Strain Fitness in Pseudomonas sp. DMC3 around GFF320

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF317 and GFF318 are separated by 125 nucleotidesGFF318 and GFF319 overlap by 4 nucleotidesGFF319 and GFF320 are separated by 289 nucleotidesGFF320 and GFF321 are separated by 35 nucleotidesGFF321 and GFF322 are separated by 197 nucleotidesGFF322 and GFF323 are separated by 140 nucleotides GFF317 - hypothetical protein, at 355,800 to 356,357 GFF317 GFF318 - hypothetical protein, at 356,483 to 356,692 GFF318 GFF319 - Cell division protein ZapA, at 356,689 to 357,006 GFF319 GFF320 - 5-formyltetrahydrofolate cyclo-ligase, at 357,296 to 357,901 GFF320 GFF321 - hypothetical protein, at 357,937 to 358,092 GFF321 GFF322 - hypothetical protein, at 358,290 to 358,742 GFF322 GFF323 - hypothetical protein, at 358,883 to 359,290 GFF323 Position (kb) 357 358Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 356.382 kb on + strandat 356.382 kb on + strandat 356.382 kb on + strandat 356.382 kb on + strandat 356.383 kb on - strandat 356.383 kb on - strandat 356.389 kb on - strandat 356.404 kb on + strandat 356.404 kb on + strandat 356.405 kb on - strandat 356.405 kb on - strandat 356.405 kb on - strandat 356.405 kb on - strandat 356.405 kb on - strandat 356.409 kb on + strandat 356.409 kb on + strandat 356.435 kb on + strandat 356.435 kb on + strandat 356.454 kb on - strandat 356.551 kb on + strand, within GFF318at 356.551 kb on + strand, within GFF318at 356.551 kb on + strand, within GFF318at 356.552 kb on - strand, within GFF318at 356.552 kb on - strand, within GFF318at 356.552 kb on - strand, within GFF318at 356.552 kb on - strand, within GFF318at 356.571 kb on + strand, within GFF318at 356.571 kb on + strand, within GFF318at 356.571 kb on + strand, within GFF318at 356.571 kb on + strand, within GFF318at 356.571 kb on + strand, within GFF318at 356.572 kb on - strand, within GFF318at 356.572 kb on - strand, within GFF318at 356.572 kb on - strand, within GFF318at 356.572 kb on - strand, within GFF318at 356.574 kb on + strand, within GFF318at 356.574 kb on + strand, within GFF318at 356.574 kb on + strand, within GFF318at 356.574 kb on + strand, within GFF318at 356.574 kb on + strand, within GFF318at 356.575 kb on - strand, within GFF318at 356.575 kb on - strand, within GFF318at 356.575 kb on - strand, within GFF318at 356.641 kb on + strand, within GFF318at 356.642 kb on - strand, within GFF318at 356.642 kb on - strand, within GFF318at 356.642 kb on - strand, within GFF318at 356.704 kb on - strandat 356.704 kb on - strandat 356.704 kb on - strandat 356.734 kb on + strand, within GFF319at 356.734 kb on + strand, within GFF319at 356.734 kb on + strand, within GFF319at 356.735 kb on - strand, within GFF319at 356.788 kb on + strand, within GFF319at 357.026 kb on + strandat 357.026 kb on + strandat 357.027 kb on - strandat 357.027 kb on - strandat 357.027 kb on - strandat 357.028 kb on + strandat 357.028 kb on + strandat 357.029 kb on - strandat 357.029 kb on - strandat 357.029 kb on - strandat 357.029 kb on - strandat 357.088 kb on - strandat 357.088 kb on - strandat 357.127 kb on + strandat 357.141 kb on + strandat 357.141 kb on + strandat 357.141 kb on + strandat 357.148 kb on + strandat 357.148 kb on + strandat 357.148 kb on + strandat 357.149 kb on - strandat 357.237 kb on + strandat 357.238 kb on - strandat 357.238 kb on - strandat 357.263 kb on + strandat 357.263 kb on + strandat 357.263 kb on + strandat 357.445 kb on + strand, within GFF320at 357.445 kb on + strand, within GFF320at 357.445 kb on + strand, within GFF320at 357.445 kb on + strand, within GFF320at 357.445 kb on + strand, within GFF320at 357.445 kb on + strand, within GFF320at 357.446 kb on - strand, within GFF320at 357.446 kb on - strand, within GFF320at 357.446 kb on - strand, within GFF320at 357.446 kb on - strand, within GFF320at 357.446 kb on - strand, within GFF320at 357.455 kb on + strand, within GFF320at 357.455 kb on + strand, within GFF320at 357.455 kb on + strand, within GFF320at 357.455 kb on + strand, within GFF320at 357.455 kb on + strand, within GFF320at 357.456 kb on - strand, within GFF320at 357.456 kb on - strand, within GFF320at 357.527 kb on + strand, within GFF320at 357.528 kb on - strand, within GFF320at 357.537 kb on + strand, within