 kb on - strand, within GFF3306at 305.675 kb on + strand, within GFF3306at 305.675 kb on + strand, within GFF3306at 305.950 kb on + strandat 305.951 kb on - strandat 305.951 kb on - strandat 305.951 kb on - strandat 305.989 kb on + strandat 305.989 kb on + strandat 305.989 kb on + strandat 305.990 kb on - strandat 306.005 kb on + strandat 306.005 kb on + strandat 306.006 kb on - strandat 306.006 kb on - strandat 306.006 kb on - strandat 306.006 kb on - strandat 306.007 kb on + strandat 306.008 kb on - strandat 306.008 kb on - strandat 306.008 kb on - strandat 306.008 kb on - strandat 306.008 kb on - strandat 306.074 kb on + strandat 306.074 kb on + strandat 306.075 kb on - strandat 306.131 kb on + strandat 306.131 kb on + strandat 306.170 kb on + strandat 306.171 kb on - strandat 306.223 kb on + strand, within GFF3307at 306.224 kb on - strand, within GFF3307at 306.224 kb on - strand, within GFF3307at 306.561 kb on - strand, within GFF3307at 306.576 kb on - strand, within GFF3307at 306.576 kb on - strand, within GFF3307at 306.576 kb on - strand, within GFF3307at 306.576 kb on - strand, within GFF3307at 306.675 kb on - strand, within GFF3307at 306.781 kb on - strand, within GFF3307

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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302,332 + -0.9
302,333 - -0.7
302,363 + -0.3
302,363 + -0.3
302,363 + -0.1
302,364 - -0.5
302,364 - +0.8
302,364 - -0.3
302,364 - +0.7
302,364 - -0.5
302,499 - -0.9
302,551 - -0.4
302,566 + -0.8
302,670 + GFF3305 0.22 +0.4
302,670 + GFF3305 0.22 +0.0
302,670 + GFF3305 0.22 +0.2
302,671 - GFF3305 0.22 +0.7
302,707 + GFF3305 0.28 +0.2
302,967 + GFF3305 0.72 -0.4
302,967 + GFF3305 0.72 -1.0
302,968 - GFF3305 0.72 -0.3
302,968 - GFF3305 0.72 +0.7
303,003 - GFF3305 0.78 +1.5
303,059 - GFF3305 0.87 +0.6
303,059 - GFF3305 0.87 +0.0
303,088 - -0.6
303,088 - +0.3
303,171 - -0.0
303,171 - -0.8
303,198 - -0.1
303,373 - -1.6
303,682 + GFF3306 0.17 +1.3
303,711 + GFF3306 0.18 -0.2
303,711 + GFF3306 0.18 -0.2
303,711 + GFF3306 0.18 -0.8
303,711 + GFF3306 0.18 -0.6
303,711 + GFF3306 0.18 +0.7
303,712 - GFF3306 0.18 -0.1
303,713 + GFF3306 0.18 -0.6
303,908 + GFF3306 0.25 -0.6
304,301 - GFF3306 0.39 -1.2
304,670 + GFF3306 0.52 +0.7
304,671 - GFF3306 0.52 -0.2
304,671 - GFF3306 0.52 -0.5
305,045 + GFF3306 0.65 +1.3
305,045 + GFF3306 0.65 -1.3
305,045 + GFF3306 0.65 -2.8
305,046 - GFF3306 0.65 -0.0
305,046 - GFF3306 0.65 -1.4
305,046 - GFF3306 0.65 +0.5
305,093 + GFF3306 0.66 -2.6
305,093 + GFF3306 0.66 -1.2
305,093 + GFF3306 0.66 +0.5
305,093 + GFF3306 0.66 -1.3
305,093 + GFF3306 0.66 -1.8
305,093 + GFF3306 0.66 -0.6
305,094 - GFF3306 0.67 -1.1
305,094 - GFF3306 0.67 -0.1
305,094 - GFF3306 0.67 -1.6
305,394 - GFF3306 0.77 -1.1
305,399 + GFF3306 0.77 -1.6
305,542 + GFF3306 0.82 +0.2
305,542 + GFF3306 0.82 -0.5
305,542 + GFF3306 0.82 -0.6
305,542 + GFF3306 0.82 -0.5
305,542 + GFF3306 0.82 -0.8
305,542 + GFF3306 0.82 -1.0
305,543 - GFF3306 0.82 -1.3
305,543 - GFF3306 0.82 -1.1
305,543 - GFF3306 0.82 -1.9
305,543 - GFF3306 0.82 +0.0
305,543 - GFF3306 0.82 -1.4
305,543 - GFF3306 0.82 -1.1
305,543 - GFF3306 0.82 -0.3
305,546 + GFF3306 0.82 -1.5
305,547 - GFF3306 0.82 +0.1
305,675 + GFF3306 0.87 -0.1
305,675 + GFF3306 0.87 -0.6
305,950 + -0.6
305,951 - -1.1
305,951 - -1.5
305,951 - +0.2
305,989 + -1.7
305,989 + +0.0
305,989 + +1.4
305,990 - -1.7
306,005 + +1.7
306,005 + -0.1
306,006 - -0.5
306,006 - -0.8
306,006 - +0.6
306,006 - -0.7
306,007 + -1.8
306,008 - -0.6
306,008 - -1.0
306,008 - -0.4
306,008 - +0.0
306,008 - -0.6
306,074 + -0.5
306,074 + +0.9
306,075 - -0.3
306,131 + -0.9
306,131 + -1.6
306,170 + -1.3
306,171 - -1.6
306,223 + GFF3307 0.12 -1.1
306,224 - GFF3307 0.12 -1.1
306,224 - GFF3307 0.12 -1.9
306,561 - GFF3307 0.38 -1.5
306,576 - GFF3307 0.39 -1.3
306,576 - GFF3307 0.39 -0.9
306,576 - GFF3307 0.39 -0.9
306,576 - GFF3307 0.39 -1.1
306,675 - GFF3307 0.46 -1.9
306,781 - GFF3307 0.55 -1.3

Or see this region's nucleotide sequence