GFF320at 357.737 kb on + strand, within GFF320at 357.737 kb on + strand, within GFF320at 357.737 kb on + strand, within GFF320at 357.737 kb on + strand, within GFF320at 357.738 kb on - strand, within GFF320at 357.755 kb on + strand, within GFF320at 357.756 kb on - strand, within GFF320at 357.756 kb on - strand, within GFF320at 357.756 kb on - strand, within GFF320at 357.859 kb on - strandat 357.859 kb on - strandat 357.888 kb on - strandat 357.888 kb on - strandat 357.888 kb on - strandat 357.900 kb on - strandat 358.033 kb on + strand, within GFF321at 358.242 kb on + strandat 358.297 kb on - strandat 358.438 kb on - strand, within GFF322at 358.533 kb on + strand, within GFF322at 358.533 kb on + strand, within GFF322at 358.534 kb on - strand, within GFF322at 358.534 kb on - strand, within GFF322at 358.626 kb on + strand, within GFF322at 358.626 kb on + strand, within GFF322at 358.626 kb on + strand, within GFF322at 358.627 kb on - strand, within GFF322at 358.701 kb on - strandat 358.701 kb on - strandat 358.744 kb on + strandat 358.810 kb on + strandat 358.810 kb on + strandat 358.884 kb on + strandat 358.884 kb on + strandat 358.885 kb on - strandat 358.885 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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356,382 + +0.1
356,382 + -0.2
356,382 + -1.8
356,382 + +0.7
356,383 - +0.0
356,383 - -0.1
356,389 - -1.7
356,404 + +0.1
356,404 + -0.8
356,405 - -0.5
356,405 - +0.1
356,405 - +0.1
356,405 - -0.0
356,405 - +0.1
356,409 + -0.5
356,409 + +0.1
356,435 + -0.8
356,435 + -0.3
356,454 - -0.2
356,551 + GFF318 0.32 +0.4
356,551 + GFF318 0.32 +1.5
356,551 + GFF318 0.32 -0.0
356,552 - GFF318 0.33 -0.1
356,552 - GFF318 0.33 +0.4
356,552 - GFF318 0.33 +0.4
356,552 - GFF318 0.33 -0.9
356,571 + GFF318 0.42 -0.1
356,571 + GFF318 0.42 -0.1
356,571 + GFF318 0.42 -2.4
356,571 + GFF318 0.42 +0.2
356,571 + GFF318 0.42 -0.3
356,572 - GFF318 0.42 +0.5
356,572 - GFF318 0.42 -2.7
356,572 - GFF318 0.42 -0.0
356,572 - GFF318 0.42 -0.9
356,574 + GFF318 0.43 +1.0
356,574 + GFF318 0.43 +0.6
356,574 + GFF318 0.43 -0.0
356,574 + GFF318 0.43 -0.4
356,574 + GFF318 0.43 -0.0
356,575 - GFF318 0.44 +0.1
356,575 - GFF318 0.44 +0.2
356,575 - GFF318 0.44 -0.6
356,641 + GFF318 0.75 +0.6
356,642 - GFF318 0.76 +1.0
356,642 - GFF318 0.76 +0.2
356,642 - GFF318 0.76 -1.2
356,704 - +0.9
356,704 - -0.2
356,704 - -1.6
356,734 + GFF319 0.14 -0.1
356,734 + GFF319 0.14 +0.0
356,734 + GFF319 0.14 +1.3
356,735 - GFF319 0.14 +1.4
356,788 + GFF319 0.31 +0.4
357,026 + -0.8
357,026 + +0.2
357,027 - -0.3
357,027 - +0.2
357,027 - -0.4
357,028 + +0.3
357,028 + -0.2
357,029 - +0.2
357,029 - -0.3
357,029 - -0.9
357,029 - -0.4
357,088 - -0.7
357,088 - -0.4
357,127 + +0.6
357,141 + -2.1
357,141 + -0.9
357,141 + -0.6
357,148 + -1.8
357,148 + -1.5
357,148 + +0.8
357,149 - -0.5
357,237 + -0.3
357,238 - -0.7
357,238 - +1.6
357,263 + +0.4
357,263 + -0.3
357,263 + -0.7
357,445 + GFF320 0.25 +0.5
357,445 + GFF320 0.25 -1.3
357,445 + GFF320 0.25 -0.0
357,445 + GFF320 0.25 -0.8
357,445 + GFF320 0.25 -2.8
357,445 + GFF320 0.25 +0.1
357,446 - GFF320 0.25 -0.9
357,446 - GFF320 0.25 -0.3
357,446 - GFF320 0.25 -1.1
357,446 - GFF320 0.25 -1.9
357,446 - GFF320 0.25 -0.2
357,455 + GFF320 0.26 -1.4
357,455 + GFF320 0.26 -0.6
357,455 + GFF320 0.26 +0.4
357,455 + GFF320 0.26 -1.6
357,455 + GFF320 0.26 -0.3
357,456 - GFF320 0.26 -0.2
357,456 - GFF320 0.26 +0.1
357,527 + GFF320 0.38 -1.5
357,528 - GFF320 0.38 -1.4
357,537 + GFF320 0.40 -0.2
357,737 + GFF320 0.73 -0.6
357,737 + GFF320 0.73 -0.6
357,737 + GFF320 0.73 -0.4
357,737 + GFF320 0.73 -1.7
357,738 - GFF320 0.73 -1.3
357,755 + GFF320 0.76 -0.8
357,756 - GFF320 0.76 +0.4
357,756 - GFF320 0.76 +0.3
357,756 - GFF320 0.76 -0.8
357,859 - -0.8
357,859 - +0.2
357,888 - +0.3
357,888 - -1.5
357,888 - -1.6
357,900 - -0.1
358,033 + GFF321 0.62 -2.0
358,242 + -0.6
358,297 - -0.7
358,438 - GFF322 0.33 +0.5
358,533 + GFF322 0.54 -0.3
358,533 + GFF322 0.54 -0.4
358,534 - GFF322 0.54 +0.2
358,534 - GFF322 0.54 -0.6
358,626 + GFF322 0.74 -0.9
358,626 + GFF322 0.74 +1.8
358,626 + GFF322 0.74 +1.4
358,627 - GFF322 0.74 -1.0
358,701 - +0.2
358,701 - -1.2
358,744 + +1.1
358,810 + -0.4
358,810 + -1.1
358,884 + -0.8
358,884 + +0.0
358,885 - -0.4
358,885 - -0.2

Or see this region's nucleotide sequence